ID FJ438902; SV 1; linear; genomic RNA; STD; VRL; 7632 BP. XX AC FJ438902; XX DT 13-JAN-2009 (Rel. 99, Created) DT 01-NOV-2021 (Rel. 144, Last updated, Version 3) XX DE Cosavirus A1 strain HCoSV-A1 polyprotein gene, complete cds. XX KW . XX OS cosavirus A1 OC Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; OC Picornavirales; Picornaviridae; Cosavirus. XX RN [1] RP 1-7632 RX DOI; 10.1073/pnas.0807979105. RX PUBMED; 19033469. RA Kapoor A., Victoria J., Simmonds P., Slikas E., Chieochansin T., Naeem A., RA Shaukat S., Sharif S., Alam M.M., Angez M., Wang C., Shafer R.W., Zaidi S., RA Delwart E.; RT "A highly prevalent and genetically diversified Picornaviridae genus in RT South Asian children"; RL Proc. Natl. Acad. Sci. U.S.A. 105(51):20482-20487(2008). XX RN [2] RP 1-7632 RA Kapoor A., Victoria J., Simmonds P., Slikas E., Chieochansin T., Naeem A., RA Shaukat S., Sharif S., Alam M.M., Angez M., Wang C., Shafer R.W., Zaidi S., RA Delwart E.; RT ; RL Submitted (05-NOV-2008) to the INSDC. RL Molecular Virology, Blood Systems Research Institute, 270, Masonic Avenue, RL San Francisco, CA 94118, USA XX DR MD5; a1bcca846cb7355e727b3ab1d7b7a2de. DR EuropePMC; PMC2706813; 19552824. DR EuropePMC; PMC4635496; 26018961. DR EuropePMC; PMC5059993; 27729038. DR EuropePMC; PMC6098101; 30120342. DR RFAM; RF00210; IRES_Aptho. XX FH Key Location/Qualifiers FH FT source 1..7632 FT /organism="cosavirus A1" FT /host="Homo sapiens" FT /strain="HCoSV-A1" FT /isolate="0553" FT /mol_type="genomic RNA" FT /isolation_source="feces" FT /db_xref="taxon:2757769" FT 5'UTR <1..1164 FT CDS 1165..7539 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:B8XTP8" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001676" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="InterPro:IPR037080" FT /db_xref="UniProtKB/Swiss-Prot:B8XTP8" FT /protein_id="ACL15185.1" FT /translation="MGANNSKESVSSNGNEGTIVNNFYSNQYYASIDASAQGVGTSTTP FT ENGNVSGFLGLAGSAFNALSLLASPRTETGMMMEDRVLSRTAGNTSVNSQAAEGVLQAY FT GTETDSNSPTSCGDDPSKGTHATDRAFVIQLLPWKQTTNSYFAQWVRLTQKLSNNLHGN FT VMAKNIKSHAFAKMGFEVMLQANTSPFHNGILGLFLVPEFVRKGEITDEWIDLTPTSSL FT VSNTELYNPQTYANFPFDAKHSFDYSDITPEQFMIFPHQLINPKDTNVATVRVPYINIA FT PTNDTTVHTVWTAVVMVLVPLNFSSGASPTVSLTLTITPINSVFNGLHHTAQGPIPVRP FT FHNFQQFSTTVPLRTEPCYGMTVTPPVDYMPLPITDLVELAKVPSFVTVANSDTTSERS FT FPYFSVSNTEQGRNLFKSSVVLSDLHYQHTLVANLARYFCNYRGSLQFDFIAATTAMTR FT GKLLISYTPPGAGEPQSIDQAMMGTYAIWDLGLQSTFNFVVPFISASDFRFNTSSVSNA FT LNSDGWITVWLMNPLTYPPSTPPTQQILMLMSAGSDFSYRLPISPGFAEGETSEHPMDN FT AECGKIDDKDAGMFSGHSVGLPTPHTSTSFFYDRYRFVGIVKSVVNNTPKPVNIYDDTG FT KVKNLQQVFPTSDTLLPHSLMSLSPCASVCGQPISSFLFAQRANPKKTLKLRSGDEFLY FT RCCPFSYIKCDLEFTVVPPANSTRDYIVHWYPPGATLDAGEVAVGNTSGSNGFDDNGMN FT AGSSLFSYNPTFHARAPSKVSAVIPFCLPVSLLPLYFDGFPDYSTTKGMYGCSPSFSFG FT TIYIESGLQETYSVYIRYKDFKGYAPRPLIRTPHIRLSERARYIMADSVLPRPLTRAER FT DVARDLLLIAGDIESNPGPAFNPEYTAHGPVTELIQLARKPETVDNVNRLLTTLNTLMA FT KWNNLKDTVTDAVFLRDMVCLLVKLTSLMYLVHGQGPGAYFAAASILLADGITFFDWYE FT KIKIFMARKLRVSPPFFPAAQGPDLRDFVTFFNAARGAQWMIDSLKSLITCIKQWLELE FT EENEAVQLEKMLIDSPRHCKAINDYNRGDSFQRPTNSFEFMDRLVECATKLGKVQIATY FT FRNFTTADSDTSRPEPVVVVLRGKPGVGKSAAATVMAAAVSKLLVGSQSVYTLSPDTEH FT MDGYHGQFVTLMDDLGQNPDGEDFRCFCQMVSCAQYRPAMADLKDKGILFTSRLLIATT FT NLPDFNPVTISDPRALDRRITFDILVTPGSAATKNGKLDLAAALKPDGPGEHPYTSDCP FT ILHTTGLLLKNLRNNQTMNLKDLVDMIVKRIKHKKEVGNMLDSLVAQGPTMIVGYTKDD FT DGIAIVDCLEEWNKIKDKKKKQLALEMVAQELKDKHEEHKGTIKLLKMFVTGLGVVAAV FT AGAYATMKYFTKDKPKEEEEEPEEKKEKKTEESKEAAGPYNGPTKKEIKTLKLKAQSPL FT MDMEKKIAQNVMPFQIFYNGKRYTQSCLAIGKRVILVNKHAFESVEHKFVVDQKEYTLD FT QVTAISLDCGSGVTDVCAVCLPPGPDFKSIKKHFLPFNTTMFPGTRLTILSNDHYPMSR FT EGSFLRFEDEVPTNVGNMPFVMLYKSTSYFGMCGSVVCSRFVDGGGIIGMHCAGGGGVS FT VGTRLTARMIESVFDYFYPPVAQGIIENTETGPRVHVPRTSKLKRTNATYPATEKYGPA FT ALSRYDPRLNEGVNLDEVIFSKHTQNTLVEKGSTFRSALDMAAEIYGEKFRGNDFSPLS FT VEDAILGIPGLDRLDPNTASGLPYTKTRRQMIDFNTGQILDDTLKCRLGQWLAGRPPQE FT VHYQTFLKDEIRPIEKVKAGKTRIIDVPPLDHVIAFRMLFGRFIAHYHLNFGFKTGSAI FT GCDPDVAWASFGFELSGFPYLYDFDYSNFDASHSTSIFEILEQKFFSPELGFDPRCSLL FT LKSLAVSTHCYENKRLQIAGGLPSGTAGTSVLNTVINNIIFHGALYHTYTNFERDDISM FT LAYGDDIVVASKFELDLVMVKAFMNRIGYKITPADKSDEFRPKCMDDICFLKRRFVKVA FT GVWAPVMETENLEAMLSWYKPGTLNEKLQSVSRLAHFSGRDVYDHLFKPFIRDGFDVTP FT WKQLHLEWLNKLSA" FT mat_peptide 1165..1368 FT /product="VP4" FT mat_peptide 1369..2163 FT /product="VP2" FT mat_peptide 2164..2862 FT /product="VP3" FT mat_peptide 2863..3741 FT /product="VP1" FT mat_peptide 3742..3831 FT /product="2A" FT mat_peptide 3832..4194 FT /product="2B" FT mat_peptide 4195..5157 FT /product="3C" FT mat_peptide 5158..5481 FT /product="3A" FT mat_peptide 5482..5538 FT /product="3B" FT /note="VPg" FT mat_peptide 5539..6147 FT /product="3C" FT /note="Pro" FT mat_peptide 6148..7536 FT /product="3D" FT /note="RdRp" FT 3'UTR 7540..7632 XX SQ Sequence 7632 BP; 2108 A; 1722 C; 1617 G; 2185 T; 0 other; ttctgagacc ggcacggtca acccgactca tttacgagtt actcatttat tttgaaacat 60 cataaagaac gtgaaccgct ctttgtttct ttaaggaatt tagagtagaa aacatttgag 120 atgaggcccg gttgaactcc gggcgctttc catccgctgt gatgggctca ctcctgtaca 180 ccgtgagtcc gcgcagtgct gacttaacac ttaagtaatg tataggccga ggattacacc 240 gctcggctcc cacctttcac caccgtggga ttaacaggtt caatgcacaa attcctgtcc 300 ttggctatgt caaagcaata cagtgtgtac atggcgtgca cgctcaaagc ggagacttag 360 gcctcacaga ttgtgttttg tgttattgga tgctggatgg tcacgttgga gactgcatgt 420 ggcagtcttg aaacgtgtgg tttgacgtct atccattatg gcagtgggtg gagtactgca 480 aagatgtcac cgtgctttac acggtttttg aaccccacac cggctgtttg gcgcttgcag 540 gacagcaggt ttattttctt atgttctcca tttctagcca acagggttct atcctgttgg 600 gcggagtgat actcccgttc cttcttggac agattgcctc cacgttcttt gtggatctca 660 aggtgatcaa gtcactggtg aatagagcga aggttgagga gacctgagga atttccatgt 720 ggctttgcca ggagttgtag cgatgctgtg tgtgtgtgcg gatttcccct catggcaaca 780 tgagcctcac aggccaaaag ccctgtccga aaggacccac acagtggagc aaccccagct 840 ccctcctaca aagctttgtg agaatgaact caagtttatt ctactttatt ctctatttac 900 atcaggcccc aaagatgtcc tgaaggtacc ttgtgtatct gggcacgagc accatcagct 960 acccggactt gtatttcggt acagacacat gtggtgaccc agcccctctg cttcggcagg 1020 ggggctttcg ctcgctcagc acgagatctg atcaggagcc cctcccagtg tgctttacac 1080 ctggcgaggg gttaaaaatt gcccaaggcc tggcaaaaca acctagggga ctaggttttc 1140 cttttattaa taatatctgt cattatgggt gcaaataata gcaaagaatc tgtgtccagc 1200 aatggcaacg agggaacaat tgttaataac ttttattcaa accagtatta tgcttctatt 1260 gatgcttctg cccaaggtgt tgggacctct actactcctg aaaacggcaa cgtatctggc 1320 tttcttggac ttgcaggtag tgcttttaat gctctctctc ttctcgcctc accacgaacc 1380 gagacaggaa tgatgatgga agatcgtgtc ctttcccgta ctgccggtaa tacatctgta 1440 aactctcaag ctgctgaagg ggttttgcag gcatatggga ctgagacaga cagcaattcg 1500 cccacttcgt gtggcgacga tcctagcaag ggtacacacg caacagacag agcctttgta 1560 atacaattgc ttccatggaa acagacaaca aattcatact ttgctcaatg ggtaagactc 1620 acacagaaac tgtcaaacaa tttgcatgga aatgttatgg ccaaaaacat taaatcacat 1680 gcttttgcca aaatgggctt tgaagtaatg ttacaggcaa acacctcgcc tttccataat 1740 ggcatactgg gtcttttctt ggtaccggag tttgttagaa agggtgaaat tacagatgag 1800 tggattgacc tcacacctac ctcttcttta gtttcaaaca ctgagttgta caacccccag 1860 acttatgcaa attttccatt tgatgctaaa catagttttg attattctga tattacacca 1920 gaacaattta tgattttccc tcaccaactt ataaatccta aagacacaaa tgttgccaca 1980 gtacgtgtgc cgtacattaa tattgctcca acaaatgata ctacagtaca tacagtatgg 2040 acagctgttg ttatggttct tgtacctctt aacttttctt ctggtgcttc accaactgta 2100 tctttaacat taactataac tccaataaac tcagttttta atggattaca tcacaccgca 2160 caggggccta tccctgtgcg acctttccat aatttccagc agtttagcac tactgtccct 2220 ctgcgcactg aaccatgtta cggcatgaca gtgactcctc cagttgatta catgccctta 2280 cccattacag atttagttga gcttgctaaa gtgcccagtt ttgttactgt ggcaaacagt 2340 gacacgacta gcgagcgtag tttcccttat ttctctgtta gtaacacaga acaaggcaga 2400 aatcttttca aatccagtgt agttctcagc gacttacact accagcacac tcttgtagca 2460 aatttggccc gttacttttg caactacaga ggtagtctac agtttgattt tatagctgca 2520 acaactgcaa tgacaagagg caaattgctc attagctaca ccccaccagg ggctggtgag 2580 ccacaatcaa ttgatcaggc aatgatggga acttatgcta tctgggattt gggattacaa 2640 tcaaccttca attttgtagt cccttttata tctgcttctg acttcagatt taacacctct 2700 tctgtatcta atgctttgaa ctctgatggt tggatcacag tgtggcttat gaaccctcta 2760 acatatcctc ccagtacacc tcctacccaa cagatattga tgttgatgtc agctggcagt 2820 gacttttctt accggttgcc catttcgccc ggtttcgccg agggggaaac gagcgaacat 2880 ccaatggaca acgctgagtg cgggaaaatt gatgacaaag acgcaggaat gttttccgga 2940 cactctgttg ggctgcctac tccccacacc tcgacttctt tcttctatga caggtacaga 3000 ttcgtaggaa ttgtaaagag tgtagtgaat aatactccca aaccagtcaa catttatgat 3060 gatacaggaa aagttaagaa cctacaacag gtttttccaa cttcagacac actactgccc 3120 cactctttga tgtccctttc tccctgtgcg tcagtgtgtg gccagcctat ctcttccttc 3180 ctgtttgctc aacgagcgaa tcccaagaaa actctaaagc tgcgctcagg tgatgaattc 3240 ttgtatagat gttgcccttt ttcttacatt aaatgtgacc ttgagtttac tgtggtcccc 3300 cctgcgaatt ctactagaga ttatattgtg cactggtacc cgccaggggc caccctggat 3360 gctggagaag tagccgtggg taatacatca ggtagcaatg gctttgatga taatgggatg 3420 aacgctggtt ctagtctgtt ttcttacaat cctactttcc acgcaagagc tccgtcaaaa 3480 gtctcagctg ttataccttt ttgcttaccc gtttctctat tacctctata ttttgatggc 3540 tttcccgatt acagtactac aaaaggaatg tatggatgct ccccttcttt tagttttgga 3600 accatataca ttgaatctgg actccaagaa acttattcag tttacattag atacaaggat 3660 tttaagggtt atgctcccag accgctcatt cggacaccac acattaggct atcagaaaga 3720 gctagatata ttatggcaga ctcggtgctt ccacgccctc tcacacgcgc tgaacgtgat 3780 gtggcgcgtg atttgctgct cattgctggg gatattgaat caaatccagg acctgcattt 3840 aatccagaat atacagctca tggcccagtt actgaattga ttcaattggc aaggaaacca 3900 gaaactgtag ataatgtaaa taggcttctc acaaccctga atactcttat ggctaaatgg 3960 aacaatctca aggatactgt tacagatgct gtgtttctta gagacatggt atgtcttctt 4020 gtgaagctta cttctcttat gtacttggtt catggacagg gaccaggtgc ttactttgct 4080 gctgcctcca ttcttcttgc tgatggcata actttctttg attggtacga gaaaatcaag 4140 attttcatgg ctagaaaact cagagtttcc cctcccttct tccccgctgc ccaggggccg 4200 gaccttagag actttgtgac ctttttcaac gcagcgcgcg gagcgcaatg gatgattgat 4260 tctctcaaat cccttataac ttgtatcaaa caatggcttg aacttgaaga ggaaaatgaa 4320 gcagtacaac ttgaaaagat gttaatagac tctcccagac attgcaaggc aataaatgac 4380 tacaacagag gtgactcctt tcagagaccg accaactctt ttgaattcat ggacagactt 4440 gtggaatgtg ctaccaagct tgggaaagtc caaattgcaa cttatttcag aaattttact 4500 acagctgatt ctgatacaag cagaccagag ccagttgttg ttgttttgcg cgggaaacca 4560 ggcgtaggca aatctgctgc agctactgtt atggcagctg cagtatctaa attgttggta 4620 ggaagtcaat cagtgtacac cctttcccca gatacggaac atatggatgg atatcacgga 4680 cagtttgtga ctttgatgga tgaccttgga caaaacccag acggagaaga cttcagatgt 4740 ttctgtcaaa tggtttcttg tgctcagtac agacctgcta tggctgacct taaagacaaa 4800 ggaatcctgt ttacatccag actgttgatt gctactacta atctcccaga ttttaaccct 4860 gttactatct ctgatccgcg agctttagat cgtcggatca cttttgatat tcttgtcact 4920 ccaggttctg ccgccaccaa gaatgggaaa cttgacttgg ccgctgctct caaaccagat 4980 ggaccgggag aacaccctta cacttctgat tgccctattc tccacaccac tggactcctc 5040 ctgaagaacc tcagaaacaa ccagaccatg aacttgaaag acctagtgga catgattgtt 5100 aagagaatta aacacaagaa agaagttgga aatatgcttg actctcttgt tgctcaggga 5160 cctactatga ttgttggcta taccaaagac gatgatggta tcgctattgt ggactgcttg 5220 gaagaatgga acaagataaa ggacaagaag aagaaacagc ttgctttgga aatggttgct 5280 caagaactta aggacaaaca tgaagaacat aaaggcacaa tcaaattact caaaatgttt 5340 gttactggcc ttggagtggt tgccgctgtt gcaggcgcgt atgccacaat gaaatacttt 5400 acaaaggaca aacccaagga agaagaagaa gagccagaag aaaagaaaga gaagaaaaca 5460 gaagaatcca aagaggctgc aggaccatac aacggaccta caaagaaaga aattaaaaca 5520 ttgaagttaa aggcccagag tccacttatg gatatggaaa agaaaattgc ccagaatgtc 5580 atgcccttcc agattttcta taatggaaaa agatacaccc agtcttgtct ggcaattgga 5640 aaaagagtta ttcttgtgaa caaacatgct tttgaatcag ttgaacacaa atttgttgtt 5700 gaccaaaagg aatacacatt ggaccaggtt acagctattt cccttgactg cggatcaggt 5760 gtcacggatg tgtgtgctgt atgtttgccc ccaggcccag acttcaaatc aataaagaaa 5820 catttcctac ccttcaacac taccatgttt ccaggaacca gactgaccat cctctcgaat 5880 gaccactacc ctatgtccag agaaggctct ttcctcagat ttgaggatga ggtaccgact 5940 aatgtaggta acatgccctt tgtaatgctt tacaaatcaa cctcttattt tggaatgtgt 6000 ggctcagttg tatgtagcag atttgttgat ggtggaggaa taattggaat gcactgcgca 6060 ggtggaggcg gagtcagtgt tggaactcgt ttgactgcta gaatgattga atcagttttt 6120 gattacttct accccccagt agcccaggga ataattgaaa acacagagac aggaccccgt 6180 gtacatgtgc ccagaacttc caaactcaaa agaacaaacg ccacttatcc ggcaacggaa 6240 aagtatggcc cagctgctct ttcgcggtat gatccgcgat taaatgaggg agtcaacttg 6300 gatgaggtga tcttctcaaa acatactcaa aacactcttg ttgagaaagg atccactttc 6360 agaagcgccc ttgacatggc agcagaaatt tatggtgaaa agtttagagg aaatgatttc 6420 tctccccttt cagttgaaga tgcaattctt ggaattcccg gacttgacag acttgacccg 6480 aatactgctt ctggattgcc ctacactaaa accagacgac agatgattga cttcaacaca 6540 ggacagattt tggacgacac tcttaagtgt cgacttggac aatggcttgc aggacgaccc 6600 ccccaggaag tacattacca gacatttctt aaggatgaaa tcaggcccat tgaaaaggtc 6660 aaagcaggaa agactagaat aattgatgtt cctcctcttg atcatgtcat cgcttttaga 6720 atgctctttg gcagattcat tgcccactac cacttaaact ttggcttcaa aacaggctct 6780 gctattggtt gtgacccaga tgtcgcttgg gcttcttttg gctttgaact cagtggcttt 6840 ccttatctgt atgattttga ttactcaaac tttgatgctt ctcacagtac ttcaatattt 6900 gaaatcttag aacagaaatt cttttcccca gaattaggtt ttgatcctag atgctcactt 6960 ctcttgaaat cccttgcagt ttcaacccac tgttatgaga acaagagact ccagattgct 7020 ggaggacttc cctctggcac ggcaggtacc tcagtactga acaccgtgat aaacaacatt 7080 atctttcacg gtgcactata ccacacttac actaattttg agcgggatga catcagtatg 7140 ttagcctatg gcgacgacat tgttgttgcc tccaaatttg aacttgactt ggttatggtt 7200 aaggctttca tgaaccggat tggctataag attacccctg cagacaaaag tgatgaattc 7260 agaccaaagt gtatggatga catttgcttc ttaaagaggc gttttgttaa agttgctgga 7320 gtttgggctc cagtgatgga aactgaaaac ctcgaggcaa tgttgtcttg gtacaaacca 7380 ggaactctta atgaaaagct ccagagtgtc tcaagacttg cccacttctc aggacgtgac 7440 gtgtatgacc accttttcaa gcccttcatt cgtgatgggt ttgatgtcac accttggaaa 7500 cagttacact tggaatggct taataagtta tcagcttaaa gaattttgaa ttggcatttc 7560 agatttattt tgaatttggc ttttaattcg gctttaattt ggttatttat tgggtatatt 7620 caaatctaat ga 7632 //