ID FJ436028; SV 1; linear; genomic RNA; STD; VRL; 6506 BP. XX AC FJ436028; XX DT 31-MAR-2009 (Rel. 100, Created) DT 31-MAR-2009 (Rel. 100, Last updated, Version 1) XX DE Grapevine Syrah Virus-1, complete genome. XX KW . XX OS Grapevine Syrah virus 1 OC Viruses; Riboviria; Tymovirales; Tymoviridae; Marafivirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-6506 RX DOI; 10.1016/j.virol.2009.02.028. RX PUBMED; 19304303. RA Al Rwahnih M., Daubert S., Golino D., Rowhani A.; RT "Deep sequencing analysis of RNAs from a grapevine showing Syrah decline RT symptoms reveals a multiple virus infection that includes a novel virus"; RL Virology 387(2):395-401(2009). XX RN [2] RP 1-6506 RA Al Rwahnih M., Daubert S., Golino D., Rowhani A.; RT ; RL Submitted (03-NOV-2008) to the INSDC. RL Plant Pathology Department, University of California-Davis, 1 Shields Ave, RL Davis, CA 95616, USA XX DR MD5; c495ccd1f326853c9efd6b737b3ced05. XX FH Key Location/Qualifiers FH FT source 1..6506 FT /organism="Grapevine Syrah virus 1" FT /host="Vitis vinifera cv. Syrah (grapevine)" FT /mol_type="genomic RNA" FT /country="USA" FT /db_xref="taxon:630199" FT CDS 142..6387 FT /codon_start=1 FT /product="putative 230 kDa polyprotein" FT /note="contains sequence motifs similar to FT methyltransferase, papain-like protease, helicase, FT polymerase and capsid proteins" FT /db_xref="GOA:C1J9J7" FT /db_xref="InterPro:IPR000574" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR008043" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:C1J9J7" FT /protein_id="ACO06249.1" FT /translation="MAAPATAYASPSAAFFALFQEQDLRCFRPLTLAHSLRYDAPVRPR FT QLPRLRSITVPITSLDEGFTPILIARPSLPLLGGGLKELVEMLAPTTHRDTVASPILEA FT VAGPLRTSIQRYPYEVPAHAVPVLQRFGIEASGFGFKAHPHPVHKTIEIHLLFEHWLNL FT CRSPSAVLFMKQSKFEKLQHENANFEALANYNLTARDTTRYEQVAVAPPTQAVWFMHDA FT LQYFSLSQVAAFFADCPHLEKLFASLVVPPESDFTNLSLFPEIYRYSFAGSRLNYQLEG FT NPGHSYSQPREALEWLKTTTIRCGNLYLTVTKLESWGPVHSLLIQRGKPSVHLEHDEVS FT FVGPDAVALPEAAALRQDLRHRLVPRTVYDALFVYVRAVRTLRTTDPVGFVRTQSNKAE FT YSWVTSAAWDNLQHFVTETAAHRVPNRHFFFNSTFAKCRYWCSQHKLGLLTVTTPPACG FT LTLFTGAKLASAMSSRLTALAVFHHWVVPPPTLFFTPKAPLLAIQLTRLPQPLFSSVPF FT LHKPLGKLSLRLLNRFPFLRRFFPDAPIPTWARLLTVAIALSPAVWLAIRHFIGPDAPQ FT ALNDHYVRFFHPDRWQLTFERQPRFVALDRTFPWPLPQAPEPTEPRDSDVPLETVPSPL FT PVVAPLPAPATSVPPVDTSATTVSAVEPSLSTESLKTVEAPSGTTILQPRELKDTIFPL FT PAAALAVTPPEPAPAPAEPVSASTVLGTAPLSRDLHTGHVSTPATEPGLVEPEHSPLAA FT DSSATGEVSEFFNLHPADWIAPTATFLARRRGETISGAKYPAMDCLLAAVSAGANIPKD FT ALWKTICSYFPDSMLREEDIAKHGLSTHHFAALAREHRLQATFHSAGNQFVLGVEHPSV FT SFHIDHTPESATAPGHFSLRADERQHSPRLLGGRAADLVHAALKFKVGSAVLPFQQAHD FT YTTNVARAKNLISNMKNGFDGVLANIDPAHTNESRDRLLSLDGAMDIAAPRDVKLIHIA FT GFPGCGKSYPIAQLLKSRAFKHFKIAVPTVELRNEWKGVLKVKPQDNWRISTWESSLLK FT SARILVIDEIYKMPRGYLDLAIHADPTIDLVIALGDPLQGVYHSTHSDSSNHRLSSEVK FT HLQPYMDYYCLWSHRVPQDIGTFFGIKSTSTVPGFKSYQANIPSNLRQLANSQSAAKVL FT NQCGFSSVTIASSQGSTYSAPACIHLDRHSMSLSHAHSLVALTRSKSGVIFTGDKRVLE FT APGGNLLFSSYFQEKKVDLRALFPTEFPCCPILLEPLKRRPTDLTGGAPFPFRDEARVF FT NPERRDDVFVEAAVVCGDGSSNAPQVSTHFLPETRRPLHFDLPSAKPEFAAHEAPAPLT FT DTFIEPVYPGETFENIAAHFLPAHDPEVKEILFKDQRSNQFPFIDQPFHVGAQPASLCA FT AVHHSKKDPTLLAASIEKRLRFRASDAPYQITAKDEILGSMLFEAHCRAMRRDPNVRVP FT FDEALFAECIALNEFAQLTSKTQAVIMANHERSDPDWRYTAVRIFAKNQHKVNSGSLFG FT PWKACQTLALMHDAVILLFGPVKKYQLIHDERDRPEHIFIYAGRTPQEMSEWCQKFLTP FT RSASSPVPVMVSGDDSLIGCHPHFVANDYTAFDQSQHGEAAVLERLKMERVNIPEWLIA FT LHIMIKTHITTQFGPLTCMRLTGEPGTYFDNSDYNLAVIFLEYSMSGQWLSENPLWPAI FT KPLLALRFKKEKTRYGNFCGYYVGAAGAVRMPRALFAKIFIAVEDASIADKMASYATEF FT AIGHSLGDALWSLLPVEEVVYQSAVFDFLCRNAPRELKLLFKLGPVERSVVEAVQEFAT FT WASYAFYRFLNSAQRKVLLTRSPQLHFPGDAPEVSQLQGELLQSFSMMQPTLPLTGGLL FT LPPAVDAPMSDDSLAGRARSQRDPDHRVDPQPSLPLAPSVQETPGGPAITVPFQWVALV FT VKSESTIFTVDPPRAKSLTQLIGPYRHARLLSLEAILMPTLNAFQNPVTVHMVWTVNTV FT QPASGEELFYPGGQALTVGGPVSMSALATVPADVSRLNPVIKGAVAFLDTPRLTGTTMK FT CAKSETSPMAYVVIRGTLALSGPVGTRLSE" FT CDS 752..1555 FT /codon_start=1 FT /product="putative movement protein" FT /note="p26" FT /db_xref="UniProtKB/TrEMBL:C1J9J8" FT /protein_id="ACO06250.1" FT /translation="MSRSPSPPPPKPSGLCTTRCSTSHSPKWLLSSRTALTLRSFSLPS FT SSLRSQTSPTSPFSRKFTGTASLALASTISWRATPATRTASLVKPSNGSKPPPFAAATS FT TSPSPSSSLGAPCTPCSSSAASHPCIWSMTKFPSSALTLLLSQKPPLSAKTSATASSLA FT QCTTPSSFTFVRCALSAPPTLSVSSALKATKRSIAGSPPLPGTTSSTSSLKRQPIGFQI FT GISSSTPLSLSAATGALSTSSGCSRSPLPLPAASPSSPGLSWPPP" XX SQ Sequence 6506 BP; 1175 A; 2442 C; 1421 G; 1468 T; 0 other; tcatgtaaag tctgtctcaa ctgctctcgc atcttgagtc actccttacc ggtcaactgt 60 gctttgccca gttgccaccc cacttcgtgg tctttctttc ttttgttttc actagggtcc 120 ctcggacaac cttctacggt catggcagcc cccgctaccg cctatgcttc ccctagcgcc 180 gctttcttcg ctctcttcca agagcaagat ctgcgttgct tccgccccct cactttagct 240 catagcctcc gctatgatgc ccccgtgagg ccccggcagc tcccccgcct tcgctccatc 300 accgttccta tcacctccct cgatgagggt ttcaccccca tcctcatcgc ccgtccctct 360 cttcccctcc ttggcggtgg tctcaaggaa ttggttgaga tgctcgcccc cactacccac 420 cgcgacaccg tagcttcacc catcctggaa gccgtcgccg gtccccttcg cacctccatc 480 cagcgctacc cctatgaggt gcctgctcat gccgttcccg tcctccaacg tttcggcatt 540 gaggcctctg gttttggttt caaggcgcat ccccacccag tgcacaagac tattgagatc 600 cacctcctgt tcgagcactg gctcaacctc tgtcgttctc cctccgccgt gcttttcatg 660 aaacagagca agttcgagaa gttgcagcac gaaaacgcca acttcgaagc gcttgccaac 720 tacaacctga ccgctcgtga cacgactcgt tatgagcagg tcgccgtcgc cccccccacc 780 caagccgtct ggtttatgca cgacgcgctg cagtacttct cactctccca agtggctgct 840 ttcttcgcgg actgccctca ccttgagaag cttttcgctt ccctcgtcgt ccctccggag 900 tcagacttca ccaacctctc ccttttcccg gaaatttacc ggtacagctt cgctggctct 960 cgcctcaact atcagttgga gggcaacccc ggccactcgt acagccagcc tcgtgaagcc 1020 ctcgaatggc tcaaaaccac caccattcgc tgcggcaacc tctacctcac cgtcaccaag 1080 ctcgagtctt ggggccccgt gcactccctg ctcatccagc gcggcaagcc atccgtgcat 1140 ctggagcatg acgaagtttc cttcgtcggc cctgacgctg ttgctctccc agaagccgcc 1200 gctctccgcc aagacctccg ccaccgcctc gtccctcgca cagtgtacga cgccctcttc 1260 gtttacgttc gtgcggtgcg cactctccgc accaccgacc ctgtcggttt cgtccgcact 1320 caaagcaaca aagcggagta tagctgggtc acctccgctg cctgggacaa cctccagcac 1380 ttcgtcactg aaacggcagc ccatcgggtt ccaaatcggc atttcttctt caactccact 1440 ttcgctaagt gccgctactg gtgctctcag cacaagctcg ggctgctcac ggtcaccact 1500 ccccctgcct gcggcctcac cctcttcacc ggggctaagt tggcctccgc catgagctct 1560 cgcctcaccg ccctcgccgt gttccatcat tgggtggtgc ctcccccaac cctcttcttc 1620 accccgaagg ctcctcttct ggccatccag ctcactcgtc ttccgcagcc actcttctct 1680 tctgtgccct tcttgcacaa gcctctcggc aagctctcgt tgaggcttct caaccgcttc 1740 ccttttctga ggcgcttctt ccccgacgcc ccgataccaa cctgggcccg cctgctcacc 1800 gtggccattg cgctctctcc agccgtctgg ctcgcgatcc gccacttcat tggccccgat 1860 gctcctcaag cgctcaacga ccactacgtg cgcttcttcc accctgaccg ctggcagctc 1920 accttcgaga gacaaccccg cttcgtagct ttggaccgca ccttcccctg gcctctgccc 1980 caagccccgg aacccaccga gccgagagat tcggacgtcc ccctcgaaac cgtcccgagt 2040 cctctacccg tcgtcgcacc tctgcctgcc ccagcaacct ccgtcccccc cgttgacacc 2100 tcagccacca ctgtctccgc tgttgagccc tctctcagca cggaaagcct caaaactgtt 2160 gaggctccct ccggcaccac cattctgcag ccccgtgagc tgaaagacac catctttcct 2220 cttcccgccg ccgctctcgc cgtcaccccg cctgagccag ccccagctcc cgctgaacct 2280 gtcagcgcct ccaccgtcct cggcaccgcc ccactctctc gcgacttgca caccgggcac 2340 gtctcaacgc ccgccactga accgggcctc gttgagccgg agcactctcc tctcgccgca 2400 gattcttcag ccaccggcga ggtctccgag tttttcaacc ttcaccccgc tgattggatc 2460 gctcccaccg ccacgtttct cgcccgccgt cgcggcgaga ccatttctgg agccaagtac 2520 ccagccatgg actgcctctt ggccgccgtt tcggctggag cgaacattcc gaaagacgct 2580 ctctggaaaa ccatctgctc ttacttcccg gactccatgc tgcgcgagga agacatagcc 2640 aagcatggcc tctccactca ccattttgct gccttggccc gtgagcaccg tctgcaggcc 2700 actttccact cagctggcaa ccagttcgtg cttggcgtcg agcacccttc tgtctccttc 2760 cacatcgacc acactcctga gtctgccacc gctcccggcc atttctctct gcgcgccgac 2820 gagcggcagc actctccgcg cctgctcggc ggccgcgcag ccgatctcgt tcatgcagct 2880 ctaaaattca aagtcggcag cgctgtgctt cccttccagc aagcgcacga ttacaccacc 2940 aacgtggctc gtgctaaaaa tttgatcagc aacatgaaaa atggctttga cggtgttctc 3000 gccaacatcg atccggcgca cactaatgag tcccgcgacc gtctcctgtc cttggacggc 3060 gccatggaca tagctgcacc gcgtgatgtc aagctcatcc acatcgccgg tttccctggc 3120 tgtggcaagt cttacccaat cgcccagctc ctcaagtctc gcgcattcaa gcacttcaaa 3180 attgcggtgc ccactgttga attgcgcaac gaatggaaag gtgtcctcaa agtcaaacct 3240 caggacaact ggcgcatcag cacgtgggaa tcaagccttc tcaaatccgc ccgcatcttg 3300 gtcatagacg agatttacaa gatgccaagg ggctatctgg acctggccat tcacgcggac 3360 cccacgatcg acttagtcat cgctttgggg gacccgctcc agggcgtcta ccattcaact 3420 cattctgact catccaacca tcgcctcagc agcgaggtca agcacctgca gccttacatg 3480 gactactact gcctctggtc ccaccgtgtg cctcaagata tcggcacgtt cttcggcatc 3540 aagtctactt ccaccgtccc aggcttcaag tcttaccaag ccaacattcc aagcaacctc 3600 cgccagttgg ccaactctca gtccgccgct aaagtcctca atcagtgcgg cttctcctct 3660 gtcaccatcg cgtcctccca gggatccacc tactctgcgc cggcctgcat ccatctggac 3720 cgccattcca tgtccctcag ccatgctcac tctctcgtcg ctctcactcg cagcaaaagc 3780 ggcgtcattt tcactggcga caagcgcgtt cttgaggccc caggcggcaa cctgctcttc 3840 tcttcttatt tccaggagaa aaaagttgac cttcgcgcgc tctttccaac agagttccca 3900 tgctgcccca ttctgctcga gcctctcaag cgccgcccca cagacctcac tggcggtgct 3960 cctttccctt tccgcgacga ggcgcgcgtc ttcaacccag aacgtcgcga cgacgtcttc 4020 gtcgaggccg ctgtcgtctg cggtgatggc tccagcaacg ctccccaggt cagcactcac 4080 ttcctccctg agactcgccg gcccctccat ttcgacctcc catccgcgaa acccgagttc 4140 gcggcccatg aggcccccgc tccgctcacc gacaccttca tcgagccggt ctaccctggc 4200 gagaccttcg aaaacattgc cgctcacttc ctcccggctc atgatccgga agtcaaagaa 4260 attctgttca aggatcagcg cagcaatcag ttccctttca tagatcagcc attccacgtt 4320 ggggctcagc ctgcttccct ttgcgccgca gtccatcact ccaagaagga tcccactctc 4380 ctcgcagcct ccatcgagaa aaggcttcgc tttcgggctt ctgacgcccc ttatcaaatc 4440 actgccaagg acgagatcct gggctccatg ctgttcgaag cccactgtcg cgccatgcgc 4500 cgggacccca acgtccgcgt accatttgat gaggccctgt tcgctgaatg catcgccctc 4560 aacgagttcg ctcaactcac atctaagact caggccgtga tcatggccaa ccatgagcgc 4620 tctgaccctg actggcgcta cactgcagtg cgtatattcg ccaagaacca gcacaaggtc 4680 aattctggct ccctcttcgg cccctggaaa gcttgccaaa ccctcgccct catgcacgac 4740 gccgtgatcc tgctcttcgg ccccgtcaag aagtaccagc tcatccacga tgagcgcgat 4800 cgccctgagc acatcttcat ctatgctggg cgcactcctc aggaaatgtc cgagtggtgc 4860 caaaagttcc tcaccccgcg ctccgccagc tcgcccgtcc cagtcatggt ttccggggac 4920 gactccctca tcggctgcca tccgcacttc gtcgcgaacg actacacagc gttcgatcag 4980 tcccaacatg gtgaagccgc tgttcttgaa cgcctgaaga tggaacgcgt caacatccct 5040 gagtggctca tcgccctgca cattatgatc aagacgcaca tcaccaccca gtttggccct 5100 ctcacttgca tgcggctcac aggtgaacca ggcacctact ttgacaactc cgattacaac 5160 ctggccgtca ttttcctcga gtattccatg tccgggcaat ggctgtccga aaacccgctc 5220 tggccagcca tcaagccgct cctggccctg cgcttcaaga aagaaaagac ccgctacggc 5280 aacttctgcg ggtactacgt tggcgcagcc ggcgcagttc gcatgcccag ggcactgttc 5340 gccaagatct tcatcgctgt tgaggacgcc tccatcgctg acaagatggc ttcttatgcc 5400 actgagttcg ccattgggca cagtctcggc gacgcgctct ggtccctcct ccctgtcgag 5460 gaggttgtct atcagtcggc cgtcttcgac ttcctttgcc gcaatgctcc gcgggaactc 5520 aaactgctct tcaagctcgg ccctgtcgag cgctctgttg ttgaagcagt ccaagaattt 5580 gccacctggg cttcttacgc cttctaccgc ttcctcaatt cagctcagcg caaggtgctc 5640 ctcactcgct ctccccagct ccacttcccg ggcgatgccc ccgaagtttc ccagcttcag 5700 ggtgaattgc ttcaaagctt ctcaatgatg caaccgaccc ttccactcac tggcggcctg 5760 cttctccctc ctgctgtcga cgctccaatg tctgatgact cgctcgctgg ccgcgcccgc 5820 tctcaacgcg atcctgatca tcgtgttgat cctcagcctt ctctgcctct ggctccctcg 5880 gtgcaggaaa cccccggcgg cccggcgatc acggtcccct tccaatgggt cgcacttgtt 5940 gtgaaatccg agtccaccat cttcaccgtt gatcccccgc gcgccaagtc tctcacccag 6000 ctcatcgggc cttaccgtca tgcccgtctc ctctctctcg aagccattct catgcccact 6060 ctgaacgcct tccaaaaccc cgtcacggtc cacatggtct ggaccgtcaa caccgtgcag 6120 cccgcctccg gggaagaact cttctacccg ggcggccagg ctctcactgt tggcggcccg 6180 gtctccatgt ccgcccttgc caccgtccca gccgacgtct cgcgcctgaa ccctgtcatc 6240 aagggcgccg tcgccttcct ggacactccc cgtctcaccg gcaccactat gaagtgtgcc 6300 aaatctgaaa cctcccccat ggcctacgtg gtcatccgcg ggaccctcgc cctctccggg 6360 cctgtgggta ctcgcctctc tgaataaagc ctccaatgcg cagcaatgcg gttctggtgc 6420 aggtcccaag cgacctgtgg cttaaataaa tgtttgtttt cttttccgtt tgtttgttta 6480 taaaaaaaaa aaaaaaaaaa aaaaaa 6506 //