ID FJ434664; SV 1; linear; genomic RNA; STD; VRL; 7722 BP. XX AC FJ434664; XX DT 25-MAR-2009 (Rel. 100, Created) DT 05-OCT-2012 (Rel. 114, Last updated, Version 3) XX DE Avastrovirus 3 strain C-NGB, complete genome. XX KW . XX OS Avastrovirus 3 OC Viruses; Riboviria; Astroviridae; Avastrovirus. XX RN [1] RP 1-7722 RX DOI; 10.1099/vir.0.008599-0. RX PUBMED; 19264607. RA Fu Y., Pan M., Wang X., Xu Y., Xie X., Knowles N.J., Yang H., Zhang D.; RT "Complete sequence of a duck astrovirus associated with fatal hepatitis in RT ducklings"; RL J. Gen. Virol. 90(Pt 5):1104-1108(2009). XX RN [2] RP 1-7722 RA Fu Y., Pan M., Wang X., Xu Y., Xie X., Zhang D.; RT ; RL Submitted (03-NOV-2008) to the INSDC. RL College of Veterinary Medicine, China Agricultural University, YuanMingYuan RL West Road No.2, Beijing, Beijing 100193, China XX DR MD5; 2713df784cb6710022183e658af92e99. DR EuropePMC; PMC3502403; 22998755. DR EuropePMC; PMC4646697; 26571270. DR RFAM; RF00164; s2m. XX FH Key Location/Qualifiers FH FT source 1..7722 FT /organism="Avastrovirus 3" FT /host="duck" FT /strain="C-NGB" FT /mol_type="genomic RNA" FT /country="China" FT /isolation_source="liver" FT /collection_date="09-Jul-2008" FT /db_xref="taxon:1239439" FT CDS 23..3745 FT /codon_start=1 FT /product="ORF1a" FT /db_xref="GOA:C0JRM9" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:C0JRM9" FT /protein_id="ACN82427.1" FT /translation="MAQSGENKAFQSLKRREERRDGKRSPQIPAGLEKVFNFQGMAELY FT DRMRGLYGDTPAWKALMSCSAIYLKDVKTAFGVRDGRIGLFMASSPSTASWSQDAGASI FT LTINESACLRAQEAKWERLQVSLRANSSLVNQIMEKNRIAKEKMEELEQLQKKMDNMVE FT NNKLIFQRIEEANQSKLDAMGAKISKLRHENHQWFLKVEKQDNLIESLRKQIDTQRVTY FT KKMAWDFMAWVLLAFLLFGFLTTTQAVELNKTEYNVIYADVYGELYTDYPTSQPWDESQ FT IPKTCERPDFGCMIVDTWLPLPLLKFEGIMQKCYNTHGNVIARSTFNATYLLMDCVKTA FT TYFMDQHDYVENYHWCRRRLATLIAANCEGERTIDKFWSQIMEAIDASRSFFQSVKKYQ FT IDVWIIAIFSIVIAGNKEKLLTLLPFVALGWWFKLPIFLLTTAANFFPTTALPFVAFQV FT IFPEMVMMTTFCMWLTLVLVAFFWSEGLNILVEVSFSIFYTISFFMWAMSLNVCLHLQL FT TLAYQILLFCISLSIYCGTKFACSQVTIVHPDGTTEKITRVAKVKKAVVNQCKRGVAYL FT QSRGIIPSSPVKVQSIVMVEGKNGTGTGWRFMNWICTAGHVTRGSEFATIKYENIAVKV FT KKEKEIQIFECVDTLAFFKLPKELQSVKPLRLAKEVKSDYMSLHCWCPNFQNHVTYSGW FT CIVDGIFLNNAFNTQFGNSGAPYCDRDGKLVGMHLGSQGVTSQGVVLVDVLQRLNQLTV FT QQCKDCDDDEFERQNTPLPVGFDLDLFLSKVIEGTKISHQALLKNVEELNEKVLLMEKN FT QENQISSVLEKFSGMFENTSEIQRAMVAAMEKMSLRVQKLEEERSQEPNFSTVPSFVEA FT LTKRIEYLEGENKTILEKLAEVTTAVGERVKEVTLAVNTLVEEKKKGKTKRTARGQKHA FT ANKKFLTKGHFMKMKVLAEEEYQRMLDEGWSADEIRDVVNSLREQAWNSYVMDNDIDEE FT GEEEWYDEMLQNDAINEEIDRRIEQAMEDMGEPIYQKKRLTFVDQALLHIIRIKKNKVK FT TVKMEVQKECEEQLKKQFEHAVSPNDIKEGTSVAILSAGEDVRCVENKEINFNAIRSID FT MPNQKDKELVMGIKKTVISTGDDNKKNILREKTTDLVGSILPKNADGKLEKQNVPQQVP FT LEQRKRGCQWCNNPKPHNFQACKRRSEKCFCVFCGIMHSENEGHSRKIECIKCKQTFKG FT VEGLEEHVINGCSKN" FT CDS <3736..5286 FT /codon_start=1 FT /product="ORF1b" FT /db_xref="GOA:C0JRN0" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:C0JRN0" FT /protein_id="ACN82428.1" FT /translation="KKLDEGPETSWPQFETPPEGSHIFDWEKDILPPIGKTALPESVKL FT LGHIPVDKLVSRTKKVNDPLLGIIRGWEQDQYTSTTWTVEAYTKMFEKFHYRDPINFVE FT EYAEFVILADNCTLKEHEYMANSCVLPIMSTEKNVESTPAYPKFQFFDSEREYLETCGW FT KEYIEVYNNKETLKHRPLWWCFLKNETLKVSKVKNNDIRMILCTDPVYTRIGATFEQDQ FT NARMKQQTETRAAQVGWTPFFGGINRRVQRLMKIKNPQFVEMDWTRFDGTIPKALFYRI FT RQMRFFFLRDEDKTPERKELYNWYVKNLLEKIILLPTGEVCQARKGNPSGQFSTTVDNN FT MVNCWLTNFELAYLHNKQKGRLPTVKELRENSAFICYGDDRLLSVSEDFVKYESDTIIK FT MYEEIFGMWVKPENVKVQKDPEGLSFCGMTLVRNQHGIFVGVPNVDKILSTLRNPNRKL FT PNIESLWGKLVSLRILCQNAPENVRDYLDAQINSVEQYAEKENINLPEVGPDFYEKIW" FT CDS 5310..7505 FT /codon_start=1 FT /product="capsid protein" FT /db_xref="InterPro:IPR004337" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR032268" FT /db_xref="UniProtKB/TrEMBL:C0JRN1" FT /protein_id="ACN82429.1" FT /translation="MAGEALVVKKKTTTTRRPRGRSRSRSRSRSRSRSRTRTKKTVKIV FT EKKPEKSILKKIEQHEKKDQRELKKIKKKVQGPPVNDKMTTVVTLGQITGNKDNVLERK FT HKYFLNPLMMKSQENGQVATPLTIRASQYNLWRLVRLHVRLVPLAGKANILGSVVFLDL FT EQEANTAGPESVDTIKARPHIEVPIGGKIVWKVHPRSMQGPRQGWWNVDPGDSPTDSLG FT PALNMWTYLKTVNALQSQSGTQAPYTSALFLVEVLVTYQFSNYGPKPALSQMISNNYKP FT SASANAVLGNASDGAVVVKISGALLRDLEAVEPKYRHPANAQTSGVGEVFWAVSTEVVN FT TVAAAIPGWGWLLQGGWFVIRKLFGAANDANGNYLVYSSVADAQQDNRIYTTVTGSPQL FT TNTDIKLVQLTQPNVNVAATGGTVGIALERYLPLPLAPSQYTPHMVYDFRGQRISTTES FT AALMIAAIPQANNQSRFNGRLNFNVGYKDDNGRQKSFNLGENDWYSILDITQTGVVFSK FT AIAGTGVVQTMRTLKQHMKPEEEPSVRRYSPNTTTEGQVKDRLNLRENDPVMSIGDSDG FT RRGALFYRTSDERFIILISNASDPGPQFQNIRMKYLYNWSLSDNQTSFQNNIRTVQFAN FT ADENEEQQEVEDDDVLSDVTSLFEQADLEDEPEFKFKMAIQTSKHLEEEKNYWKTQCER FT MMMEKALTGTTQPLVRFEKAGLWAEQQQAASSRGHAE" XX SQ Sequence 7722 BP; 2540 A; 1396 C; 1822 G; 1964 T; 0 other; ccgaagtggg cgagttgggg ccatggccca gagcggtgaa aacaaagctt ttcaatcttt 60 gaaacgcagg gaggagaggc gtgacggtaa acgttcgcct caaatccctg caggccttga 120 gaaggttttt aacttccaag gcatggcgga gttgtacgac cgtatgcgtg gtctctacgg 180 tgacacccca gcctggaaag ctttgatgtc gtgcagtgcc atctatctga aggatgttaa 240 aaccgccttt ggagtgcgcg acggccgcat tgggttattc atggcttcct cgcccagcac 300 cgcgtcctgg tcacaggacg cgggtgcatc tattcttaca ataaatgagt cagcttgctt 360 gagagcgcag gaagcaaaat gggaaagact tcaagtttcc ttgcgcgcca attcttcatt 420 ggtaaaccaa attatggaaa aaaataggat tgccaaagaa aaaatggaag aactcgaaca 480 actccaaaag aaaatggaca acatggttga aaacaacaag ctgatcttcc aacgaattga 540 agaagcaaat caaagtaagc tggatgcaat gggagcaaaa atctcaaaat tgagacatga 600 aaatcatcag tggtttctta aagttgaaaa acaggacaac ttgattgagt cacttagaaa 660 acaaattgac acacagagag tgacttacaa gaaaatggct tgggatttca tggcatgggt 720 cctgctggct tttcttttgt ttggctttct aacaacaaca caggcagttg agttgaataa 780 aactgagtac aacgtgattt atgctgatgt ttatggtgag ttgtacactg attatccgac 840 atcacaaccg tgggatgaaa gccaaattcc gaaaacttgt gagagacctg attttggttg 900 catgattgtt gacacctggc tgcctttgcc actcttgaaa tttgagggaa taatgcagaa 960 atgttataac acccatggta acgtgatagc acgtagtaca tttaatgcca cctacctgtt 1020 aatggactgt gttaaaacag caacttattt tatggaccag catgattatg ttgaaaatta 1080 tcattggtgc aggaggaggt tagcaacact cattgctgct aattgcgaag gtgaaagaac 1140 cattgacaag ttttggtcac aaatcatgga ggctatagat gctagtagaa gttttttcca 1200 gtcagttaag aaatatcaga ttgacgtttg gataatagcg atttttagca ttgttattgc 1260 tggtaataaa gaaaaactgt taacattgtt gccctttgtg gccctaggtt ggtggtttaa 1320 attgccaatt ttcctattga caacagcggc taattttttt ccaacaacag cactaccctt 1380 tgttgcattc caggtgattt tcccagagat ggtaatgatg acaacgtttt gtatgtggct 1440 aaccttggtg ttagtagcat tcttttggag tgagggcttg aacattctcg tggaagttag 1500 ttttagtatt ttttatacta tctccttctt tatgtgggcg atgtcactga atgtgtgcct 1560 acatttgcag ctcactctgg catatcaaat cttgcttttt tgtatatcat tatccatcta 1620 ttgtggaaca aaatttgctt gtagtcaagt aacaattgtc catccagatg gaacaactga 1680 aaaaataaca cgggtagcta aagttaaaaa ggcagttgtc aaccagtgca agcgtggtgt 1740 cgcatatttg cagtcaagag gcataatacc atctagccct gttaaggttc aatcaattgt 1800 tatggtagaa ggaaaaaatg gaactggaac tggctggaga ttcatgaatt ggatttgtac 1860 tgcaggacat gttactcgtg gttcagaatt tgctaccatt aagtatgaga acattgctgt 1920 taaagtcaag aaagaaaaag aaatccagat ttttgaatgt gttgacactt tggctttctt 1980 taaactgcca aaggagttgc agagtgtgaa gcctctaaga ctcgcgaaag aagttaagag 2040 tgattacatg tctctacact gttggtgccc taattttcag aatcatgtta catatagtgg 2100 ttggtgtatt gtggatggaa ttttcctaaa caacgctttt aacacccagt ttggaaacag 2160 tggggctcca tactgtgata gagatggaaa acttgttggg atgcatttgg gttcacaggg 2220 agtgacatca caaggggtcg tcttggtcga tgttttacag cgtctaaatc aactgacagt 2280 acaacaatgt aaagattgtg atgatgatga atttgagagg cagaacactc cattgccggt 2340 tggatttgac ttggatttat ttctctcgaa ggttattgag ggtacgaaaa tttcacacca 2400 agcattgctt aagaatgttg aagaactcaa tgaaaaggtc ttattgatgg agaaaaacca 2460 ggaaaatcaa atatcaagtg tcttggaaaa attttccggg atgtttgaaa acaccagtga 2520 gatacaaaga gcaatggttg ccgcgatgga gaaaatgagt ctgagagttc aaaaactgga 2580 ggaagaaaga tctcaggaac ccaatttttc aacagtgcct tcttttgttg aagcactcac 2640 caagaggatt gaatatcttg aaggtgagaa caaaactatt ttggaaaaat tggcagaagt 2700 gacaacagcg gttggagagc gagtcaagga agtcacgctt gcggttaaca ccctagtcga 2760 ggaaaaaaaa aaagggaaaa caaagaggac agcaagagga caaaaacacg ctgcaaataa 2820 gaagtttttg acaaaaggac acttcatgaa aatgaaagtc ttggcagagg aagaatacca 2880 gagaatgctt gatgaaggct ggtctgcaga tgaaattaga gatgtagtga atagccttcg 2940 agaacaggcc tggaactcct atgtaatgga taatgacatc gatgaagaag gtgaagaaga 3000 gtggtatgat gagatgttgc aaaatgatgc cattaacgag gagattgata ggagaattga 3060 acaggctatg gaggatatgg gagaacccat ttatcaaaaa aaaagattga ctttcgtgga 3120 ccaagctttg cttcacatta ttaggattaa gaaaaataag gtcaagacgg tgaaaatgga 3180 ggtccagaaa gagtgtgagg aacaacttaa gaagcaattt gaacatgcag tttccccaaa 3240 tgacatcaag gaaggaacat cagttgcgat cctttctgca ggagaggatg tccgttgtgt 3300 tgaaaataag gaaataaatt ttaatgccat aagatcaatt gacatgccaa accagaaaga 3360 taaagaactt gtcatgggaa taaagaaaac tgtgatttcc accggtgatg ataacaaaaa 3420 gaacatcttg agagagaaaa caactgatct tgttggaagc attttgccaa aaaatgctga 3480 tggaaaactc gaaaaacaaa atgtgccaca gcaggttccc ttggaacaga gaaagagagg 3540 gtgccagtgg tgcaataacc caaaacccca caattttcag gcttgtaagc gcagaagcga 3600 aaaatgcttc tgcgtgtttt gtggaataat gcactctgag aatgagggac attcaaggaa 3660 aattgagtgc attaaatgta agcagacttt taaaggggtt gagggattgg aggaacatgt 3720 catcaacggt tgttcaaaaa actagatgag gggcctgaaa catcatggcc ccaattcgaa 3780 acaccaccag agggttcaca catttttgat tgggaaaaag atattttacc acctatagga 3840 aaaacagcat tacctgaaag tgttaaattg ctgggacaca ttccagtgga taagcttgtt 3900 tcaagaacta aaaaggttaa tgatccattg ttaggaatta taagggggtg ggaacaagac 3960 caatacacct caactacttg gactgtggaa gcatatacca aaatgtttga aaaatttcac 4020 tatagagatc caataaattt tgttgaggaa tatgctgagt tcgtgatact tgcagataac 4080 tgtacgctca aagaacatga gtatatggca aacagttgcg ttttgccaat aatgtctaca 4140 gaaaagaatg ttgaatcaac accagcgtat ccaaaattcc aattctttga cagtgaaagg 4200 gagtatcttg aaacatgtgg gtggaaagaa tatattgaag tttataacaa caaggaaaca 4260 ctcaagcata gaccattatg gtggtgtttt cttaagaatg aaactttgaa agtttcgaaa 4320 gttaaaaaca atgatatccg tatgatattg tgtactgatc ctgtttatac aagaattgga 4380 gcaaccttcg agcaagatca gaacgcgaga atgaaacagc aaacagaaac cagagctgcc 4440 caagttggtt ggaccccttt ctttggaggg attaatagaa gagtacagag attgatgaag 4500 atcaagaatc cacaatttgt ggaaatggac tggacgcgct ttgacggtac aatcccaaaa 4560 gcgcttttct accgcataag acagatgagg tttttcttct taagagatga agacaaaaca 4620 ccagaaagga aagaattata taattggtat gttaaaaatc tacttgagaa gataattttg 4680 ttaccaactg gagaagtctg tcaggcgcgc aaagggaacc cttcagggca gttttcaaca 4740 actgtggata acaacatggt aaattgctgg ttgacaaact ttgagttagc atatctccac 4800 aacaaacaaa aagggaggct tccaacagta aaagagctcc gagaaaattc agcattcatc 4860 tgctatggtg atgatagact cctttctgtc tctgaggatt ttgttaagta cgagtcggac 4920 actataatca agatgtatga agagattttt ggcatgtggg tgaagcctga gaatgttaaa 4980 gttcaaaaag atccggaggg actctctttt tgtggaatga ccttagttag aaatcaacat 5040 gggatctttg ttggagtccc gaatgtggac aaaatcctct ctactctgag aaatccaaac 5100 agaaagttac caaacattga gtctttgtgg ggaaaacttg tctccttgag aatcctttgc 5160 cagaatgctc cagagaatgt tagggattat ttagatgccc aaattaactc tgttgagcag 5220 tatgctgaga aagaaaacat caacttacct gaagtcgggc ccgacttcta tgaaaaaatt 5280 tggtagcttg gtgggaccga aatatcagca tggctggtga ggcccttgtg gtcaagaaaa 5340 agacaacaac gacaaggaga ccccgaggtc gttcgcgatc tcggtcccgt agcaggagta 5400 ggagcaggag tagaactaga acaaagaaga cagtcaagat agttgagaag aaaccagaaa 5460 aatccatcct taagaaaatt gaacagcatg aaaagaaaga ccagagggaa ttaaagaaga 5520 tcaagaaaaa ggtgcagggt ccccctgtca atgataaaat gacaacagtg gtcacacttg 5580 gacagattac agggaataaa gacaatgttc tggaaagaaa acacaagtac ttcctcaatc 5640 cactcatgat gaagagccag gaaaatgggc aggtggcaac gccactgaca ataagagcat 5700 cacaatataa cctttggaga ttggtgagac tgcatgtgag gctggtccca cttgcaggta 5760 aagctaacat ccttggttca gtggtatttc tggacttgga acaagaggca aacaccgccg 5820 ggcccgaatc agttgacacc ataaaagcgc gcccgcacat agaagttcca attggcggca 5880 aaattgtctg gaaagtccat cccaggagca tgcaaggtcc tagacagggg tggtggaatg 5940 ttgaccctgg agatagtcca acagattctc tgggaccagc actaaatatg tggacatatc 6000 tcaaaacagt gaacgcactg caaagccaaa gtggaaccca ggcgccatac accagtgctc 6060 tctttttggt tgaggtactt gtcacttacc aattttcaaa ttatggaccc aaacctgcac 6120 tttcccaaat gatttcaaac aactacaaac cctctgcctc agcaaatgca gtacttggga 6180 atgcatcaga tggtgctgtt gtggtgaaga tcagtggtgc gctgttgaga gacctggagg 6240 ctgttgaacc gaaatacaga catccagcta atgcacagac tagcggggtt ggagaggtgt 6300 tctgggcagt ttcaactgaa gtggttaaca cagttgcagc agcaattcct ggatggggtt 6360 ggttactcca aggagggtgg tttgttattc gaaaattgtt tggtgctgcc aatgatgcca 6420 acggaaatta cttggtgtac tcttcagtgg ctgatgcaca acaagataac aggatttaca 6480 caacagtaac aggttcaccg caactgacta atactgacat aaaattggta cagctgacac 6540 aaccaaatgt gaatgttgca gccacgggag gaacagtggg tattgcacta gaacgttact 6600 tgcccttgcc tctcgcgcca tcacaatata caccacacat ggtttatgac tttcgtggtc 6660 aaagaatcag caccacagaa tcagcagcac taatgattgc agctatacca caagcaaata 6720 atcagagtag gttcaatgga aggttgaatt ttaatgttgg gtataaagat gacaatggca 6780 gacagaagtc ttttaatctc ggagaaaatg attggtattc aatcttggac atcacacaga 6840 ctggggtagt gttttccaaa gcaattgcag gcacaggagt ggtgcaaacc atgagaacac 6900 tcaaacagca tatgaaacca gaggaagagc catcagtcag gagatacagc cctaacacta 6960 ccactgaggg ccaggtgaaa gacaggctaa atctcagaga aaatgatcca gttatgtcaa 7020 ttggtgattc tgatggcaga aggggagctc tcttttacag gacctcagat gaaagattta 7080 ttatactaat atcaaatgca tctgaccctg gcccccaatt tcaaaacatc aggatgaaat 7140 atctgtataa ctggtccctg tcagataatc aaacatcctt ccaaaacaat ataagaacag 7200 tacaatttgc aaatgctgat gagaatgaag aacagcaaga ggtagaggat gatgatgttc 7260 tttcagatgt cacctcactg ttcgaacaag cagaccttga ggatgagcct gaatttaaat 7320 ttaaaatggc catccaaacc tccaaacatc ttgaggagga gaagaactac tggaaaaccc 7380 agtgtgagag gatgatgatg gagaaggccc ttacgggcac cactcaacct ctcgtccggt 7440 ttgagaaagc tggactttgg gcagaacaac aacaagctgc cagcagccgc ggccacgccg 7500 agtaggatcg agggtacagc tgcactttct catgcgggaa ataatcgtaa tcaggttatt 7560 ctccctaagc aaaattgacc ttcgggtccc cgaccatgtg gaatcaccat gtgggtcaca 7620 gggtttccgt gtcaggaaat caacctggca tattgccctg tgttttcggg aggtttagtt 7680 ttttaaacca attagatttt gaagtagatt caattggcat tt 7722 //