ID FJ403375; SV 1; linear; genomic RNA; STD; VRL; 3491 BP. XX AC FJ403375; XX DT 16-DEC-2008 (Rel. 98, Created) DT 16-DEC-2008 (Rel. 98, Last updated, Version 1) XX DE Tobacco streak virus isolate Illinois segment RNA 1, complete sequence. XX KW . XX OS Tobacco streak virus OC Viruses; Riboviria; Bromoviridae; Ilarvirus. XX RN [1] RP 1-3491 RA Jossey S., Ghabrial S.A., Domier L.L.; RT "Complete nucleotide sequences of RNAs 1, 2 and 3 of an Illinois soybean RT isolate of Tobacco streak virus"; RL Unpublished. XX RN [2] RP 1-3491 RA Jossey S., Hobbs H.A., Ghabrial S.A., Domier L.L.; RT ; RL Submitted (20-OCT-2008) to the INSDC. RL Dept. Crop Sci., University of Illinois, USDA-ARS, 1102 S. Goodwin Ave., RL Urbana, IL 61801, USA XX DR MD5; 1e0ec3afcbca85917bf06b2a58b495fa. DR EuropePMC; PMC4223465; 25377714. XX FH Key Location/Qualifiers FH FT source 1..3491 FT /organism="Tobacco streak virus" FT /segment="RNA 1" FT /host="Glycine max (soybean)" FT /isolate="Illinois" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="Aug-2006" FT /db_xref="taxon:12317" FT CDS 38..3322 FT /codon_start=1 FT /product="replicase" FT /db_xref="GOA:B7TX62" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B7TX62" FT /protein_id="ACJ38087.1" FT /translation="MDSLSLPTVSDVVVPALNVDNLIRDYVSNVRADDSNNVSRFLGEV FT ALKEIKSQVDTSNGDFQKLNVGFRLTPDEKNALKANFPGLEIAFRDSCHSSHSFAAAHR FT VCETLDIYNRFKTKTERIIDLGGNYVTHAKQGRSNVHSCCPILDVRDGARHTDRYISLA FT ASVENRHRELPVDFCCHKFEECDVKAPFAMAVHSISDIPISTVATHCVRRGVRKLIASV FT MMDPLMMLYDKGHIPLLNVDWEKEDVEETGKTLIHFHFVDAPGLSYSHDFDTLSQYMVT FT NQVIVNNSYSFRVERTACLSGVYIVEMTLSMTDGHSLAYLKPMRDVSCAWLSSLRKKVF FT VKLAVPISAEWYTEQFEVRYALMDESLVRYVSEAAFRQFSKTKDPETLVQYIATMLSSS FT SNHVVINGITMRSGSPIKFDEYVPLAVTFYVMAAWRYKMIAPGIDAVKTRTEKNVDILD FT EKGLIKEDFNVVNALLEDAGLIEPKLPHFTDVIKTAGLRGFGRKTIEKTRDDVSLIKPR FT SLLREVIYTVRSVFGLTILDSDYNLVSGIPSHMKATHVWSVFVGNLAFPSCLNVNECVN FT ELLVNHMEMMEETKKEETRQQAFKDARDRALMTIAKAIEKDQTIKDGLLPILDLCKIKE FT ELTAASNSLSLTPEAIEQTDSRLMKASGSDVNPYADSIKEAIHYFNEVEVANTRNLRSL FT GIYLGWSIPKNKQTYDALRGRNESVRVYVPYENKWYPSAPTSQYERAMTVDGYVSLQWN FT SEAITDGCRREISKYHVLVVDDSCIFCSGQRMIPALEAALKLVPTFKITIVDGVAGCGK FT TTHLKKIARIDSSAAGSPDLVLTSNRSSSDELKEVIDCPDVMKYRIRTVDSYLMLKSWF FT SAERLLFDECFLTHAGCVYAAATLAQVKEVIAFGDTEQVPFISRLPEFRMEHHKVKGKI FT DVQTTTYRCPRDATACLKKFFYKNKTVKSASVVDRSLELCPIQSVIQIQPERDVLYMTH FT TRADKETLMRIPGMPKDRIKTTHEAQGETWDHVVMFRLSKTTNLLHSGKGPDLGPCHNL FT VAISRHRKSFRYFTVAPHDNDDQIVKCINYARSLSSGDLDGVRVLI" XX SQ Sequence 3491 BP; 979 A; 691 C; 816 G; 1005 T; 0 other; gtattactgt tttgtatccg aaacagaacc tccagaaatg gattccttat ctttacccac 60 cgtgagtgat gttgttgttc cggctttgaa cgttgacaat ctcattcgag attatgtcag 120 taatgtgaga gccgatgata gcaacaacgt cagccgtttc ctcggtgaag tagccctgaa 180 agaaattaaa tctcaggtag acaccagtaa tggtgatttc cagaagttga acgtcggttt 240 ccgtttgact cctgatgaga aaaatgcact gaaagcgaat tttcccggtc tcgaaattgc 300 gtttagagac tcgtgtcatt cgtcacacag ttttgccgca gctcatagag tctgcgagac 360 cctagacata tacaatcggt ttaaaacaaa aaccgagcgc attatcgatc ttggcggtaa 420 ctatgttaca cacgccaaac aaggtcgttc taatgtgcat tcctgctgtc ccatccttga 480 tgttagggac ggtgctaggc ataccgatcg gtatatatct ttagctgcct ctgttgagaa 540 tcgccacaga gagttaccag ttgatttctg ttgccataag tttgaggagt gtgatgtcaa 600 ggcacctttt gccatggctg tccattccat cagtgacatt cccatctcaa cggtcgcgac 660 acattgcgtt aggcgtggtg tgcggaaact tattgcgtcc gttatgatgg atccacttat 720 gatgctttat gacaagggtc atataccttt actcaatgtt gattgggaaa aagaggacgt 780 tgaagaaacg ggaaaaacac tcattcattt ccattttgtt gacgctcccg ggttgagcta 840 ttcacacgat tttgatacac tgtcccaata catggttaca aaccaggtta ttgttaataa 900 ttcctactct tttagggtag agaggacagc ctgtttatca ggtgtgtata tcgtggagat 960 gactttgtct atgacagacg gtcattcttt agcttacctg aagcccatgc gtgatgtttc 1020 atgcgcttgg ttgtcaagtt tgaggaagaa agtcttcgtt aaattagccg tacctattag 1080 tgccgaatgg tatactgaac aattcgaagt taggtacgcg ctaatggacg agtcattagt 1140 tcgctatgtt tccgaagctg ctttccgaca gttttcgaag acaaaagacc ccgaaacact 1200 ggttcagtac atagcaacta tgttatcttc ttcatcaaat cacgtggtca taaacggaat 1260 aacgatgcga agtggtagcc ctataaaatt tgatgaatat gttccattag ccgttacttt 1320 ctatgttatg gccgcgtggc gttacaaaat gattgcccct ggtatcgatg ctgtaaaaac 1380 aagaaccgag aagaacgttg atattctcga tgagaagggt cttatcaagg aagactttaa 1440 tgttgtcaat gcgcttcttg aagacgctgg gttaattgaa cccaagttgc cccatttcac 1500 ggatgtcata aaaaccgcag gactccgagg atttgggagg aaaacgatcg aaaaaaccag 1560 ggatgatgtt tcattgataa aaccaaggag cctgttgcgt gaagtgattt acacggtccg 1620 aagtgttttc gggctcacga ttttagactc ggactacaat ttggtttccg gtattccttc 1680 tcacatgaag gcgactcatg tgtggtccgt ttttgtcgga aatcttgcat tcccatcttg 1740 cctcaacgtc aatgagtgtg ttaacgagtt acttgttaat cacatggaaa tgatggaaga 1800 gacgaagaag gaagaaacac gtcaacaggc ctttaaggat gccagagatc gtgctctgat 1860 gacgatagcg aaagccattg agaaagatca aactatcaaa gatggtttgt taccgattct 1920 tgacctttgt aaaattaaag aagaattgac ggcggcctcg aattccttga gcttgactcc 1980 agaggccatt gaacaaacag attcgagatt gatgaaagcc tccggaagcg acgttaatcc 2040 atatgccgat tcgataaaag aagccatcca ttactttaat gaagtagaag tggctaatac 2100 gagaaatctt cgcagtctgg gaatttatct tggatggtct attcccaaga ataaacagac 2160 ttacgatgcc ctacggggta ggaatgaatc tgtcagggtg tatgtaccat atgaaaataa 2220 atggtacccc tctgcaccca ccagtcagta tgaaagggct atgactgttg atgggtatgt 2280 ttcgcttcaa tggaattctg aagcgattac cgacggttgt agacgtgaga tatcaaaata 2340 ccacgtcttg gttgtcgatg attcgtgcat tttctgttca ggtcagagaa tgatcccagc 2400 tttagaagct gccttgaaac tggtcccaac ctttaaaatc acaattgttg atggtgtcgc 2460 gggttgtgga aagactacac atctgaagaa gattgcacgc attgattcaa gcgctgcagg 2520 tagtcctgat ctggtactga cgagtaatcg tagttcatca gatgagctca aagaagttat 2580 cgactgtcct gatgtgatga aataccgcat tagaacggtc gatagttatt tgatgctcaa 2640 atcctggttt tcggctgagc gtctattgtt tgatgaatgc ttcttgacgc atgcgggttg 2700 cgtgtatgca gcagccactc tggctcaggt gaaagaagta attgcttttg gtgacacaga 2760 gcaagttcct ttcatatcta gattaccaga gtttcgcatg gaacatcata aggttaaagg 2820 gaagattgat gtacaaacga ccacttatag atgtccaaga gatgccacag cttgtttaaa 2880 gaaatttttc tacaaaaaca agactgtgaa gtcagcgagc gttgttgatc gctcgcttga 2940 attgtgccca attcaaagtg tgattcaaat tcaaccggag cgtgatgttt tgtacatgac 3000 acacacgcga gcagataagg agaccctgat gaggattccc gggatgccga aagacaggat 3060 aaaaaccact catgaagccc aaggagaaac ctgggatcat gtggtaatgt ttcgtctgtc 3120 gaagactaca aatctgctac attcgggtaa gggacctgat ttaggtccat gtcacaattt 3180 ggttgccata tctagacatc ggaaatcatt taggtacttt acagttgcgc ctcatgataa 3240 cgatgatcag atagtgaagt gtatcaatta cgctagatcc ttaagttcag gggatttaga 3300 cggggttcgt gttttaattt gatacaatat gtttaatgta ctccctctat agagagttgc 3360 cgcagatttt ctgcgaagtt tcggaactgt attttgccgg tggataggcg ggtgtagtgc 3420 ttctccaaca cacttccact gatgctgttt atatctaatg atataaacaa tgcctccttt 3480 aaaggagatg c 3491 //