ID   FJ390401; SV 1; linear; genomic RNA; STD; VRL; 2073 BP.
XX
AC   FJ390401;
XX
DT   16-DEC-2008 (Rel. 98, Created)
DT   16-DEC-2008 (Rel. 98, Last updated, Version 1)
XX
DE   Soybean dwarf virus isolate Carroll minor coat protein, coat protein, and
DE   P4 genes, complete cds.
XX
KW   .
XX
OS   Soybean dwarf virus
OC   Viruses; Riboviria; Luteoviridae; Luteovirus.
XX
RN   [1]
RP   1-2073
RA   Thekke Veetil T., Hobbs H.A., Domier L.L.;
RT   "Sequence diversity of s of Soybean dwarf virus isolates from the
RT   midwestern United States";
RL   Unpublished.
XX
RN   [2]
RP   1-2073
RA   Thekke Veetil T., Hobbs H.A., Domier L.L.;
RT   ;
RL   Submitted (16-OCT-2008) to the INSDC.
RL   Dept. Crop Sci., University of Illinois, USDA-ARS, 1102 S. Goodwin Ave.,
RL   Urbana, IL 61801, USA
XX
DR   MD5; 2d6120bc59318de9b2dc4ef5e259bac3.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2073
FT                   /organism="Soybean dwarf virus"
FT                   /host="Glycine max (soybean)"
FT                   /isolate="Carroll"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collection_date="Aug-2007"
FT                   /db_xref="taxon:12049"
FT   CDS             1..2073
FT                   /codon_start=1
FT                   /transl_except=(pos:601..603,aa:OTHER)
FT                   /product="minor coat protein"
FT                   /note="readthrough protein; translated by readthrough of
FT                   in-frame termination codon"
FT                   /db_xref="GOA:B7TWC5"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR002929"
FT                   /db_xref="UniProtKB/TrEMBL:B7TWC5"
FT                   /protein_id="ACJ24825.1"
FT                   /translation="MVAVSNVTIQRRRNRRAARSAPRVQLMAIPTTTGATQRRRRQRRR
FT                   RRNNRGGGNISGGSGKAHTFQFSKDGINGSSKGTITFGPSLSECKPLSDGILKAYHEYK
FT                   ITSILLQFISEASSTSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTKVINGLE
FT                   WHDTSEDQFKVHYKGNGDAKIAGSFKITIVVLTQNPKXVDGEPGPKPGPDPTPPPAPPP
FT                   EPTPAKHERFIVYTGTLSTLISARQNSDSISLYSIRDQRVRYIEDENANWTYIKAQWYS
FT                   QNSVEAVPMFIYPVPQGTWSIEISCEGYQATSSTTDPHRGKSDGMIAYDDDQNKVWNVG
FT                   VQNNVTISNNKADADWKYGHPNLTINGERFDQQQVVEKDGTVSFHLVTTGPNASFFLVG
FT                   PPVKKIAKYNYCISYGAWTDRDMEFGMVSVVLDEHLEGVRGSQYVRKTLRPGHISVNRS
FT                   HRLQEMPPTREDFSEEDSSSSDSNTYKTDNSPLTVHLVKAGDEENYTTDRSDDVEPTLH
FT                   DADVMKFSGFVGAKDRFVLQGADPIGPGDRSVRRFRPSATLKSAFHSGPTPDELYNAGA
FT                   EQADHDFEHFVSRGKEKLQDEDPMAKLEREAEDLKPDSDNEDNDYDRTAPVFNPADGDP
FT                   WSGINIKPRLKDQDMRSTLSTGTLKGGSLKPKKEPAPRFEPAPKSVLDRIRRRQV"
FT   CDS             1..603
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="major capsid protein"
FT                   /db_xref="GOA:Q3YB88"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:Q3YB88"
FT                   /protein_id="ACJ24823.1"
FT                   /translation="MVAVSNVTIQRRRNRRAARSAPRVQLMAIPTTTGATQRRRRQRRR
FT                   RRNNRGGGNISGGSGKAHTFQFSKDGINGSSKGTITFGPSLSECKPLSDGILKAYHEYK
FT                   ITSILLQFISEASSTSSGSIAYELDPHCKYSEIQSLLNKFSITKSGSKRFPTKVINGLE
FT                   WHDTSEDQFKVHYKGNGDAKIAGSFKITIVVLTQNPK"
FT   CDS             17..586
FT                   /codon_start=1
FT                   /product="P4"
FT                   /note="putative movement protein"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:B7TWC7"
FT                   /protein_id="ACJ24824.1"
FT                   /translation="MSQYNDDAIVEPHEALHEFSSWLFQRPPAQHSAEEDNDDEGEIIE
FT                   EEAIFPEDQARLTHSSFRRTASMAVPRELSLSGRLYQSASHSLMEYSRPTMNIRSRVSY
FT                   YSSSPRPLPPRQAPSLMSLTHTASTPKFNRYSINSQSQRAVRNDSPPRLSMASNGMIPV
FT                   KTSSRSTTRGMETPRSQAPSRSRSLS"
XX
SQ   Sequence 2073 BP; 623 A; 495 C; 488 G; 466 T; 1 other;
     atggtcgcgg ttagcaatgt cacaatacaa cgacgacgca atcgtagagc cgcacgaagc        60
     gctccacgag ttcagctcat ggctattcca acgaccaccg gcgcaacaca gcgcagaaga       120
     agacaacgac gacgaaggag aaataataga ggaggaggca atatttccgg aggatcaggc       180
     aaggctcaca cattccagtt ttcgaaggac ggcatcaatg gcagttccaa gggaactatc       240
     actttcgggc cgtctttatc agagtgcaag ccactctctg atggaatact caaggcctac       300
     catgaatata agatcacgag tatcttatta cagttcatct ccgaggcctc ttccacctcg       360
     tcaggctcca tcgcttatga gcttgaccca cactgcaagt actccgaaat tcaatcgcta       420
     ctcaataaat tctcaatcac aaagagcggt tcgaaacgat tccccaccaa ggttatcaat       480
     ggcctcgaat ggcatgatac cagtgaagac cagttcaagg tccactacaa ggggaatgga       540
     gacgccaaga tcgcaggctc cttcaagatc acgatcgttg tcttaactca gaatcccaaa       600
     taggtagacg gagaaccggg gccgaaacca ggtccggacc ccacaccccc accagcacca       660
     ccacctgaac cgacgccagc caaacatgaa agattcattg tttacaccgg tacactgtca       720
     acactcatca gtgctcgaca gaactcagac agtatatcac tctactcaat tcgagaccag       780
     agggtcagat atattgaaga tgagaatgca aactggacgt acatcaaagc gcaatggtat       840
     tcacagaatt ctgtggaagc agtaccaatg tttatctacc cagttccaca aggtacttgg       900
     tcaattgaaa tctcatgtga aggttatcag gcgacgtcga gcaccacgga cccccaccgg       960
     gggaagtctg atggaatgat tgcttacgac gatgatcaaa ataaagtgtg gaatgttggt      1020
     gtgcaaaaca atgtaaccat ttccaataac aaagccgacg ctgactggaa atatggtcac      1080
     cctaatttaa caatcaacgg tgaacgtttt gaccagcagc aggtagtcga gaaagatgga      1140
     acagtttcgt ttcatttagt aactaccggg cccaacgcga gtttcttttt agtcggtcct      1200
     cccgttaaga agattgccaa gtacaactac tgtatatcat acggggcttg gacagaccgc      1260
     gacatggaat ttggaatggt ctctgttgtt ctcgatgaac atttggaggg tgttagaggt      1320
     tctcagtacg ttaggaaaac gctaagacca ggtcatatta gcgtcaatcg ttcccaccga      1380
     ttgcaagaaa tgcctcccac hcgagaggat ttcagtgagg aggatagtag tagtagtgat      1440
     agtaatacat ataaaacgga caattctccc ttgactgttc accttgtaaa agcaggtgac      1500
     gaggagaatt atacaacaga tcgatcggac gatgttgaac ccacactcca tgacgctgat      1560
     gtcatgaagt tctccgggtt tgttggagct aaagataggt ttgtgttgca gggcgctgat      1620
     ccaatcggcc ctggtgacag atctgtccgt cgcttcagac cgtctgccac attgaagtct      1680
     gcgttccatt cgggaccgac tcctgatgag ttgtacaacg ctggcgctga acaagcggat      1740
     cacgacttcg aacactttgt ctctcgaggc aaagagaagc tacaggatga agatccaatg      1800
     gccaaactcg aaagagaggc tgaagattta aaacctgata gtgacaacga agataacgat      1860
     tatgatcgaa ccgctcctgt gttcaaccca gcagatggtg acccctggtc tggcattaat      1920
     attaagccta gattaaaaga tcaggatatg aggtctacct taagcactgg caccttgaaa      1980
     ggtggttcac tgaaaccgaa gaaagaacca gccccaaggt ttgagccagc gccaaagtcc      2040
     gttttagata ggattagacg taggcaagtt taa                                   2073
//