ID FJ384784; SV 1; linear; genomic RNA; STD; VRL; 2388 BP. XX AC FJ384784; XX DT 18-JUN-2009 (Rel. 101, Created) DT 22-MAR-2010 (Rel. 104, Last updated, Version 2) XX DE Pepino mosaic virus isolate 4988 RNA-dependent RNA polymerase (RdRp) gene, DE partial cds; triple gene block protein 1 (TGBp1), triple gene block protein DE 2 (TGBp2), and triple gene block protein 3 (TGBp3) genes, complete cds; and DE coat protein (CP) gene, partial cds. XX KW . XX OS Pepino mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-2388 RX DOI; 10.1111/j.1439-0434.2009.01605.x. RX AGRICOLA; IND44338047. RA Alfaro-Fernandez A., Cordoba-Selles M.C., Herrera-Vasquez J.A., RA Cebrian M.C., Jorda C.; RT "Transmission of Pepino mosaic virus by the Fungal Vector Olpidium RT virulentus"; RL J. Phytopathol. 158(4):217-226(2010). XX RN [2] RP 1-2388 RA Alfaro-Fernandez A., Cordoba-Selles M.C., Herrera-Vasquez J.A., RA Cebrian M.C., Jorda C.; RT ; RL Submitted (14-OCT-2008) to the INSDC. RL Virologia vegetal, Instituto Agroforestal Mediterraneo, Cno. Vera, s/n, RL Valencia 46022, Spain XX DR MD5; ff5ca870b6a8bad86529d6aecd0a2286. XX FH Key Location/Qualifiers FH FT source 1..2388 FT /organism="Pepino mosaic virus" FT /host="Lycopersicon esculentum" FT /isolate="4988" FT /mol_type="genomic RNA" FT /country="Spain" FT /db_xref="taxon:112229" FT gene <1..461 FT /gene="RdRp" FT CDS <1..461 FT /codon_start=3 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:C5HA07" FT /db_xref="UniProtKB/TrEMBL:C5HA07" FT /protein_id="ACR82767.1" FT /translation="IAYTATRYHLDSTVKQVYAGDDMALDGVVQEKPSFKKLQNKLKLT FT SKTLFPKQVKGDYAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAIDMKH FT SYQMGDELHNYLTPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPKATH" FT gene 485..1191 FT /gene="TGBp1" FT CDS 487..1191 FT /codon_start=1 FT /gene="TGBp1" FT /product="triple gene block protein 1" FT /db_xref="GOA:Q3BLF3" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q3BLF3" FT /protein_id="ACR82769.1" FT /translation="MERSTLINLLQLHHFEPKLSVEGIIVVHGIAGTGKTTLLRTLFSA FT YPSLVIGSPRPCYLDKQNKISQVCLSCFPNTHCDIVDEYHLLESFLEPKLAIFGDPCQC FT TYIERLRVPHYTSFRTHRFGKSTAEILNKLFDLNIVSVKKEDDIVEFFNPFEVDPTEHI FT SASEEEVLDFVSDQVVTTSSEELAGLEFAETTFYCTTLAAAVAENPAKTFISLTRHTHK FT LTIGELNARSNS" FT gene 1172..1543 FT /gene="TGBp2" FT CDS 1172..1543 FT /codon_start=1 FT /gene="TGBp2" FT /product="triple gene block protein 2" FT /db_xref="GOA:Q8JJH7" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q8JJH7" FT /protein_id="ACR82770.1" FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSFSRTTHQH FT SCYNTHSATNNTQPLSGHH" FT gene 1394..1649 FT /gene="TGBp3" FT CDS 1395..1649 FT /codon_start=1 FT /gene="TGBp3" FT /product="triple gene block protein 3" FT /db_xref="GOA:Q8B083" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q8B083" FT /protein_id="ACR82771.1" FT /translation="MSSYLSSFSHWVLSSPINLVLALVVLLTSILAITHIQQPTIHNHC FT QVIIDGAAIVITNCENTPEVLKAINFSPWNGLSFPKFEN" FT gene 1688..>2388 FT /gene="CP" FT CDS 1688..>2388 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:C5HA11" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:C5HA11" FT /protein_id="ACR82768.1" FT /translation="MPDTTPVAATSSAPPTAKDAGAKAPSDFSNPNTAPSLSDLKKVKY FT VSTVTSVATPVEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN FT PALSRRALAAQFDRINITPRQFCMYFAKVVWNILLDSNIPPANWAKLGYQEDTKFAAFD FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM FT GGANTMYAIDAP" XX SQ Sequence 2388 BP; 719 A; 578 C; 439 G; 652 T; 0 other; caatagcata tactgctaca agataccatc ttgattctac agtcaagcag gtttatgctg 60 gagatgatat ggcattagat ggagttgtcc aagaaaaacc ctcttttaaa aaactacaga 120 acaagcttaa actcacctca aagacactat ttccaaaaca ggttaaaggt gattatgctg 180 aattctgtgg ttggactttc actcctggtg gtatcattaa aaaccctttg aaaatgcatg 240 cttccattat gttgcaagag gcaatcggca atttacacac tgctgccaga tcatatgcca 300 ttgacatgaa gcattcatac caaatgggtg atgagctgca caattactta acaccagatg 360 aagctgaaca acacttcctt gctgttcgga agttgcacaa gttacaccaa ggagaagcaa 420 tgagacttgg tgaaaagagc cctccaaaag caacacattg aggggttaag ttttccccag 480 ttcgaaatgg aaagatcaac tctgattaat ttacttcaat tgcaccactt cgagccaaaa 540 ctcagtgttg aaggaatcat agttgtgcac ggaattgcag gcactgggaa aaccacttta 600 cttaggactt tattttctgc ttaccctagc ttagttatag gttcacctag gccttgctat 660 ttagataaac aaaacaaaat ttcacaagtt tgcttatctt gctttcccaa tacccattgt 720 gatattgtcg atgagtatca tttgctagaa agttttctag aaccaaaatt ggctatcttt 780 ggtgacccct gtcaatgcac atacattgag agacttagag tcccacatta cacttccttc 840 agaactcata gatttggaaa gtcaactgct gagattttga acaaactgtt tgaccttaat 900 atagtctcag ttaagaaaga agacgacatc gttgaattct ttaacccttt tgaagttgac 960 cccactgagc atatctctgc ctctgaagaa gaagtcttgg actttgtttc tgaccaagtg 1020 gtgaccacca gctcagagga actagcagga cttgagtttg cagaaacaac tttctactgc 1080 acaacattgg ccgcagctgt tgctgaaaat cctgctaaga ctttcatctc tctgactaga 1140 cacacccaca aactcaccat tggggaacta aatgccaggt ctaactccta gagctgacct 1200 cactgacaca tacaaaatca ttgccattgc tttcttgttg tcagcttgca tttacttcca 1260 aaatagccac taccaacctg ttgctggaga caacttgcac cgtttgcctt ttggtggcca 1320 atatcaagac ggcaccaaaa agatatctta ttttccacaa cagcagtcat actttcattc 1380 tggaaacaaa ttaaatgtcc tcatacttat cttcattctc acattgggta ttgtcctcac 1440 caataaattt agttttagct ttagtcgtac tactcaccag cattcttgct ataacacaca 1500 ttcagcaacc aacaatacac aaccattgtc aggtcatcat tgacggtgct gcaatagtca 1560 taacaaattg tgagaacaca ccagaagtgc ttaaagcaat caacttctcc ccttggaacg 1620 ggttaagttt tcctaaattt gaaaattaat attgagtgtt cacaaaaatc aacttcaatt 1680 aacaatcatg cctgacacaa cacctgttgc tgccacttca agtgcaccac ccacagccaa 1740 agatgctggt gccaaagctc cttctgactt ctcaaatccc aatacagctc ctagtctcag 1800 tgatttgaag aaagtcaagt atgtctccac cgtgacctcc gtggccacac cagttgaaat 1860 tgaagcccta ggcaaaatct tcaccgctat gggccttgcc gccaatgaga ctggtccggc 1920 catgtgggat ctagctcgtg catatgctga tgtgcagagt tctaaatcgg cacagctgat 1980 tggagctacc ccttccaacc ctgcactatc acgccgagcc cttgctgctc agtttgatcg 2040 aatcaatata acccccaggc aattttgcat gtactttgcc aaagttgttt ggaacatact 2100 tctcgacagc aacattccac cagcaaattg ggccaaactt ggttaccaag aagatacaaa 2160 atttgctgca tttgacttct tcgatggagt caccaaccct gccagcctgc agcctgctga 2220 tggtcttatc aggcagccaa atgagaaaga actagctgct cactccgtag ctaagtacgg 2280 cgccttggct aggcaaaaga tctccacagg taattatatt accacacttg gagaagtcac 2340 acgtggacac atgggaggag ctaacaccat gtacgcgata gacgcacc 2388 //