ID FJ373318; SV 1; linear; genomic RNA; STD; VRL; 2886 BP. XX AC FJ373318; XX DT 09-SEP-2009 (Rel. 102, Created) DT 09-SEP-2009 (Rel. 102, Last updated, Version 1) XX DE Phytophthora infestans RNA virus 1 segment RNA2B, complete sequence. XX KW . XX OS Phytophthora infestans RNA virus 1 OC Viruses; Riboviria; unclassified Riboviria; unclassified ssRNA viruses; OC unclassified ssRNA positive-strand viruses. XX RN [1] RP 1-2886 RX DOI; 10.1016/j.virol.2009.06.040. RX PUBMED; 19632701. RA Cai G., Myers K., Hillman B.I., Fry W.E.; RT "A novel virus of the late blight pathogen, Phytophthora infestans, with RT two RNA segments and a supergroup 1 RNA-dependent RNA polymerase"; RL Virology 392(1):52-61(2009). XX RN [2] RP 1-2886 RA Cai G., Myers K., Hillman B.I., Fry W.E.; RT ; RL Submitted (08-OCT-2008) to the INSDC. RL Plant Pathology and Plant-Microbe Biology, Cornell University, 334 Plant RL Science, Ithaca, NY 14853, USA XX DR MD5; b83ff674d7a333314facd27788e5db63. XX CC GenBank Accession Numbers FJ373316-FJ373318 represent the complete CC genome of Phytophthora infestans RNA virus 1. Segments 2A and 2B CC are likely different versions of the same segment. XX FH Key Location/Qualifiers FH FT source 1..2886 FT /organism="Phytophthora infestans RNA virus 1" FT /segment="RNA2B" FT /host="Phytophthora infestans" FT /mol_type="genomic RNA" FT /country="Mexico" FT /note="virus isolated in 2006 from Phytophthora infestans FT originally collected in 1998; segments 2A and 2B are very FT closely related and are likely different versions of the FT same segment" FT /db_xref="taxon:640897" FT gene 57..794 FT /gene="ORF2B-1" FT CDS 57..794 FT /codon_start=1 FT /gene="ORF2B-1" FT /product="unknown" FT /db_xref="UniProtKB/TrEMBL:C7SHT8" FT /protein_id="ACQ91605.1" FT /translation="MRQLVCCVLLCLALVQLSSSVNYYGVGSGVSGLFAGSSCRYACSA FT VGFLIASTAGRGVSVGARGGVFPALSGYLFLQMAGGVEALGGVPSAIERGSWNANGDWS FT PGSTAGRKFSDQPKLDGTKEFGGFCERHSLRCYTVSHRFFASQACAEIYSTTDRYGFSP FT VTHRDYCRNDCYFNRFLVCDQFNGAGYFRNGSLAGKLFGVFRNATKSAGARSTRLVNSV FT KLKCCLMKRRSKGSGNLFSHWSL" FT sig_peptide 57..116 FT /gene="ORF2B-1" FT /inference="profile:SignalP3.0:" FT gene 127..714 FT /gene="ORF3B" FT CDS 127..714 FT /codon_start=1 FT /gene="ORF3B" FT /product="unknown" FT /db_xref="GOA:C7SHT9" FT /db_xref="UniProtKB/TrEMBL:C7SHT9" FT /protein_id="ACQ91607.1" FT /translation="MVSEVVLVDYSRDRHAVTRAAQWVFSLPARLDGVCPWVREEECSL FT LCQVICFFRWLAEWKRWVACLLPSNEVRGMRTEIGVQEAQLGVNSPINRSWMELRSLAV FT FVSVIVCGVILSVIGFLRHRRALRSTRLLTVMGLAQLLIVTIAGMTVTLTDFLCVISLM FT ELVTLEMAVLLESFLEFFEMRRNRLVHGLRDW" FT misc_feature 427..486 FT /gene="ORF3B" FT /note="transmembrane region" FT misc_feature 520..588 FT /gene="ORF3B" FT /note="transmembrane region" FT misc_feature 601..669 FT /gene="ORF3B" FT /note="transmembrane region" FT gene 815..2590 FT /gene="ORF2B-2" FT CDS 815..2590 FT /codon_start=1 FT /gene="ORF2B-2" FT /product="unknown" FT /db_xref="GOA:C7SHU0" FT /db_xref="UniProtKB/TrEMBL:C7SHU0" FT /protein_id="ACQ91606.1" FT /translation="MLKFANVAPVKILLITTLFVLITLGCDLEAVLTICAVVMMLFTML FT APARNEFLNSLSVTIATVILFVSIAFFVDNQIVVIGFGFLLCGGLVFELFKYARSTRAA FT DSTFVLFFVCLAIYLIDYVKIINETKGVSNALLDCLHGVGAIMVPYGRTKSVLLNDLIL FT GVDLYRWILRFHEFPKIIAVGFGFVAFGFFLAIRAVVAWNSVPNLRTKYDLGNVMTGLY FT VYCIDVFQWTWLFYYIIGSESWNYKRGFYSLFNAILIVAEFNYALDFLVVRFMLWVGEK FT VFFQTGYLKMTRLLNAGCEIELDRKIFPVKGAFPWLDVSNLLNIVDNVKGITSFANGVT FT RAGQCLVRRDERGMTNILTVDHVVGLSKDVSVGGVGVGLFETRSYKGVDPVIALNANVD FT GGTDVPILSKNETSSVKHLIVIHSDKRLCFIDRFKFGRVGEIEAVVNLRAGDSGGPIIG FT VLSNGEFRYVGAVSRGSFDDGSANFISSVLHEGGSYSPGSEGRFMDRFGNKMAEWEISS FT KVTELLGEHAADFELYERKEMSRDSFKRAKGKSRAALDALISVGGFSDKETSEIRGAFE FT EGQIVRFNMARKAAE" FT sig_peptide 815..889 FT /gene="ORF2B-2" FT /inference="profile:SignalP3.0:" FT misc_feature 890..952 FT /gene="ORF2B-2" FT /note="transmembrane region" FT misc_feature 980..1033 FT /gene="ORF2B-2" FT /note="transmembrane region" FT misc_feature 1046..1105 FT /gene="ORF2B-2" FT /note="transmembrane region" FT misc_feature 1133..1192 FT /gene="ORF2B-2" FT /note="transmembrane region" FT misc_feature 1277..2272 FT /gene="ORF2B-2" FT /note="SUPERFAMILY SSF50494; Region: trypsin-like serine FT protease" FT misc_feature 1352..1420 FT /gene="ORF2B-2" FT /note="transmembrane region" FT misc_feature 1463..1531 FT /gene="ORF2B-2" FT /note="transmembrane region" FT misc_feature 1568..1636 FT /gene="ORF2B-2" FT /note="transmembrane region" XX SQ Sequence 2886 BP; 732 A; 484 C; 775 G; 895 T; 0 other; gagttttgtg ttttaagtcc taacggagag gacacaagac atcctgtgtg cagcgaatga 60 gacaattagt ttgctgtgtg ctcctttgct tggcgttggt tcaactatcg tcttccgtga 120 actattatgg tgtcggaagt ggtgttagtg gactattcgc gggatcgtca tgccgttacg 180 cgtgcagcgc agtgggtttt ctcattgcca gcacggctgg acggggtgtg tccgtgggtg 240 cgagaggagg agtgttccct gctttgtcag gttatctgtt tcttcagatg gctggcggag 300 tggaagcgtt gggtggcgtg ccttctgcca tcgaacgagg ttcgtggaat gcgaacggag 360 attggagtcc aggaagcaca gctgggcgta aattctccga tcaaccgaag ttggatggaa 420 ctaaggagtt tggcggtttt tgtgagcgtc atagtttgcg gtgttatact gtcagtcata 480 ggttttttgc gtcacaggcg tgcgctgaga tctactcgac tactgaccgt tatgggttta 540 gcccagttac tcatcgtgac tattgcagga atgactgtta ctttaacaga tttcttgtgt 600 gtgatcagtt taatggagct ggttacttta gaaatggcag tcttgctgga aagctttttg 660 gagtttttcg aaatgcgacg aaatcggctg gtgcacggtc tacgagactg gtgaattcgg 720 tgaaattgaa gtgttgcctg atgaaaagga gatcgaaagg gtctgggaac ttgttttccc 780 attggtccct ttaggtcttg ttggaatcat tgcaatgttg aagttcgcca acgttgcacc 840 ggttaagatc cttctgatta cgaccctgtt cgtattgatt acgttgggtt gtgatttgga 900 ggcggtactt acgatttgtg cggtagtaat gatgctattc acaatgcttg ctcctgctcg 960 caacgagttt ctaaattcgc tgtcagtcac gatagcgact gtgatactct ttgtgtccat 1020 tgccttcttt gtcgataacc agattgtggt gattggtttc ggtttcttat tgtgtggtgg 1080 tcttgtcttt gagttgttta aatacgctcg aagtacgcgc gcagcggatt caacattcgt 1140 gttgttcttc gtttgccttg ccatttatct cattgactat gttaaaatta tcaatgagac 1200 gaaaggcgtg agcaatgcgt tgcttgattg tctgcatggt gtaggtgcca ttatggtgcc 1260 ttacggaaga acgaagtctg tgttacttaa cgaccttatt ttaggcgttg acctttacag 1320 atggattctc cgttttcatg agtttccgaa aatcatagcc gtggggtttg gtttcgtggc 1380 atttggtttc ttcttggcga ttcgtgctgt tgtggcatgg aattccgttc cgaatttgcg 1440 tactaagtat gatcttggta acgtaatgac gggactttac gtttattgca ttgatgtatt 1500 tcaatggact tggctgttct actatatcat cggtagtgaa agttggaact acaaacgtgg 1560 tttctacagt ctcttcaacg cgattttgat cgttgcggag ttcaattacg cccttgattt 1620 tctagtggta agattcatgc tgtgggttgg tgagaaagtt ttctttcaaa ctggttacct 1680 caagatgacc agactgctta atgcaggatg tgaaattgag ttggatcgca agatctttcc 1740 agttaaagga gccttcccat ggcttgacgt cagcaacttg ttgaacattg ttgataatgt 1800 gaagggtatt acttcatttg ccaatggtgt cacaagggct ggtcagtgtc tggtccgtcg 1860 tgatgaacgt ggaatgacta acatcctgac tgtggatcat gtcgttgggt tatccaaaga 1920 cgtgtccgta ggtggtgttg gtgtcggttt gtttgagacg cgtagttaca agggtgttga 1980 ccctgtgatt gcgttgaatg ctaatgttga tggtggcact gatgtgccga ttctctcaaa 2040 gaatgaaacg agttcagtga aacatctgat cgtgattcat tcagacaaaa ggttgtgttt 2100 tatcgatagg ttcaaatttg gacgtgttgg tgaaattgaa gccgttgtca acttgcgcgc 2160 tggtgattcg ggtggtccga tcataggcgt gcttagtaac ggagagttta ggtatgttgg 2220 tgccgtgtcg cgcggaagtt ttgatgatgg ctcagccaat ttcatttctt ccgtgctaca 2280 tgagggtggt tcatattctc ccggttcgga gggacgattt atggacaggt ttggtaacaa 2340 gatggctgaa tgggaaatca gctctaaagt taccgaactg ctgggtgaac atgctgccga 2400 tttcgaatta tacgaacgca aggagatgtc gcgtgatagc ttcaaacgag ctaaaggcaa 2460 atctcgtgca gcgcttgatg cgctaatttc ggtcggtggg ttttctgaca aagagacttc 2520 ggagatacgc ggtgcgttcg aagagggtca aattgttcgt ttcaatatgg cgcgtaaagc 2580 ggcagaatga gacgcccagg ttgtatgttg catttataaa agttaaatag gaataaaaat 2640 tagttagatg tcgcgtgctt ttctttccct gaaaaggagg gttgccataa taatggtggg 2700 aaaagtttta tattgcatgt gttgcgcatc ttactgatga atgataaatt ctgacgttga 2760 tgggtgaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 2820 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 2880 aaaaaa 2886 //