ID FJ373317; SV 1; linear; genomic RNA; STD; VRL; 2896 BP. XX AC FJ373317; XX DT 09-SEP-2009 (Rel. 102, Created) DT 09-SEP-2009 (Rel. 102, Last updated, Version 1) XX DE Phytophthora infestans RNA virus 1 segment RNA2A, complete sequence. XX KW . XX OS Phytophthora infestans RNA virus 1 OC Viruses; Riboviria; unclassified Riboviria; unclassified ssRNA viruses; OC unclassified ssRNA positive-strand viruses. XX RN [1] RP 1-2896 RX DOI; 10.1016/j.virol.2009.06.040. RX PUBMED; 19632701. RA Cai G., Myers K., Hillman B.I., Fry W.E.; RT "A novel virus of the late blight pathogen, Phytophthora infestans, with RT two RNA segments and a supergroup 1 RNA-dependent RNA polymerase"; RL Virology 392(1):52-61(2009). XX RN [2] RP 1-2896 RA Cai G., Myers K., Hillman B.I., Fry W.E.; RT ; RL Submitted (08-OCT-2008) to the INSDC. RL Plant Pathology and Plant-Microbe Biology, Cornell University, 334 Plant RL Science, Ithaca, NY 14853, USA XX DR MD5; ffafa663ec5fd6668c5a23665d075420. XX CC GenBank Accession Numbers FJ373316-FJ373318 represent the complete CC genome of Phytophthora infestans RNA virus 1. Segments 2A and 2B CC are likely different versions of the same segment. XX FH Key Location/Qualifiers FH FT source 1..2896 FT /organism="Phytophthora infestans RNA virus 1" FT /segment="RNA2A" FT /host="Phytophthora infestans" FT /mol_type="genomic RNA" FT /country="Mexico" FT /note="virus isolated in 2006 from Phytophthora infestans FT originally collected in 1998; segments 2A and 2B are very FT closely related and are likely different versions of the FT same segment" FT /db_xref="taxon:640897" FT gene 57..2600 FT /gene="ORF2A" FT CDS 57..2600 FT /codon_start=1 FT /gene="ORF2A" FT /product="unknown" FT /db_xref="GOA:C7SHT6" FT /db_xref="UniProtKB/TrEMBL:C7SHT6" FT /protein_id="ACQ91603.1" FT /translation="MRQLVCCVLLCLALVQLSSSVNYYGVGSGVSGLFAGSSCRYACSA FT VGFLIASTAGRGVSVGARGGVFPALSGYLFLQMAGGVEALGGVPSAIERGSWNANGDWS FT PGSTAGRKFSDQPKLDGTKEFGGFCERHSLRCYTVSHRFFASQACAEIYSTTDRYGFSP FT VTHRDYCRNDCYFNRFLVCDQFNGAGYFRNGSLAGKLFGVFRNATKSAGARLDKLIETG FT EFGEIEVLPDEKEIERVWELVFPLVPLGLVGIIAMLKFANVAPVKILLITTLFVLITLG FT CDLEAVLTICAVVMMLFTMLAPARNEFLNSLSVTIATVILFVSIAFFVDNQIVVIGFGF FT LLCGGLVFELFKYARSTRAADSTFVLFFVCLAIYLIDYVKIINETKGVSNALLDCLHGV FT GAIMVPYGRTKSVLLNDLILGVDLYRWILRFHEFPKIIAVGFGFVAFGFFLAIRAVVAW FT NSVPNLRTKYDLGNVMTGLYVYCIDVFQWTWLFYYIIGSESWNYKRGFYSLFNAILIVA FT EFNYALDFLVVRFMLWVGEKVFFQTGYLKMTRLLNAGCEIELDRKIFPVKGAFPWLDVS FT NLLNIVDNVKGITSFANGVTRAGQCLVRRDERGMTNILTVDHVVGLSKDVSVGGVGVGL FT FETRSYKGVDPVIALNANVDGGTDVPILSKNETSSVKHLIVIHSDKRLCFIDRFKFGRV FT GEIEAVVNLRAGDSGGPIIGVLSNGEFRYVGAVSRGSFDDGSANFISSVLHEGGSYSPG FT SEGRFMDRFGNKMAEWEISSKVTELLGEHAADFELYERKEMSRDSFKRAKGKSRAALDA FT LISVGGFSDKETSEIRGAFEEGQIVRFNMARKAAE" FT sig_peptide 57..116 FT /gene="ORF2A" FT /inference="profile:SignalP3.0:" FT gene 127..711 FT /gene="ORF3A" FT CDS 127..711 FT /codon_start=1 FT /gene="ORF3A" FT /product="unknown" FT /db_xref="GOA:C7SHT7" FT /db_xref="UniProtKB/TrEMBL:C7SHT7" FT /protein_id="ACQ91604.1" FT /translation="MVSEVVLVDYSRDRHAVTRAAQWVFSLPARLDGVCPWVREEECSL FT LCQVICFFRWLAEWKRWVACLLPSNEVRGMRTEIGVQEAQLGVNSPINRSWMELRSLAV FT FVSVIVCGVILSVIGFLRHRRALRSTRLLTVMGLAQLLIVTIAGMTVTLTDFLCVISLM FT ELVTLEMAVLLESFLEFFEMRRNRLVPVSIS" FT misc_feature 421..489 FT /gene="ORF3A" FT /note="transmembrane region" FT misc_feature 547..615 FT /gene="ORF3A" FT /note="transmembrane region" FT misc_feature 771..839 FT /gene="ORF2A" FT /note="transmembrane region" FT misc_feature 876..944 FT /gene="ORF2A" FT /note="transmembrane region" FT misc_feature 987..1040 FT /gene="ORF2A" FT /note="transmembrane region" FT misc_feature 1053..1106 FT /gene="ORF2A" FT /note="transmembrane region" FT misc_feature 1134..1202 FT /gene="ORF2A" FT /note="transmembrane region" FT misc_feature 1284..2279 FT /gene="ORF2A" FT /note="SUPERFAMILY SSF50494; Region: trypsin-like serine FT protease" FT misc_feature 1362..1430 FT /gene="ORF2A" FT /note="transmembrane region" FT misc_feature 1473..1541 FT /gene="ORF2A" FT /note="transmembrane region" FT misc_feature 1578..1646 FT /gene="ORF2A" FT /note="transmembrane region" XX SQ Sequence 2896 BP; 734 A; 485 C; 777 G; 900 T; 0 other; gagttttgtg ttttaagtcc taacggagag gacacaagac atcctgtgtg cagcgaatga 60 gacaattagt ttgctgtgtg ctcctttgct tggcgttggt tcaactatcg tcttccgtga 120 actattatgg tgtcggaagt ggtgttagtg gactattcgc gggatcgtca tgccgttacg 180 cgtgcagcgc agtgggtttt ctcattgcca gcacggctgg acggggtgtg tccgtgggtg 240 cgagaggagg agtgttccct gctttgtcag gttatctgtt tcttcagatg gctggcggag 300 tggaagcgtt gggtggcgtg ccttctgcca tcgaacgagg ttcgtggaat gcgaacggag 360 attggagtcc aggaagcaca gctgggcgta aattctccga tcaaccgaag ttggatggaa 420 ctaaggagtt tggcggtttt tgtgagcgtc atagtttgcg gtgttatact gtcagtcata 480 ggttttttgc gtcacaggcg tgcgctgaga tctactcgac tactgaccgt tatgggttta 540 gcccagttac tcatcgtgac tattgcagga atgactgtta ctttaacaga tttcttgtgt 600 gtgatcagtt taatggagct ggttacttta gaaatggcag tcttgctgga aagctttttg 660 gagtttttcg aaatgcgacg aaatcggctg gtgcccgtct cgataagttg attgagactg 720 gtgaattcgg tgaaattgaa gtgttgcctg atgaaaagga gatcgaaagg gtctgggaac 780 ttgttttccc attggtccct ttaggtcttg ttggaatcat tgcaatgttg aagttcgcca 840 acgttgcacc ggttaagatc cttctgatta cgaccctgtt cgtattgatt acgttgggtt 900 gtgatttgga ggcggtactt acgatttgtg cggtagtaat gatgctattc acaatgcttg 960 ctcctgctcg caacgagttt ctaaattcgc tgtcagtcac gatagcgact gtgatactct 1020 ttgtgtccat tgccttcttt gtcgataacc agattgtggt gattggtttc ggtttcttat 1080 tgtgtggtgg tcttgtcttt gagttgttta aatacgctcg aagtacgcgc gcagcggatt 1140 caacattcgt gttgttcttc gtttgccttg ccatttatct cattgactat gttaaaatta 1200 tcaatgagac gaaaggcgtg agcaatgcgt tgcttgattg tctgcatggt gtaggtgcca 1260 ttatggtgcc ttacggaaga acgaagtctg tgttacttaa cgaccttatt ttaggcgttg 1320 acctttacag atggattctc cgttttcatg agtttccgaa aatcatagcc gtggggtttg 1380 gtttcgtggc atttggtttc ttcttggcga ttcgtgctgt tgtggcatgg aattccgttc 1440 cgaatttgcg tactaagtat gatcttggta acgtaatgac gggactttac gtttattgca 1500 ttgatgtatt tcaatggact tggctgttct actatatcat cggtagtgaa agttggaact 1560 acaaacgtgg tttctacagt ctcttcaacg cgattttgat cgttgcggag ttcaattacg 1620 cccttgattt tctagtggta agattcatgc tgtgggttgg tgagaaagtt ttctttcaaa 1680 ctggttacct caagatgacc agactgctta atgcaggatg tgaaattgag ttggatcgca 1740 agatctttcc agttaaagga gccttcccat ggcttgacgt cagcaacttg ttgaacattg 1800 ttgataatgt gaagggtatt acttcatttg ccaatggtgt cacaagggct ggtcagtgtc 1860 tggtccgtcg tgatgaacgt ggaatgacta acatcctgac tgtggatcat gtcgttgggt 1920 tatccaaaga cgtgtccgta ggtggtgttg gtgtcggttt gtttgagacg cgtagttaca 1980 agggtgttga ccctgtgatt gcgttgaatg ctaatgttga tggtggcact gatgtgccga 2040 ttctctcaaa gaatgaaacg agttcagtga aacatctgat cgtgattcat tcagacaaaa 2100 ggttgtgttt tatcgatagg ttcaaatttg gacgtgttgg tgaaattgaa gccgttgtca 2160 acttgcgcgc tggtgattcg ggtggtccga tcataggcgt gcttagtaac ggagagttta 2220 ggtatgttgg tgccgtgtcg cgcggaagtt ttgatgatgg ctcagccaat ttcatttctt 2280 ccgtgctaca tgagggtggt tcatattctc ccggttcgga gggacgattt atggacaggt 2340 ttggtaacaa gatggctgaa tgggaaatca gctctaaagt taccgaactg ctgggtgaac 2400 atgctgccga tttcgaatta tacgaacgca aggagatgtc gcgtgatagc ttcaaacgag 2460 ctaaaggcaa atctcgtgca gcgcttgatg cgctaatttc ggtcggtggg ttttctgaca 2520 aagagacttc ggagatacgc ggtgcgttcg aagagggtca aattgttcgt ttcaatatgg 2580 cgcgtaaagc ggcagaatga gacgcccagg ttgtatgttg catttataaa agttaaatag 2640 gaataaaaat tagttagatg tcgcgtgctt ttctttccct gaaaaggagg gttgccataa 2700 taatggtggg aaaagtttta tattgcatgt gttgcgcatc ttactgatga atgataaatt 2760 ctgacgttga tgggtgaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 2820 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 2880 aaaaaaaaaa aaaaaa 2896 //