ID FJ373316; SV 1; linear; genomic RNA; STD; VRL; 3220 BP. XX AC FJ373316; XX DT 09-SEP-2009 (Rel. 102, Created) DT 09-SEP-2009 (Rel. 102, Last updated, Version 1) XX DE Phytophthora infestans RNA virus 1 segment RNA1, complete sequence. XX KW . XX OS Phytophthora infestans RNA virus 1 OC Viruses; Riboviria; unclassified Riboviria; unclassified ssRNA viruses; OC unclassified ssRNA positive-strand viruses. XX RN [1] RP 1-3220 RX DOI; 10.1016/j.virol.2009.06.040. RX PUBMED; 19632701. RA Cai G., Myers K., Hillman B.I., Fry W.E.; RT "A novel virus of the late blight pathogen, Phytophthora infestans, with RT two RNA segments and a supergroup 1 RNA-dependent RNA polymerase"; RL Virology 392(1):52-61(2009). XX RN [2] RP 1-3220 RA Cai G., Myers K., Hillman B.I., Fry W.E.; RT ; RL Submitted (08-OCT-2008) to the INSDC. RL Plant Pathology and Plant-Microbe Biology, Cornell University, 334 Plant RL Science, Ithaca, NY 14853, USA XX DR MD5; d4fbe410503f38c2c9a6aab2df692874. XX CC GenBank Accession Numbers FJ373316-FJ373318 represent the complete CC genome of Phytophthora infestans RNA virus 1. Segments 2A and 2B CC are likely different versions of the same segment. CC Name: Phytophthora infestans RNA virus 1. XX FH Key Location/Qualifiers FH FT source 1..3220 FT /organism="Phytophthora infestans RNA virus 1" FT /segment="RNA1" FT /host="Phytophthora infestans" FT /mol_type="genomic RNA" FT /country="Mexico" FT /note="virus isolated in 2006 from Phytophthora infestans FT originally collected in 1998" FT /db_xref="taxon:640897" FT 5'UTR 1..68 FT gene 69..3002 FT /gene="ORF1" FT CDS 69..3002 FT /codon_start=1 FT /gene="ORF1" FT /product="unknown" FT /db_xref="GOA:C7SHT5" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:C7SHT5" FT /protein_id="ACQ91602.1" FT /translation="MQINVGGRELCAIFVGLICWMFICEFIVNEYEQFYGTEYTVETSP FT MCALFEGCSLNVESFLKNEDVRSIMITALFVGKMLEMLDITVKFEFSSAEEGESVFADF FT NRDLRDVRRSVELKASSMKKIIADFRTKIRSIVYLGVSNIDIPNVHAMRYPIDFFMSRL FT YRMKFLKEYEESREKYRRVNPTLAMKLAQLLRYDNEFLLESNVAEALKESVEEVLEEVF FT SNPSFEEVKIELNGRLNSGMAMFDDINVNGSSAAGYPYPAGVKRRDVLEEAKASAYDLY FT NDSDLFEGYMSDHRWYTTGRAKLVKMGKPDKARLVLYSGFSYSLLGFVYSQVWTGFMNR FT QCRGWSAVGMSWMNGGAAKVASFFEDCFGIAVSGFEYMTLDVAEWDSSVCRELLHACKR FT FHMRVLERTLSPENARYKEYFGRIYDEMIEAKVVLPGGHSFRLHHGMKSGWIMTANDNT FT LMHEFVVRTLQKIGQIPDMKRQLYGDDNLSRKPIGMSKQLLVDGYGMFGFRLSHIHVSR FT RLSEVDFLSKFIIFKDGFYFPWREQTETHARLLMPEEFDPNYRIVPDSRVAAEHLLGHL FT LDNPFNANVRHVCFTLLEYIKSNYGVRTINVEEFINTRWSFMLRDIKRLCGEIPTVPSV FT EFIQELYGVFSEPVSFNWAGVGEYARKLPKFSFISKAPSAEPFFRSQKAAFELSVSEKF FT GHRKTSALNRACGYKKMPLHIFGQAGGKLIEIINTCGLKCESVLDLGTHPGAAMATLQS FT MHKVKSATCVSLFPEIDKSKGFCPRVLRGKDFEFFEMSAEKFKPTKHYDMCFDDIYDFE FT EADRFKRAEQMFGHVDRHFAGALTRAEKFKPFCGSYVMKVRGFTPLVLKGLYDLYRMWG FT YLDIRKTFYSNPWNPEFYVVLVKRHDQYVRRSTFNGAVNAYLNGIAPRLSFFVNARAFN FT YDRMSLGRETLNNPLRDDETVQRAFDAYAETLRAQSFNDDYPTEVMF" FT sig_peptide 69..146 FT /gene="ORF1" FT /note="signal anchor" FT /inference="profile:SignalP3.0:" FT misc_feature 504..1889 FT /gene="ORF1" FT /note="Pfam00680; Region: RdRP_1" FT misc_feature 945..1715 FT /gene="ORF1" FT /note="CDD cd01699; Region: RNA-dependent RNA polymerase" FT misc_feature 1011..1079 FT /gene="ORF1" FT /note="transmembrane region" FT misc_feature 1191..1562 FT /gene="ORF1" FT /note="Prosite PS50507; Region: RdRp of positive ssRNA FT viruses catalytic domain" FT 3'UTR 3003..3160 XX SQ Sequence 3220 BP; 852 A; 598 C; 825 G; 945 T; 0 other; gagttttgtt ttctaaccct ataccggagg agaactaaac atcagtgtgc accttgcaga 60 gtgccgcgat gcagataaac gtcggagggc gtgaactctg cgccatattc gttgggctca 120 tctgctggat gttcatctgt gagttcattg tcaatgaata cgaacaattc tatggcactg 180 aatacacagt tgaaacgtcc ccaatgtgtg cgctgtttga aggatgcagt ttgaatgtgg 240 aatctttttt gaaaaatgaa gatgtccgct ctatcatgat cactgctctc ttcgtcggaa 300 agatgctcga aatgttagac attacagtca agttcgagtt ttcttcggct gaagagggtg 360 aaagtgtttt tgcagacttc aatcgtgatt tgcgggatgt gcgaaggtcc gtcgagctta 420 aggctagcag tatgaagaaa attattgcgg actttcgtac taaaatcagg tcaattgtgt 480 acttgggagt gtcaaacatt gatattccca acgtccatgc tatgaggtat cctatcgact 540 ttttcatgtc gcggttgtac cgtatgaagt ttttgaaaga atatgaggag tcgagggaga 600 agtataggcg tgtgaatcct actctggcga tgaagttggc gcaattgcta cgttatgata 660 acgagtttct gctcgaatcg aatgtggctg aagcgttaaa agagtcagtg gaggaagtgc 720 ttgaagaagt gttttcgaac ccttcgtttg aagaggttaa aattgagcta aatggaaggc 780 tcaattccgg gatggcgatg tttgacgaca tcaacgttaa cggttcctcg gccgctggat 840 atccttatcc ggctggcgtt aaacggaggg atgtgttgga ggaagctaaa gcttccgctt 900 atgatttgta caacgacagt gaccttttcg aaggttacat gtccgaccat aggtggtaca 960 ccaccggccg tgcaaagcta gtcaagatgg gtaaaccgga taaagcgcgt ttagtgctgt 1020 attccggttt ttcttactct ttacttggtt ttgtgtactc tcaggtgtgg actggtttta 1080 tgaaccgtca atgcagaggg tggtctgcgg ttggaatgtc gtggatgaat ggcggagcgg 1140 ctaaagtagc ctctttcttc gaagattgtt ttggaattgc tgttagtggt ttcgaataca 1200 tgacacttga tgtggcagaa tgggattcct cagtctgtcg tgagcttttg catgcttgta 1260 agagattcca tatgcgtgtg cttgaaagga ctttgagtcc tgagaatgca cgctataagg 1320 agtattttgg gaggatttat gatgagatga tcgaagctaa ggtcgtcctg cccggtgggc 1380 attcctttcg attacatcat ggcatgaaga gcggttggat catgaccgct aatgataaca 1440 cattgatgca tgaatttgtc gtgcgtacgt tgcagaagat cggtcaaatc ccggatatga 1500 aacgccagtt atatggcgat gacaatctga gcaggaaacc gattgggatg tcaaaacagt 1560 tgcttgttga tggttacgga atgtttggtt ttcggttgag ccacattcat gtgtcacgtc 1620 gtctctccga agttgatttt ctttcgaagt ttatcatctt caaggacggt ttctactttc 1680 cttggaggga acagactgag acacatgcca ggctactcat gcctgaagag ttcgacccga 1740 attaccgaat cgttcctgat tcacgtgtag ctgcggagca tttgcttggg catttgcttg 1800 ataatccttt taatgctaac gtgcgacatg tctgttttac gttgcttgag tacatcaaga 1860 gtaactatgg tgtgaggact attaacgtcg aggaattcat caacaccaga tggtctttca 1920 tgttgcgaga cattaaaaga ctatgcggtg aaattccgac tgtcccgagt gttgaattca 1980 ttcaggagct ctatggtgta ttttccgaac cggtttcatt taattgggcc ggtgttggtg 2040 aatacgccag aaagcttcct aagttttctt tcatctcgaa agcaccaagt gctgaacctt 2100 tcttcagatc gcagaaagca gcttttgagc tgtcagtctc tgagaagttc ggccatagga 2160 agacaagcgc gttgaacaga gcttgcgggt ataagaagat gcctctccat atttttggtc 2220 aggctggtgg aaaattgata gaaatcatca atacctgtgg gttgaagtgc gaaagtgtgt 2280 tagatttagg cacacatcct ggtgctgcga tggcgacatt gcagtcgatg cataaggtta 2340 agagcgcgac ctgtgtgtca ttattcccgg aaatcgacaa gagcaagggg ttttgtcctc 2400 gtgtgttgcg agggaaagat ttcgagttct tcgaaatgtc ggctgagaag tttaagccaa 2460 cgaagcatta tgatatgtgt ttcgatgaca tctatgactt tgaagaagct gaccggttta 2520 agcgtgctga acagatgttc ggccacgtcg acagacactt cgcaggggcg ttaactcgtg 2580 ccgagaagtt taaacccttt tgtggctctt atgtcatgaa agttcgagga ttcactcccc 2640 tcgtcttaaa gggtctttat gacttatacc gtatgtgggg ttatctcgat atacgtaaga 2700 ccttttattc gaacccatgg aatccagagt tctatgtagt tcttgtcaag cgccacgatc 2760 agtacgttcg gaggtcaacc tttaatggtg cagtgaatgc gtaccttaac ggaatcgcac 2820 cacggctttc attctttgtg aatgcaaggg ctttcaacta cgatcgtatg agtctaggaa 2880 gggagactct caataatccc ctccgcgatg atgaaacagt tcagcgcgca tttgatgcat 2940 atgctgagac acttcgggct caatcgttta acgacgatta cccgactgaa gtcatgtttt 3000 gattcgccat ttgtgttgca tattctttat attaaaatta aaaattagct aggtgtggcg 3060 tacttctctt tccctgataa ggagggttgc tgttttaaca gtgagagaag tttcattgcg 3120 cgttggcaaa ggaatggtaa attctagagc tgacaggtgg aaaaaaaaaa aaaaaaaaaa 3180 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 3220 //