Dbfetch
ID FJ361359; SV 1; linear; genomic RNA; STD; VRL; 4821 BP. XX AC FJ361359; XX DT 03-NOV-2008 (Rel. 97, Created) DT 09-APR-2009 (Rel. 100, Last updated, Version 2) XX DE Iris yellow spot virus segment M, complete sequence. XX KW . XX OS Iris yellow spot virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Tospoviridae; Orthotospovirus. XX RN [1] RP 1-4821 RX DOI; 10.1007/s00705-009-0349-1. RX PUBMED; 19288236. RA Bag S., Druffel K.L., Salewsky T., Pappu H.R.; RT "Nucleotide sequence and genome organization of the medium RNA of Iris RT yellow spot virus from the United States"; RL Arch. Virol. 154(4):715-718(2009). XX RN [2] RP 1-4821 RA Druffel K.L., Pappu H.R., Bag S.; RT ; RL Submitted (07-OCT-2008) to the INSDC. RL Plant Pathology, Washington State University, Pullman, WA 99163, USA XX DR MD5; b2a83c7544b50d25a839fda48fab2dd4. XX FH Key Location/Qualifiers FH FT source 1..4821 FT /organism="Iris yellow spot virus" FT /segment="M" FT /mol_type="genomic RNA" FT /country="USA:WA, Pasco" FT /isolation_source="onion field" FT /db_xref="taxon:60456" FT CDS 64..999 FT /codon_start=1 FT /product="non-structural protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="InterPro:IPR006889" FT /db_xref="UniProtKB/TrEMBL:B6VB50" FT /protein_id="ACJ04668.1" FT /translation="MSLLTNVLENFKKNDNKELIPAVKTIGTDNKLALGRKVTKKDVDA FT AIKNKASTFNGNQYISSSDSTVLGSYESGESVENSSDDILSRLIVEKSTHLSNWKDDSL FT IGNGDEKVSCTINIIPTWDSKRKYMHLSRLIVWVVPTIPDSKGFVKATIIDQNKMTPKE FT KIIISKQGTLENPLCFVFHLNWSFNKDRNVPKRCMQLNLTSNEKYAKGVSFASVMYSWV FT KNFCDTAIASDSNTCDVIPINRAKAIRSAALIEACKLMIPKGTTGKAIKNQITSLQKLA FT EKVAFEEEEDDNDGALEIEIENPENRFNEV" FT CDS complement(1394..4804) FT /codon_start=1 FT /product="glycoprotein" FT /note="Gn/Gc" FT /db_xref="GOA:B6VB51" FT /db_xref="InterPro:IPR005167" FT /db_xref="InterPro:IPR014414" FT /db_xref="UniProtKB/TrEMBL:B6VB51" FT /protein_id="ACJ04669.1" FT /translation="MNLHYLLLYCFGVYLMFTITDVLLMNNAEDHEDIKMELKRLKDRY FT KNDDPEDLIENKVIDPGYSFPSLDPKIPERIPREATTNVPSTTNVPSTTDRQVVETLSC FT DDFDKSKCIIKGTSDFNAHYQVKGSDSVIACITDSEKIFDACLFDSDIKRRTFLKVPVV FT PVLKLENKRVLEVGSKFFFVDSSNDPILSDPKSGMANPTVSRLSVRLSGDCIINQVSMS FT SPYMIKIKSTETIGFAVKNIKNPQAINFQTASGDKSVYFKIDELDGNHFFLCGDKSSFI FT KKVDVPVRNCVSKYADEPKKIFFCTNFSYFKWFFTFLVITFPITWILWKAKNAFSIWYD FT IMGILTYPILISINYLWLYFPFKCKSCGNLSFLSHECSRLCVCNQSKPSREHSKECYLF FT HKDTKKWRSLSLIDHFQFIVNTKISSEFLVFLTKMLIAGVLMSCIPSSLALSSERNVCV FT EKCFYSKDLEKLTTDKDGSIKDSIDTCECSIGELITETVYRGGAPISRAAIKNDCVSLS FT SKCLNSSNQAENLFACRHGCNALSTLNKIPKVMYDRGYKGVEFSGNLTVLKIANRLRKG FT FVDNQSEVRNLESKVSKELSYFKSLKVDDVPPENLMPRQSLVFSTEVDGKYRYMIEMDI FT KKETGSVFLLNDDSSHIPMEFMVYVKSVGVEYDIRYKYSTAKVDTTVTDYLSTCTGDCK FT DCRKSKTPSGHNDFCIQPTSWWGCEELGCLAINEGAICGHCTNVFDLSTLVNVYQVVES FT HIIAEICIKSLNGYDCRKHSDRAPIQTDYYQLDMTVDLHNDFMSTDKLFAVTKNQKILT FT GSISDLSDFSSGAFGHPQITVDGTPLAVKATISRDQFTWSCSAVGSKSVNIKQCGLYSY FT NMIYALTQSKDFSVIDEENNKLYMIKDSLVGKLKVVIDMPKEMFKKTPVKPILSETKII FT CSGCTKCAMGLECVMEYTSDTTFSSRLKMDGCSFKSDQIGSYIGPNKKLIKAYCSESVK FT DKTVQVIPEDQEELSIELKIDQVNVIDQDTIISYDDKSAHDENIHHADTGIATLWDWIK FT APFNWVASFFGSFFDLVRVILVILAVIVGLYILGYIYNLSFSYYKEKRKRKMEFDLEEA FT EESLIIKSNKYGEPRRRTPPKTFQFPLDL" XX SQ Sequence 4821 BP; 1594 A; 853 C; 807 G; 1567 T; 0 other; agagcaatcg gtgcagcaat caaatatcca tttacaactt ctgccaattg aaaagtaacc 60 agtatgtctc tcctaactaa cgtgcttgaa aacttcaaaa agaatgacaa caaggagctg 120 attcctgcag ttaaaaccat tggcacggac aacaaacttg ctttaggaag aaaagtaaca 180 aagaaagatg tagatgctgc tataaaaaac aaagcatcaa cattcaatgg aaaccaatac 240 atttcatcat ccgattcaac agttttggga tcctatgaaa gcggtgaatc agttgaaaat 300 agttcagatg acatactgtc caggttaata gtggagaaaa gcactcattt aagcaattgg 360 aaagatgatt cccttattgg aaatggagat gaaaaagtta gctgtaccat caatattata 420 ccaacatggg acagtaaaag gaaatatatg catctgtcaa gactaattgt ttgggttgtt 480 cctacaatac cggactctaa aggatttgtc aaagcaacta tcattgacca aaataagatg 540 acacctaaag aaaaaatcat cataagcaaa cagggaacac tcgaaaaccc attatgtttt 600 gttttccatc tgaattggtc tttcaataaa gataggaatg tgccaaaaag atgtatgcag 660 cttaatttga ctagtaacga aaaatatgcc aaaggagttt cttttgcatc agtcatgtat 720 tcttgggtta agaatttctg tgatacagct atagcatctg atagcaacac gtgcgatgta 780 atacccatca atagagcaaa agcaatcaga tcagctgctt taattgaagc atgcaaactc 840 atgatcccta aaggaaccac agggaaagcc ataaagaacc aaatcacatc tctacaaaaa 900 cttgctgaga aagtagcatt tgaagaagaa gaggatgaca atgatggtgc tttagagatt 960 gagatagaaa accctgagaa cagatttaat gaagtatgat cttaagtaat ccttgtgtgt 1020 tttatcttta tattaaacca aaatccaaaa tcatatattt gtaagcttgc gtgtgtatgt 1080 gtgttatata tatttaagac tattttataa aagtaaaagt aaaataaaat aaaataaaca 1140 aaataaaaat aaaaataaaa tatatatata taaaataata aaataaataa aataaataaa 1200 taaataagta gttgtatata aataaggcca aggccagctt tggccctttt aaggctcttt 1260 ttttgttttg ttttgtttta tttttatttt tatttttatt tattttattt tatctttatt 1320 tttattttat tttattttct tattttattt taaagctatc tctattaact aaattagtaa 1380 aagtaactta agtctaaaga tctaaaggga actggaaagt tttgggtgga gttctccttc 1440 taggttctcc atatttatta gactttatta taagagattc ttcagcttct tctaagtcaa 1500 attccatctt cctcttcctt ttctctttgt aatagctaaa agataaattg tatatgtagc 1560 ctagtatgta taagcctaca ataacagcta aaatcactaa aatcactctg actaaatcaa 1620 agaagctacc aaagaatgat gcaacccagt tgaaaggcgc tttgatccag tcccacaatg 1680 tggctattcc tgtatcagca tgatggatgt tttcatcatg agcacttttg tcatcataac 1740 tgattatggt gtcttgatct attacattaa cctgatcgat ctttaactct atagacaact 1800 cttcttgatc ttcaggaatt acttgaacag ttttgtcttt aacactttct gaacaatatg 1860 cttttatcag tttcttatta ggaccaatgt aactgcctat ctggtcagat ttaaaggaac 1920 acccatccat cttcagccga gaggaaaatg tggtatcaga agtgtactcc atgacacatt 1980 ctaatcccat agcacacttt gtgcacccag aacaaatgat ttttgtctca ctgagaatag 2040 gtttgaccgg tgttttcttg aacatctctt ttggcatgtc aatgacaact tttaattttc 2100 ccacgagaga atccttgatc atgtacagct tattgttttc ttcatctata acagagaaat 2160 ctttagattg cgtcaatgca tatatcatgt tgtagctgta tagtccacat tgtttaatat 2220 taactgattt tgatccaact gcagaacaac tccaagtgaa ttgatctcta gagatggtgg 2280 ctttaacagc caatggtgtt ccatctacag ttatttgagg gtgtccaaaa gcacctgaag 2340 agaaatcact taaatcagat atgcttcctg tgagaatttt ttggtttttg gtaacagcaa 2400 acagcttatc tgtgctcatg aaatcattgt gtaaatcaac agtcatatcc aactggtagt 2460 aatcagtctg tatcggtgct ctgtctgaat gcttcctaca atcataacca tttaaagatt 2520 tgatgcatat ttctgcaata atatgacttt cgacaacttg gtacacattg actaatgtac 2580 taagatcaaa aacatttgtg cagtgaccac aaattgcacc ttcgtttata gcaaggcaac 2640 ccagttcttc acaaccccac caagaagttg gttgtatgca aaaatcatta tgacctgaag 2700 gtgtttttga tttcctacaa tctttacaat ccccagtgca agtggacagg taatctgtga 2760 cagtggtatc gacttttgct gtagagtatt tgtaccggat atcatattct acaccaacac 2820 tttttacata aaccatgaac tccataggta tgtgagagct gtcgtcattc aaaaggaaaa 2880 cagaacctgt ttcctttttt atatccatct ctatcatgta tctgtatttt ccgtcaactt 2940 cagtcgaaaa cactaaagat tgcctaggca tgaggttctc aggagggaca tcgtctactt 3000 tgaggctttt gaagtacgac aactctttag aaactttaga ttctaaattc ctcacttcag 3060 attgattgtc aacaaatcct ttcctaagcc tattagcaat cttcagaacg gttaaattac 3120 ctgaaaattc tactccttta tagcctctgt catacataac ttttggtatc ttgtttagcg 3180 tggataaagc attacagcca tgcctgcatg caaacaagtt ttctgcttga tttgaactat 3240 tgaggcattt agaagacaac gaaacacaat cattctttat ggcggctcga gatatcggag 3300 ctcctcctct gtagacagtt tcagttatca attctccaat tgagcattca catgtgtcta 3360 tagaatcttt tattgaacca tctttatcag tagttaactt ttcaagatct ttgctataga 3420 aacatttctc aacacaaaca tttctttctg aagaaagtgc caaactggac ggtatacaag 3480 acattaagac tccagctatc aacatctttg ttaaaaacac aagaaactca gagctgatct 3540 tagtgttaac gatgaattga aagtggtcaa ttagtgatag acttctccac ttcttcgtat 3600 ccttatgaaa caagtaacac tcttttgaat gctctcttga tggtttggat tggttgcaaa 3660 cacaaagcct agaacattca tgcgaaagaa aagataaatt gccgcaagat ttgcatttga 3720 atgggaaata aagccaaaga taatttatgg aaataaggat cgggtaagtc aaaataccca 3780 ttatgtcata ccatattgaa aaagcatttt ttgccttcca aagtatccat gttataggaa 3840 aagttatcac taagaatgtg aaaaaccatt tgaaataaga gaaattagta caaaaaaaga 3900 tcttctttgg ttcatcggca tacttggaaa cacaattcct cacaggaaca tcgactttct 3960 ttataaagct tgatttatca ccgcataaga agaaatggtt tccatctagt tcatcaattt 4020 tgaaataaac agatttgtct ccagaagctg tctgaaaatt tatggcttga ggatttttta 4080 tgtttttgac agcaaatcca atggtttctg ttgattttat tttaatcata taaggagatg 4140 acattgaaac ttggtttatt atgcaatcgc cagagagtct tactgaaagc ctagatactg 4200 tagggtttgc cattcctgat ttagggtctg aaagtattgg atcgttagat gaatctacaa 4260 aaaagaattt agaacctact tctaatactc ttttgttctc tagctttaaa acagggacaa 4320 caggaacttt caagaaagtc ctccttttga tatcagaatc aaacaagcaa gcgtcaaata 4380 ttttttcaga gtctgttatg caagctataa ctgaatcaga accttttacc tgataatgag 4440 cattaaaatc gcttgtcccc ttgatgatgc attttgattt atcaaaatca tcacaagaaa 4500 gtgtctcaac tacttgccta tcggtagttg aaggaacatt tgtggttgaa ggcacatttg 4560 tggttgcttc tctcggaatc ctttcaggga tctttgggtc caaagatggg aaagaataac 4620 ctggatctat gactttgttc tcaataagat cttctggatc atcatttttg tatctgtctt 4680 tgagcctttt taactccatc tttatgtcct catggtcctc cgcattgttc attagtaaaa 4740 catctgtgat ggtgaacatc aagtatacac caaaacagta gagtagtaga tagtgtagat 4800 tcatcttagg ctgattgttt g 4821 //