ID FJ355946; SV 1; circular; genomic DNA; STD; VRL; 2782 BP. XX AC FJ355946; XX DT 05-NOV-2008 (Rel. 97, Created) DT 05-NOV-2008 (Rel. 97, Last updated, Version 1) XX DE Tomato yellow leaf curl virus strain Abadeh, complete genome. XX KW . XX OS Tomato yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2782 RA Pakniat Jahromy A., Behjatnia S.A., Izadpanah K.; RT "A new strain of Tomato yellow leaf curl virus (TYLCV) in Fars province"; RL (in) Unknown A. (Eds.); RL PROCEEDING OF 18TH IRANIAN PLANT PROTECTION CONGRESS:491-491; RL Unknown Publisher (2008) XX RN [2] RP 1-2782 RA Pakniat Jahromy A., Behjatnia S.A., Izadpanah K.; RT ; RL Submitted (30-SEP-2008) to the INSDC. RL Plant Virology Research Center, Shiraz, Fars 71441-65186, Iran XX DR MD5; 9e97de0888c13db232969cbe2d9b125e. XX FH Key Location/Qualifiers FH FT source 1..2782 FT /organism="Tomato yellow leaf curl virus" FT /strain="Abadeh" FT /mol_type="genomic DNA" FT /country="Iran" FT /db_xref="taxon:10832" FT CDS 148..498 FT /codon_start=1 FT /product="V2" FT /note="pre-coat protein" FT /db_xref="GOA:Q6VYI2" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q6VYI2" FT /protein_id="ACJ05690.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV FT PKAQNIQNVSKS" FT CDS 308..1084 FT /codon_start=1 FT /product="V1" FT /note="coat protein" FT /db_xref="GOA:B6VA04" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:B6VA04" FT /protein_id="ACJ05691.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVIFFLVRDRRPYGSSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN" FT CDS complement(1103..1486) FT /codon_start=1 FT /product="C3" FT /db_xref="GOA:B6VA05" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:B6VA05" FT /protein_id="ACJ05692.1" FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI FT ISIQIRFNHNIRKVMGIHKCFLNFRIWTTLQPPTGRFLRVFSYEVLKYLDSLWVISINN FT VIRAGDHVLYDVLEKHTKCNRKS" FT CDS complement(1227..1634) FT /codon_start=1 FT /product="C2" FT /db_xref="GOA:B6VA06" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:B6VA06" FT /protein_id="ACJ05693.1" FT /translation="MQPSSPSTSHCSQVSIKVQHKISKKKTIRRKRVDLDCGCSYYLHL FT NCNNHGFTHRGTHHCSSSREWRFYLGDKQSPLFQDNRTQPEAISNEPRHHFHSDKIQPQ FT HQEGNGDSQMFSQLPNLDDITASDWSFLKSI" FT CDS complement(1543..2616) FT /codon_start=1 FT /product="C1" FT /note="replication associated protein" FT /db_xref="GOA:B6VA07" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B6VA07" FT /protein_id="ACJ05694.1" FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLLALNTPTNKKFIRVA FT QELHEDGSPHLHVLIQFEGKYQCKNQRFFDLSSPTRSAHFHPNIQAAKSSTDVKTYVEK FT DGDFIDFGVFQIDGRSARGGQQSANDAYAEALNSGSKSEALNILKEKAPKDYILQFHNL FT SSNLDRIFQEPPAHYISPFLSSSFNQVPDELEVWVSENVMSSAARPWRPNSIIIEGDSR FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPLFA FT SINQGPTQDIQEENNKT" FT CDS complement(2172..2471) FT /codon_start=1 FT /product="C4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:B6VA08" FT /protein_id="ACJ05695.1" FT /translation="MKMGLLISMFSSSSKESTNVRTNGSSIYPLQPGQHISIRTFRQLR FT AQQMSRPTWRKTETSLILEFSKSMADQLEEVSNLPTTHMPKHSIQAANPRPSIY" XX SQ Sequence 2782 BP; 771 A; 533 C; 607 G; 871 T; 0 other; accggatggc cgcgcctttt ctttttatgt ggtccccacg aggatttcac agacgtcact 60 gtcaaccaat caaattgcat cctcaaacgt tagataagta ttcatttgtc tttatatact 120 tggtccccaa gtattttgtc ttgcataatg tgggacccac ttctaaatga gtttcctgaa 180 tctgttcacg gatttcgttg tatgttagct attaaatatt tgcagtccgt tgaggaaact 240 tacgagccca atacattggg ccacgattta attagggatc ttatatctgt tgtaagggcc 300 cgtgactatg tcgaagcgac caggcgatat aatcatttcc acgcccgtct cgaaggttcg 360 ccgaaggctg aacttcgaca gcccatacag cagccgtgct gctgtcccca ttgtccaagg 420 cacaaacaag cgacgatcat ggacgtacag gcccatgtac cgaaagccca gaatatacag 480 aatgtatcga agtcctgatg ttccccgtgg atgtgaaggc ccatgtaagg ttcagtctta 540 tgagcaacgg gatgatatta agcatactgg tattgttcgt tgtgttagtg atgttactcg 600 tggatctgga attactcaca gagtgggtaa gaggttctgt gttaaatcga tatatttttt 660 aggtaaagtt tggatggatg aaaatataaa gaagcagaat cacactaatc aggtcatatt 720 cttcttggtc cgtgatagaa ggccctacgg aagcagccca atggattttg gacaggtttt 780 taatatgttc gataatgagc ccagtaccgc aaccgtgaag aatgatttga gggataggtt 840 tcaagtgatg aggaaatttc atgctacagt tattggtggg ccctctggaa tgaaggaaca 900 ggcattagtt aagagatttt ttaaaattaa cagtcatgta acttataatc atcaagaggc 960 agccaagtat gagaaccata ctgaaaacgc cttgttattg tatatggcat gtacgcatgc 1020 ctctaatcca gtgtatgcaa ctatgaaaat acgtatctat ttctatgatt ccatatcaaa 1080 ttaataaaat ttatatttta tatcatgact ttctgttaca tttagtgtgt ttttcaagta 1140 catcatacaa tacatgatca cctgctctga ttacattgtt aatcgaaatt acccaaagac 1200 tatctaaata cttaagaact tcatagctaa atactcttaa gaaacgacca gtcggaggct 1260 gtaatgtcgt ccaaattcgg aagttgagaa aacatttgtg aatccccatt accttcctga 1320 tgttgtggtt gaatcttatc tgaatggaaa tgatgtcgtg gttcattaga aatggcctct 1380 ggctgtgttc tgttatcttg aaatagaggg gattgtttat ctcccagata aaaacgccat 1440 tctctgcttg aggagcagtg atgagttccc ctgtgcgtga atccatgatt attgcagttg 1500 aggtggaggt agtatgagca gccacagtct aggtctacac gcttacgtct tattgttttc 1560 ttcttggata tcttgtgttg gaccttgatt gatacttgcg aacagtggct cgtagagggt 1620 gacgaaggtt gcattcttga gagcccaatt tttcaaggat atgttttttt cttcgtctag 1680 atattcccta tatgaggagg taggtcctgg attgcagagg aagatagtgg gaattccccc 1740 tttaatttga atgggcttcc cgtactttgt gttgctttgc cagtccctct gggcccccat 1800 gaattcctta aagtgcttta aatagtgcgg gtctacgtca tcaatgacgt tgtaccacgc 1860 atcattactg tacacctttg gacttaggtc tagatgtcca cataaataat tatgtgggcc 1920 tagagacctg gcccacatcg tctttcctgt tctgctatca ccctcgatga taatactatt 1980 aggtctccat ggccgcgcag ctgaagacat gacgttctct gacacccata cttcaagttc 2040 atctggaact tgattaaaag atgaagataa aaagggagaa atataatgag ccggaggctc 2100 ctgaaaaatt ctatctaaat ttgaacttaa attatgaaat tgtaaaatat aatcctttgg 2160 ggccttctct ttcaatatat tgagggcctc ggatttgctg cctgaattga gtgcttcggc 2220 atatgcgtcg ttggcagatt gctgacctcc tctagctgat ctgccatcga tttggaaaac 2280 tccaaaatca atgaagtctc cgtctttctc cacgtaggtc ttgacatctg ttgagctctt 2340 agctgcctga atgttcggat ggaaatgtgc tgacctggtt ggagaggata aatcgaagaa 2400 ccgttggttc ttacattggt actttccttc gaactggatg agaacatgga gatgaggaga 2460 cccatcttca tgtagttcct gcgcaactcg tatgaatttc ttgttagttg gtgtatttag 2520 ggcaagtaat tgggaaagtg cttcttcttt agagagagaa caattaggat aagtcaggaa 2580 ataatttttg gcatatattt taaatagacg aggcatggtg aaatgaatcg gtgtccctca 2640 aagctctatg gcaatcggtg tatcggtgtc ttatttatac ctagacaccc aatggctatt 2700 tggtaatttc gtaaaagtac aatgtaattc aaaattcaaa attcaaaaat caaatcatta 2760 aagcggccat ccgtataata tt 2782 //