ID FJ355928; SV 1; linear; genomic RNA; STD; VRL; 6434 BP. XX AC FJ355928; XX DT 17-MAY-2009 (Rel. 100, Created) DT 26-SEP-2025 (Rel. 144, Last updated, Version 3) XX DE Valovirus valerienense strain AB90, complete genome. XX KW . XX OS Valovirus valerienense OC Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; OC Picornavirales; Caliciviridae; Valovirus. XX RN [1] RP 1-6434 RX DOI; 10.1007/s11262-009-0360-3. RX PUBMED; 19396587. RA L'homme Y., Sansregret R., Plante-Fortier E., Lamontagne A.M., Ouardani M., RA Lacroix G., Simard C.; RT "Genomic characterization of swine caliciviruses representing a new genus RT of Caliciviridae"; RL Virus Genes 39(1):66-75(2009). XX RN [2] RP 1-6434 RA L'Homme Y., Sansregret R., Plante-Fortier E.; RT ; RL Submitted (02-OCT-2008) to the INSDC. RL Virology, Canadian Food Inspection Agency (CFIA), 3400 Casavant O., RL St-Hyacinthe, Quebec J2S 8E3, Canada XX DR MD5; 74a20955b070c4d075e6f6af9a3e38c0. XX FH Key Location/Qualifiers FH FT source 1..6434 FT /organism="Valovirus valerienense" FT /host="Sus scrofa (swine)" FT /strain="AB90" FT /mol_type="genomic RNA" FT /geo_loc_name="Canada" FT /collection_date="Jan-2006" FT /note="previous name: Calicivirus pig/AB90/CAN, updated per FT ICTV VMR 40.1" FT /db_xref="taxon:3433097" FT CDS 11..5950 FT /codon_start=1 FT /product="polyprotein" FT /note="includes NTPase, VpG, protease, RdRp and capsid VP1; FT ORF1" FT /protein_id="ACQ44559.1" FT /translation="MSVTTDMAVQGVARDALKLAGAAKAPRILSGECPEPVPGSLLEMD FT EGDMFHYGVYLSHGYILDTVGVADDGVTGTVVVRTISHPWRDTRFRINCSVEELLTRVP FT AKVDYDLFVNNCWGMWKEWIPSLPDWYERERVLQACGPFHVPHQPWVDPNGKFLEQDYD FT CKHNTHTMLVIVKSCLRFLSKVSLKVLTKVKPLVLYHLLATTRPTFGGVLATFARLLEL FT YEVPLMDNILSFATLESGTRGWREGLNMLITGFGVVASFFCKKPLDWLNGALKRLTSAL FT KGSEDLATAANKVANVAKVLLPGILEDHWDADAAAATTLEEILHDSCAAELADPATRQM FT AITLAQKTVSNLKKYQVLVTGDEGAIKRALQRAEAALARLVLNQEDMTPRAQPYVLVLA FT GPPGCGKTTLATAIARAAAETLGGGVFQLNSDIDHWDSYTNQPVVCWEDFGAADHQADC FT RLLQKLADTAPLTLNCDKLENKGRAFTSRLIVITTNWQRLVPPEYAHPDAVLRRVTRHI FT YVRSQALEEWCRKGRVGPPPVAPDWSHQTLVGLPPMSVDWKGTTIYGRAQPLRIDYGAI FT VRPLMKAVLEGTRYLDLTGAMRELNLNMFQGMRLLAQLKLGMKPPIPYTGQPFRLNSHG FT YHIEVFSNNGKADYRNITEATTSPTDQPLAEIQAELDHQDLTGTKRPDINFLRKEAGQR FT STTSVQDLLTITITNMEVNWRTLVRLACQGLNFLFGVVAVTDTNTTASDLALVRTLGFE FT AKGKTKRGTGQKHHVRGGPRYRFSQAEYDDFLARRADAKRRGVVYTVEDYPDDIGAYEG FT DDVYNYTGEEPGFQAPSRAPPRLLDEGKNHVGWAIVDGERLVTPTHVAKAAHWVWKGEK FT MSPVQLRGAAGEYAEIDARSLRGKPLEWVAEVEPHSLAHLWEDRDGKPERVIGRVLSTA FT DVLVEGSRVAGVRIKVVTGETRAGDCGRPWVQVDACGVERVLALHTASLPGLGIAFGQR FT KVQFEATRKPPPPNLVRSHPLADGTHLWLTPYGKVAERRSGPPALGKNDPRNPTPLLTL FT ALTGLEPFLGPDTSREPQCAAVVTVQVLLKLRSLVGRLDPWDDETAFASLDQTTSSGYP FT NYTNKDPTRAHIQATRARVEDFMQGKGELHPPVYTAALKDEPYLLEKVAAGKRRLLFCS FT PFETTMACARVFGPVTEALKSVRLRWPGCVGVKPAVEWAFLVHHLEMDGTLTYCADYSR FT WDSTLPRWLLKRALWVMTKLSTFSRAHEFVNFLSQPRWVICGAKKFLVEKGLPSGIPMT FT SILNCVAHWIASAISLTNCGYDPSEAIRVPLLVYGDDEVIALKPELSAAYFEHMRALGF FT CPTGPDKGPTIHGVKATAMEFLSRRTRWEGGTYVGALKEESIRRQLHLTRGPKHTDPTE FT VRLPHAEYVTQLHCALGEASLHGRKFFHAFCDEVAEAVRLSDIDFDFWTFQAYFDWVQS FT EAMELEGAKDSSTPVPAGATLAENPTPAPLPENTAGLALAPTINPIDPYILETFVEVPG FT GVFTIGPDTTTNQVLLELPVGPGLNMYLNHLWMMYAGWSGGFEIQIQVAGNAFVSGKII FT FAVVPPGVHLPTNSTAASGYPHVILDLRVADSIHLQVPDVKNISYHLHGEQGKNARLVA FT MAYTQMRATAPTAEFQVEVRMLSRPQADFAFTMVVPPEQEAALTIWPLPTRPVALMTNP FT RFPVGPIKALVADPAVTQVYQQLGRYSFEEGGPLGCSTLGPAQSWPFVGIYHASSQSIE FT TMTGPEFDDPFIIGAQPTSLGRCDFGGSFRALVAEYNPTDGTIGRGSLGNFVAQTDYGP FT GVRIGLSLESISDGSHVVVQVMASNAATNNELNTSPRPIWDWPDAVAPIVTPNPAETLL FT MFHSGIPGADNRTVREVSCLLPSELFASFLETRDTWQPGNCALVSYTLDGLPLFEAKVY FT SSGFMTVPATTVVRRWDSGGYFTFLRWVNWNYVVTPLRGAAAARWL" FT CDS 5941..6393 FT /codon_start=1 FT /product="VP2" FT /note="minor basic structural protein 2; ORF2" FT /protein_id="ACQ44560.1" FT /translation="MAISPGAMVAGAGLQAAGDLFSTIYLVENQKAMAAKQRELTRELN FT HQWMDTTKAMQIEALNSSYNTLRGAGSTAADAALLANKGGAGAALTWTLGGFKNYAPGA FT QLNGRYTAPTTSTCAQLAQGTYGLTKKAISKLQQIPSSRRGYYRLV" XX SQ Sequence 6434 BP; 1486 A; 1776 C; 1716 G; 1456 T; 0 other; gtgatttgca atgtctgtta cgacagacat ggcagttcaa ggagtcgcac gcgatgcctt 60 gaaacttgct ggggccgcga aggccccaag aatcctttca ggtgagtgcc cggaacccgt 120 tccgggttcc ttgcttgaga tggatgaagg tgacatgttc cactacggtg tgtacttgtc 180 acatggctac attttggata ctgtgggtgt ggcagacgat ggtgtgactg gcacagtagt 240 cgttcgcacc atctcacacc catggcggga cacacgtttt aggatcaact gcagtgtgga 300 ggagctgctg acacgtgtgc ccgcaaaagt cgattatgac ctttttgtca acaattgctg 360 gggtatgtgg aaagagtgga taccatcttt gcctgattgg tatgagagag aacgtgttct 420 ccaagcatgt ggaccattcc acgttccaca ccaaccttgg gtggatccca atgggaagtt 480 cctggaacag gactacgact gcaagcacaa cacacacacg atgcttgtaa tcgtgaaatc 540 ttgtctaagg ttcctctcca aggtttcact caaggtgctc acaaaggtca aacctctggt 600 cctttaccac ctacttgcca ccaccagacc gacctttggt ggtgtcctcg ccacttttgc 660 caggttattg gagctctatg aggtgcctct aatggacaac attctctcct ttgcaacgct 720 ggagtctggc actaggggct ggcgtgaggg cctcaacatg ttgatcactg gctttggtgt 780 ggtggcttcc ttcttctgca aaaaacccct ggattggctt aatggtgccc ttaagcgcct 840 caccagcgct ttgaagggct ctgaggactt ggcgactgct gcaaacaagg ttgccaacgt 900 agccaaagtc ctgcttcccg gcatacttga agaccattgg gatgccgatg cagcagcagc 960 caccacccta gaggaaatcc tacatgactc atgtgcggcc gagttggcag acccggccac 1020 acgccagatg gcaatcaccc tggcacaaaa gactgtctct aacctcaaga agtaccaagt 1080 cctggtcacc ggtgacgagg gtgccatcaa gagggccctt caaagggcgg aagctgccct 1140 ggcacgtctg gtattgaacc aggaggacat gactccaagg gcacaaccct acgtcctggt 1200 cttagctggc ccccctggct gtgggaagac caccttggca accgcaatag cacgtgcggc 1260 tgccgagacc cttggaggtg gagtcttcca gctgaactca gacattgacc actgggattc 1320 ctacacaaat caaccagtgg tgtgctggga agactttggc gcagcagacc atcaagcaga 1380 ctgtcgcctc ctgcagaagc ttgccgacac agcacctctc acactgaact gtgacaagct 1440 tgagaacaag gggagagcct ttaccagcag actcatcgtc atcacaacca actggcagag 1500 gcttgtcccc ccagagtatg cccacccaga tgccgttctg cgaagggtca ccaggcacat 1560 ctatgttcgc tcccaggcac tggaggaatg gtgtcggaag ggtagggttg ggccaccacc 1620 ggtggcacct gattggagtc accaaacact tgtgggtctg ccaccaatgt cagtggactg 1680 gaagggcacc acgatctatg gtcgcgccca gcccctgcgc atagattatg gtgcgatagt 1740 gcgacctctc atgaaggcgg tcctggaggg gacgcgctac ctggacctta ctggtgccat 1800 gagggaattg aatttgaaca tgttccaggg gatgcgcctc ctggcacagc tcaaattggg 1860 catgaagccg cctatacctt acactggaca acctttcaga ctcaactccc atggctatca 1920 cattgaggtt ttctcaaaca atggtaaggc agattacagg aacatcacag aggccaccac 1980 aagtcccacc gaccaacccc tagctgaaat ccaggccgaa ctagaccacc aggacctgac 2040 cgggaccaag agacctgaca tcaacttcct gcgcaaagag gccggtcaga gaagcacaac 2100 ctctgttcaa gacctcttaa ccatcaccat cactaatatg gaagtaaatt ggcgcactct 2160 tgtgcgccta gcctgccagg gcctgaactt tctctttggc gtagtcgcag tgacggatac 2220 taacaccaca gccagtgatc ttgctctggt tcgtaccctg ggtttcgagg ccaagggcaa 2280 gaccaagagg ggcacgggcc aaaaacacca cgtccgtggt gggcctcgct accgcttctc 2340 gcaagctgag tatgatgact ttttggccag gagagctgat gccaagagac gtggcgtggt 2400 ctacacagtt gaggactatc ctgatgacat tggtgcctat gaaggtgatg atgtttacaa 2460 ctacactgga gaggaacctg gcttccaggc accttcccgt gcgccaccaa ggttgctgga 2520 tgaagggaag aatcatgttg gttgggcgat tgttgatggt gaacgcttgg tcactcctac 2580 tcatgtggcc aaagccgccc actgggtctg gaagggggag aaaatgtctc ctgtgcagtt 2640 gaggggggcc gctggagaat acgcggagat tgatgccaga tcattgcgag gcaaacccct 2700 agagtgggta gcagaagtag aaccacactc tttggcacac ctctgggagg acagagatgg 2760 gaaaccagaa cgtgtgattg gacgtgtgct ctcgacagct gacgtcttgg ttgagggttc 2820 acgtgtggct ggtgtccgca tcaaggttgt caccggtgaa actagagccg gggactgtgg 2880 caggccctgg gttcaggttg atgcctgtgg tgttgagagg gtgcttgccc tgcacactgc 2940 aagcctacca ggcctcggca tcgcctttgg acaacgaaag gtgcagttcg aagccacacg 3000 caagccacct cctcccaacc tggtgcgtag ccaccctctc gccgatggca cgcacctttg 3060 gctcacaccc tatgggaagg ttgccgaaag gcgttctgga ccacctgcgc ttggtaagaa 3120 tgacccacgt aaccctacac cacttctgac cctcgcactg actggtttgg aacccttcct 3180 ggggccagac acatctaggg aaccacagtg cgcagctgtg gtcacggtcc aagtcctcct 3240 taaacttcgg tcccttgtgg gccgcttgga tccctgggat gatgaaacag cttttgcttc 3300 cctagaccag accacctcct ctggttaccc aaattacacc aacaaagacc ccacacgcgc 3360 acacatccag gccacacgtg ctcgtgttga ggacttcatg caagggaaag gtgaattaca 3420 cccaccagtc tacacagcag cgctcaaaga tgagccctac ctcttggaaa aagtggctgc 3480 tgggaagagg cggttgctct tctgctcacc ctttgagacc accatggctt gtgccagggt 3540 tttcggacct gtgacagagg cactcaaatc agtgcgcctg cgctggcctg gctgcgtcgg 3600 tgtgaagcct gctgtagagt gggctttctt ggtacaccac ctggagatgg atgggaccct 3660 gacctactgc gctgactact cgcggtggga ctccaccttg ccacgttggc ttttgaagcg 3720 cgcactctgg gtcatgacca agttgtccac cttctctagg gctcatgagt ttgtgaactt 3780 tctgtcgcag cctcgctggg tgatctgtgg tgccaaaaag ttcctggtgg aaaaagggct 3840 accctctggc attccgatga ccagcatact caactgtgtg gcacactgga ttgcctcagc 3900 catttccctc accaactgtg gctacgatcc atcggaagcc atacgtgtgc cactcctggt 3960 ctatggtgat gatgaagtca ttgccctgaa gcccgaactc tctgcagcct actttgagca 4020 catgagagcc ctaggcttct gcccaactgg tccggacaaa ggccccacca tccatggtgt 4080 gaaggcgaca gcaatggagt tcttgtccag gaggacacgc tgggaagggg gcacctatgt 4140 tggtgccctc aaagaagaat ccattaggag acagttgcac ctgacacgtg gtccaaaaca 4200 cactgatcca actgaagtcc gtctgcccca cgcagagtat gtgacacaac tacactgtgc 4260 actgggtgag gcctccctac atgggaggaa gttcttccat gctttctgtg atgaggttgc 4320 tgaggctgtc cgactcagcg acatcgattt tgatttttgg acttttcagg cctattttga 4380 ttgggtgcag agcgaagcca tggagctgga gggtgcaaaa gactcgagca cgccagtgcc 4440 agctggtgca actctggcag aaaatccaac acctgccccc ctgccggaga acacggcagg 4500 tcttgcactt gccccaacta ttaacccaat tgatccctac atcctggaaa cctttgttga 4560 agtccccggg ggtgtgttca caattggccc ggacactaca accaaccaag tccttctgga 4620 actacccgtg ggaccaggtc taaacatgta ccttaaccac ctttggatga tgtatgctgg 4680 ctggtctggt ggctttgaga tccagattca ggttgctgga aatgccttcg tttcaggcaa 4740 gatcatcttt gccgttgtgc caccaggtgt gcatctcccc acaaattcaa cagctgcctc 4800 tggttacccg catgtcatct tggacttaag agtggctgac agcattcacc tacaggtgcc 4860 ggatgtgaag aacatctcct accacctgca tggtgagcaa ggcaagaatg ccaggttggt 4920 tgcaatggcc tacacccaga tgagggccac cgcgccaact gccgaattcc aggtagaggt 4980 gcgtatgctc tctcggcccc aggcggactt tgccttcacc atggtggtgc cacctgagca 5040 agaggcggcc ctgactatct ggccgctgcc aacacgaccc gttgccctca tgacaaaccc 5100 caggttcccc gttggcccga taaaggccct cgtcgcggac ccagcggtga cccaggtcta 5160 ccagcagctt ggacgctact cctttgaaga gggggggcct ttgggctgct ccactttggg 5220 gccggcccaa tcttggccct ttgttggcat ttaccatgct tcctcacaga gcattgaaac 5280 tatgacagga cctgagtttg atgatccctt catcattggt gctcaaccca cctccctggg 5340 ccgttgtgac tttggtggtt ccttccgtgc actggtggca gaatacaacc ccactgatgg 5400 cacgattggc cgtggttctt tgggcaactt tgttgctcag acggactatg gtcctggtgt 5460 taggataggt ctctcccttg aatcaatctc tgatggctca catgttgtgg tacaggtgat 5520 ggcttccaac gcagcgacta acaatgaatt gaacacctcc cccaggccaa tctgggattg 5580 gcctgacgct gtggcaccta tagtcacacc aaatccagct gagacacttc ttatgttcca 5640 ttctggcatc ccaggagctg acaacaggac agtgagagaa gtttcctgct tactcccctc 5700 tgagctcttt gcaagtttcc tggaaactag ggacacctgg caaccaggga actgtgcact 5760 ggtttcttac accctggatg gcctaccact ctttgaggcc aaggtttatt cctcaggatt 5820 tatgaccgta ccggcaacaa cggtggtgcg ccgctgggat tccggtggct actttacctt 5880 cttgaggtgg gtgaactgga attatgtggt gacacctctc agaggcgccg ctgcagcaag 5940 atggctataa gtccgggtgc aatggttgcg ggcgctggcc ttcaagcggc tggcgacctg 6000 ttttccacca tctacttggt ggagaaccaa aaggccatgg cggccaagca gagagagtta 6060 accagagagt taaaccatca gtggatggac accacaaaag ccatgcaaat tgaggccctt 6120 aattcttcct ataacaccct gcgtggtgca ggttccacag cagctgatgc agcacttttg 6180 gcaaataaag gtggtgctgg cgccgctttg acttggacac tcggtggttt taagaactat 6240 gccccgggtg cacaactcaa tggccgctac actgccccaa ctacttcgac ctgtgcgcaa 6300 ttggctcaag gcacatatgg tctaacaaag aaagcaatct caaaactgca acaaataccc 6360 tcgtcgaggc gtgggtacta tagattggtc tgagctttga aaactcatta aaaaaaaaaa 6420 aaaaaaaaaa aaaa 6434 //