ID FJ355920; SV 1; linear; genomic RNA; STD; VRL; 6496 BP. XX AC FJ355920; XX DT 31-OCT-2008 (Rel. 97, Created) DT 31-OCT-2008 (Rel. 97, Last updated, Version 1) XX DE Citrus tatter leaf virus strain LCd-NA-1, complete genome. XX KW . XX OS Citrus tatter leaf virus OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; OC Capillovirus. XX RN [1] RP 1-6496 RA Lin Y.-H., Su H.-J., Lee Y.-S., Hung T.-H.; RT "Strain-differentiation and development of rapid detection for Citrus RT tatter leaf virus"; RL Unpublished. XX RN [2] RP 1-6496 RA Lin Y.-H., Su H.-J., Lee Y.-S., Hung T.-H.; RT ; RL Submitted (03-OCT-2008) to the INSDC. RL Department of Plant Pathology and Microbiology, National Taiwan University, RL No. 1, Sec. 4, Roosevelt Road, Taipei, Taiwan 106, Taiwan XX DR MD5; 7ed8453245423233fbb8b283a43d2544. DR EuropePMC; PMC2943576; 20644968. XX FH Key Location/Qualifiers FH FT source 1..6496 FT /organism="Citrus tatter leaf virus" FT /host="Citrus sinensis Osb." FT /strain="LCd-NA-1" FT /mol_type="genomic RNA" FT /country="Taiwan:Nan-ao" FT /collection_date="Apr-2004" FT /db_xref="taxon:33759" FT CDS 36..6353 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:B6V9Z6" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR008745" FT /db_xref="InterPro:IPR008879" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:B6V9Z6" FT /protein_id="ACI96297.1" FT /translation="MAFTYRNPLEIAINKLPSKQSDQLLSLTTDEIEKTLEVTNRFFSF FT SITPEDQELLTKHGLTLAPIGFKSHSHPVSKMIENHLLYICIPSLLSSFRSVAFFSLRE FT NKVNNFIKMHSVFSHGKIKSLGMYNAIIDGKDKYRYGEVSFTSFRDRVIGLRDQCLTRN FT KFPKVLFIHDELHFLSPFDIAFLFETIPEIDRVVATTVFPIELLFGDKVSKEPRVYTYK FT VHGSSFSFYPDGVASECYEQNLANSKWPFTCSGIQWANRKIRVTKLQSLFAHHVFSFDR FT GRACNEFNHFNKPSCLLAEEMRLLTKRFDKAVINRSTVSSLSTYMACLKTANAASAVAK FT LRQLEKRDLYPDELNFVYSFGEHFKNFGMRDDFDVSVLQWVKDKFCQVMPHFIAASFFE FT PTEFHLNMRKLLNDLATKGIEVPLSVMVLDKVNFIETRFHARMFEIAEAIGVKLDSLGK FT RFDYETESEEYFSENGYLFIPSKANPSRNWILNSGSCKIDYTRLIRARRFRLKRDFIDK FT IAAGKVPQRQLFLELGPRLTFESGKNEGEVSNEIEIIKDSEVANVPETSYVPLSTEDGQ FT GFEGSIPIDLINAFEPEEVKLPKRKRKNDGVFKAISAHLGIEVQDLLNFLVNEDISDEL FT LDCIEEDKGLSHEMIEEVLVTKGLSMVYTSDFKEMAVLNRKYGINGKMYCTIKGNHCEL FT SSKECFIRLLKEGGEAQMSNENLNADSLFDLGKFVHSRERAVKLAKSIARGTTGLLNSF FT DPAFCKAMVTLSELFPENFSSVVGLRMGFAGSGKTHKVLQWINYTPNVKRMFISPRRML FT ADEVEGQVKGTSCQIHTWETALKKIDGTFMEVFIDEVGLYPPGYLTLLQMCAFRKIVKG FT QSERFLKSKLAELSKTCLNIRCFGDPLQLRYYSAEDTNLLDKTHEIDLMTRTIKHKYLL FT QGYRFGQWFKELIDMPTRVDESKFSRKFFADISSVNTEDYGLILVAKREDKGVFAGRIP FT VATVSESQGMTISKRVLICLDQNLFAGGANAAIVAITRSKVGFDFILKGNSLKEVQKMA FT QKTIWQFVLEGKNIPMERVVNMNPGASFYESPLDVGNSSIQDKASHDLFIMPFINLAEE FT EADPEEVVGDVIEPVEWFKCHVPVFDTDPMLAEIFEKVAAKEKREFQSVLGLSYQFLDM FT EKNGCKIDILPFARQNVFPHHQSSDDVTFWAGVQKRIRKSNWRREKSKFEEFESQGKEL FT LSEFLSMLPFEFKVNIKDIENGEKSFLEKRKLKSEKMWANHSERSDIDWKLDHVFLFMK FT SQYCTKEGKMFTEAKAGQTLACFQHIVLFRFGPMLRAIESAFLRSCGDSYYIHSGKNFF FT CLDSFVTKNASVFDGFSIESDYTAFDSSQDHVILAFEMALLQYLGVSKEFQLDYLRLKL FT TLGYRLGSLAIMRFTGELCTFLFNTFANMLFTQLKYKIDPRKHRILFAGDDMCSLSSLK FT RRRGERATRLLKSFSLTAVEEVRKFPMFCGWYLSPYGIIKSPKLLWARIKMMSERQLLK FT ECVDNYLFEAIFAYRLGERLYTILKEEDFEYHYLVIRFFVKNSKLLTGLSKSLIFEIGE FT GIGAEWLSSMSTISSRRSSQLTSKLTPSPHLNCTKMQPFLSQTYSTALKGLSQMSKFLQ FT GQGMDSCCLILNSLMTLRLTPLERKVTNTNIYTMESSWWESKPSCLTLEEWKGESSYMT FT GLVWTQKGVTSVLICSNLSPIVVTLDSDLSTVFQQLMQIWPKDLGSEWILIVHNMNRTR FT NCLLLTLGSHTDVSTQQGSLKPKLVIQGGLHRLSAAARHSSSTKKLSWPSWITNPRCFW FT RRVHQMCMLKRDYLGATKFEDRAQFLLKEGQTQSCRKREDLGPSQLESKDLEKMSLEDV FT LQQARRHRVGVYLWKTHIDPAKELLTVPPPEGFKEGESFGGRELYLLLCNHYCKYLFGN FT IAVFGSSDKTQFPAVGFDTPPVHYSLTTTPKKGETEEEKKAREGSSGEKTKIWRIDLSN FT VVPELKTFAATSRHNSLNECTFRKLCEPFADLAREFLHERWSKGLATNIYKKWPKAFEK FT SPWVAFDFATGLKMNRLTPDEKQVIDRMTKRLFRTEGQKGVFEAGSESNLELEG" XX SQ Sequence 6496 BP; 1964 A; 1182 C; 1492 G; 1857 T; 1 other; aatttaacag cgcttaattt ccgcgcttta cgtcaatggc tttcacttac aggaaccctc 60 tagaaattgc aattaacaaa cttccaagta agcaatctga tcaattgctt tctttgacca 120 ccgacgagat tgaaaagacc ttggaagtga caaatcgctt cttttctttt tcaatcactc 180 cagaagatca agaactgttg accaaacatg gtttgacact tgcaccaatt ggatttaaat 240 cacattctca tccagtatct aaaatgattg aaaatcatct tctatacata tgtatcccta 300 gtcttctgtc ttcttttaga tcagttgcct ttttttcttt aagggaaaat aaagttaata 360 atttcatcaa aatgcattca gtcttctcac acggaaaaat caagtcttta gggatgtaca 420 acgcaatcat cgatggaaag gacaaataca gatatggtga ggtctctttc acttccttca 480 gagacagagt gattggcttg agggaccaat gcttgacacg taataaattt cctaaagtcc 540 tctttatcca tgacgagctg cactttttaa gcccttttga tatagccttt ttatttgaga 600 ccataccaga gattgacagg gttgtagcca caactgtctt cccaatcgaa ctactttttg 660 gtgataaggt ttcaaaagaa cccagggttt acacttataa ggttcatggt tcctctttct 720 ccttttaccc tgatggtgtt gcctctgaat gctatgagca aaatcttgca aactcaaaat 780 ggccttttac ctgtagtggt atccaatggg ccaacaggaa gatcagagtc accaaattgc 840 aaagcctttt tgctcatcac gttttttcat ttgacagggg aagggcttgc aacgaattca 900 atcacttcaa taagccgagt tgcttacttg cagaagagat gcgtttgctc acaaaaagat 960 ttgataaggc tgtcattaac aggagcacag tttcctctct cagtacttat atggcatgtc 1020 tcaaaactgc aaacgcagcc tcagcggttg ccaaattgag acagctggag aagagagatt 1080 tataccccga tgaactaaat tttgtttatt cttttgggga acactttaaa aactttggaa 1140 tgagagacga ctttgatgtg tcagtgttgc aatgggttaa agataagttc tgtcaagtaa 1200 tgcctcattt tatagctgcc agtttttttg aacctacaga atttcaccta aacatgagga 1260 agttgctaaa tgacctagct accaagggga ttgaagttcc tttgtccgtg atggttctgg 1320 acaaagtaaa cttcattgaa accaggtttc atgctagaat gtttgaaata gcagaggcca 1380 taggggtgaa gttagactcg cttggaaaaa gatttgatta tgaaactgaa agtgaggagt 1440 acttttcaga gaatggttat ctctttatcc cctctaaggc aaatccaagt aggaattgga 1500 ttttaaactc tggctcctgt aaaattgact acacacggtt gatcagggcc agaagattta 1560 gattgaaaag ggactttata gacaaaattg ccgctgggaa ggtccctcaa cggcagctat 1620 ttttagaact aggtccgagg ttgacgtttg agtctgggaa aaatgagggt gaggtgagta 1680 atgagatcga gattataaag gattccgaag ttgccaatgt gccagaaaca tcctacgttc 1740 cattgtcaac tgaagacggg caaggctttg aaggttcaat accaatcgac ttgataaatg 1800 catttgaacc agaagaagtc aaactcccga aaagaaaaag aaaaaatgac ggcgttttca 1860 aagcaatatc tgctcaccta ggaattgagg ttcaagacct tttaaatttt ctggtcaatg 1920 aggacatttc agatgagcta ctagactgca ttgaagagga taaaggcttg tcacatgaga 1980 tgattgaaga agttctagta accaaagggc tttccatggt ttacacctct gatttcaaag 2040 aaatggcagt tcttaataga aaatatggaa tcaatgggaa aatgtactgc acaatcaaag 2100 gtaatcattg tgagttgagt tcaaaggagt gctttattag gctattgaaa gaaggtggtg 2160 aggcacagat gtcaaatgaa aatctgaatg ctgactcatt atttgacctt ggaaagtttg 2220 tacatagtcg ggaaagagcg gtcaaattgg caaagtctat agctcgaggg accacaggtc 2280 ttttgaattc cttcgatcca gccttctgca aagccatggt cactctctca gagctatttc 2340 ctgagaattt ctcttcagtg gttgggttga gaatgggatt cgctggctct ggcaagacac 2400 acaaggttct tcagtggata aactacactc caaatgtcaa gagaatgttc atcagtccta 2460 gaagaatgtt agcagatgag gttgaaggac aggttaaagg aacgtcttgc cagattcata 2520 catgggaaac tgctttgaaa aagattgatg ggaccttcat ggaagtcttc atcgatgaag 2580 taggtttgta tccacccgga tatctcacac ttttacaaat gtgtgctttt agaaagatag 2640 tgaagggcca gagtgagagg ttcttaaaaa gtaagttggc tgaattgtca aagacgtgcc 2700 tgaatattag atgtttcggt gacccactgc aactaaggta ctattctgct gaagatacaa 2760 accttctaga caaaactcat gagattgacc tgatgactag aaccatcaag cataaatatc 2820 tccttcaggg gtacaggttt ggtcaatggt tcaaggaatt gatagacatg ccaaccagag 2880 tggatgaatc aaagttctca agaaaatttt ttgcagacat ttcaagtgtg aatactgagg 2940 actatgggct aatattggtg gcaaaaaggg aagacaaggg agttttcgct gggagaatcc 3000 ctgttgccac agttagtgaa tctcaaggga tgaccattag caagagagtg ttgatatgcc 3060 tagaccaaaa cctatttgct gggggtgcaa atgctgcaat tgttgcaatt actagatcga 3120 aagttgggtt tgactttatc ctcaaaggaa attcactaaa agaagtgcag aaaatggcac 3180 aaaagacaat atggcagttc gtgctagaag gcaaaaatat tccaatggag agggtagtga 3240 acatgaaccc tggggctagc ttttatgaga gtcctttgga tgtgggaaac tcatcaatcc 3300 aagacaaggc ttcacatgat ttgttcataa tgccctttat aaacttggct gaggaggaag 3360 ctgaccctga ggaagtcgta ggagatgtaa ttgaacctgt tgagtggttt aagtgccatg 3420 tgcctgtgtt tgatacagat ccgatgcttg cagagatctt tgaaaaggtt gcagcaaaag 3480 aaaaaaggga gtttcagtct gtgcttggtc tttcatatca attcctggat atggaaaaga 3540 atgggtgcaa aatagacata ctgccttttg ctcgtcaaaa cgtctttcca catcatcaat 3600 cttcagatga tgtcaccttt tgggcaggtg ttcagaaaag aatcagaaaa tcaaattgga 3660 ggagggaaaa gtcaaaattt gaagaatttg aaagtcaggg gaaagaatta ctctctgaat 3720 ttttgtcaat gctgccattc gagtttaaag tgaacatcaa ggacattgaa aatggggaaa 3780 agagctttct ggagaaaagg aaactaaagt ctgaaaagat gtgggccaat cattcagaaa 3840 ggtctgacat tgactggaaa ctngaccatg ttttcctctt catgaaatct caatactgca 3900 ccaaggaagg taaaatgttc actgaagcaa aagctggtca aaccttagct tgtttccagc 3960 acattgtcct ttttcgattt ggtcccatgt tgagggcaat tgaaagtgct tttcttagaa 4020 gctgcgggga ttcatattat atacactcag gaaagaattt tttttgtctg gacagctttg 4080 tgaccaagaa tgcaagtgtt tttgatggat tttcaattga gtccgactac acggcctttg 4140 attcatctca agaccacgtt atcttggctt ttgagatggc attactacag tatttgggcg 4200 tgtcaaagga gtttcaactg gattacctta gattgaaatt gacccttggg tacaggcttg 4260 ggtccttagc cataatgaga tttacagggg agctctgtac ttttctgttt aacacatttg 4320 ccaatatgct tttcactcag ctgaagtata aaatagatcc aaggaaacac agaattctgt 4380 tcgctgggga tgatatgtgt tcattgagct ctctcaagag aaggagaggg gagagggcca 4440 caagactgtt gaagagtttt tctctcactg ctgtggagga agtaagaaaa tttccaatgt 4500 tctgtgggtg gtacttgagc ccttatggca tcatcaagtc tccaaaactg ctttgggcaa 4560 gaatcaagat gatgagtgaa agacagcttc tcaaggagtg tgtagataat tacttgtttg 4620 aagcaatatt tgcctacaga ttaggtgaga ggctttacac aattctgaaa gaagaggatt 4680 ttgaatacca ctaccttgta attaggtttt ttgtcaaaaa ttcaaagtta ctgactggtt 4740 tgagcaagag ccttatattt gaaattgggg aaggtattgg agcagaatgg ctatcgtcaa 4800 tgtcaaccat ttcctcaagg aggtcgagtc aactgacctc aaaattgacg ccatctcctc 4860 atctgaactg tacaaagatg caaccttttt taagccaaac gtactcaact gcattaaaag 4920 gtttgagtca aatgtcaaag tttcttcaag gtcaggggat ggactcgtgc tgtctgattt 4980 taaactcctt gatgacactg agattgactc cattagaaag aaaagtaaca aatacaaata 5040 tttacactat ggagtcatct tggtgggaat caaagccaag ctgcctaact ttagaggaat 5100 ggaagggaga gtcatcgtat atgacggggc ttgtctggac ccagaaaggg gtcacatctg 5160 ttcttatctg ttcaaatttg agtccgattg ttgttacttt ggactcagac ctgagcactg 5220 tctttcaaca actgatgcaa atttggccaa aagatttagg ttcagagtgg attttgattg 5280 tccacaatat gaacaggaca cggaactgtt tgctcttgac attggggtcg cataccgatg 5340 tgtcaactca gcaaggttcc ttgaaaccaa aactggtgat tcagggtggg cttcacaggc 5400 tatcagcggc tgcgaggcac tcaagttcaa cgaagaaatt aagttggcca tcttggatca 5460 caaatccccg ctgtttctgg aggagggtgc accaaatgtg catgttgaaa agagactatt 5520 taggggcgac aaagttcgaa gatcgcgctc aatttctgct aaaagagggc caaactcaaa 5580 gctgcaggaa aagagaggat ttaggtccct ctcagctaga atcgaaagat ttggagaaaa 5640 tgagtttgga agacgtgctt caacaagcga gacgccaccg ggtaggagta tatctctgga 5700 agactcacat agacccggca aaggaacttc tgacggttcc tccccctgaa ggattcaaag 5760 aaggtgaaag ctttggaggc agagagcttt accttcttct ctgcaatcac tattgtaaat 5820 atttatttgg taatattgct gtttttgggt cttctgataa gacccagttt cccgctgtcg 5880 gttttgatac tccaccagtt cattacagcc tgacaacgac cccaaaaaaa ggggaaactg 5940 aagaagagaa gaaagccaga gaagggtcgt ctggtgaaaa aactaagatt tggaggatcg 6000 acttgtcaaa tgttgtccct gagttgaaaa cctttgctgc tacttctcgg cataactctc 6060 tgaacgaatg tacgtttcgg aagctttgtg agccttttgc tgatttggct cgtgaatttc 6120 ttcatgaacg gtggtccaaa ggtttggcca ccaacatata caagaaatgg cccaaagctt 6180 ttgagaaaag cccatgggtg gcatttgatt ttgccaccgg tctaaaaatg aatcgtctga 6240 cacctgatga aaaacaggtg attgacagaa tgaccaagag gctttttcgt actgaaggac 6300 agaaaggggt ttttgaggca ggttcggaga gtaacttgga actggagggt taggagtcgt 6360 ttaaaattcc gcaaacttgg tcgcggtctt gcaggttgac atgcctgcct ttatacttaa 6420 ataaagggtt cccccggttt tctgtgaatt tccgggttag tgtggttttt ctagagtcta 6480 gagtttgtcc actcta 6496 //