ID   FJ346232; SV 1; linear; genomic DNA; STD; VRL; 1177 BP.
XX
AC   FJ346232;
XX
DT   31-OCT-2008 (Rel. 97, Created)
DT   27-JUN-2010 (Rel. 105, Last updated, Version 3)
XX
DE   Jatropha mosaic India virus-[Lucknow] strain 1 segment DNA A AV1 gene,
DE   partial cds; AC3 and AC2 genes, complete cds; and AC1 gene, partial cds.
XX
KW   .
XX
OS   Jatropha mosaic India virus-[Lucknow]
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-1177
RX   DOI; 10.1007/s00425-010-1159-0.
RX   PUBMED; 20372923.
RA   Sidhu O.P., Annarao S., Pathre U., Snehi S.K., Raj S.K., Roy R., Tuli R.,
RA   Khetrapal C.L.;
RT   "Metabolic and histopathological alterations of Jatropha mosaic
RT   begomovirus-infected Jatropha curcas L. by HR-MAS NMR spectroscopy and
RT   magnetic resonance imaging";
RL   Planta 232(1):85-93(2010).
XX
RN   [2]
RP   1-1177
RA   Raj S.K., Snehi S.K., Sidhu O.P., Pathre U.;
RT   ;
RL   Submitted (01-OCT-2008) to the INSDC.
RL   Plant Molecular Virology, National Botanical Research Institute, Lucknow,
RL   U. P. 226001, India
XX
DR   MD5; 2931f94703a8d74eac01bc20da284147.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1177
FT                   /organism="Jatropha mosaic India virus-[Lucknow]"
FT                   /segment="DNA A"
FT                   /host="Jatropha curcas L."
FT                   /strain="1"
FT                   /isolate="Lucknow"
FT                   /mol_type="genomic DNA"
FT                   /country="India"
FT                   /db_xref="taxon:569949"
FT   CDS             <1..357
FT                   /codon_start=1
FT                   /product="AV1"
FT                   /note="coat protein; involved in encapsidation of virion"
FT                   /db_xref="GOA:B6V8S2"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:B6V8S2"
FT                   /protein_id="ACJ02104.1"
FT                   /translation="LVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNMYRDRYQVLRKWS
FT                   STVTGGQYASKEQAIVRRFFRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYA
FT                   TLKIRIYFYDSVSN"
FT   CDS             complement(354..758)
FT                   /codon_start=1
FT                   /product="AC3"
FT                   /note="REn protein; increases viral replication"
FT                   /db_xref="GOA:B6V8S3"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:B6V8S3"
FT                   /protein_id="ACJ02105.1"
FT                   /translation="MDSRTGELITAAQAMNGVYTWEVPNPLYFKIIDHSSRPFLMEHDI
FT                   ITVQIRFNHNLRKALGLHQCWMDFKIWTTLRPQTLRFLRVFKTHVLKYLDMLGVICINT
FT                   VLTAVEHVLYSVLTGTDSIEQSNLIKFKIY"
FT   CDS             complement(499..906)
FT                   /codon_start=1
FT                   /product="AC2"
FT                   /note="TrAP protein; transcriptional activator for virus
FT                   sense genes"
FT                   /db_xref="GOA:B6V8S4"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:B6V8S4"
FT                   /protein_id="ACJ02106.1"
FT                   /translation="MRPSSPSTGHSTPVPIKVQHRAAKRRAIRRRRVDLNCGCSYYVHI
FT                   NCHNHGFTHRGTHHCSSGDEWRLYLGGSKSPLFQDHRPQQPAVPDGTRHNNRPDTVQPQ
FT                   PEESVGTTSMLDGFQNLDDLTASDLAFLEGI"
FT   CDS             complement(836..>1177)
FT                   /codon_start=1
FT                   /product="AC1"
FT                   /note="replication-associated protein"
FT                   /db_xref="GOA:B6V8S5"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="UniProtKB/TrEMBL:B6V8S5"
FT                   /protein_id="ACJ02107.1"
FT                   /translation="LCGHLDLSPRVYSNDAWYNVIDDVDPHYLKHFKEFMGAQKDWQSN
FT                   TKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEPKNTALKAWAIRNATFISLDGPLYSS
FT                   ADQGSTQGS"
XX
SQ   Sequence 1177 BP; 281 A; 263 C; 298 G; 335 T; 0 other;
     ctcgtcaggg atcgtaggcc cgtggacaaa ccccaggatt ttggtgaggt gttcaacatg        60
     ttcgataacg agcccagtac tgctacggtt aaaaacatgt accgtgatcg gtaccaggtg       120
     ttaaggaagt ggagttccac tgtcactggt ggtcagtatg cgagcaaaga gcaggcaata       180
     gttaggcgtt tttttagggt taataattat gttgtgtata atcagcaaga ggctggtaag       240
     tacgaaaacc atacggagaa tgcattgatg ctgtacatgg cgtgtactca cgcctctaac       300
     cccgtgtatg ctacgcttaa gatacggatc tacttctacg attcagtatc caattaataa       360
     attttaaatt ttattaaatt tgactgctca atactgtcag tccctgtgag tacactgtac       420
     aatacatgtt ctacggcggt taaaaccgta tttatacata tgacccctaa catgtccagg       480
     tatttgagta cgtgggtctt aaataccctc aagaaacgca aggtctgagg ccgtaaggtc       540
     gtccagattt tgaaatccat ccagcattga tgtagtccca acgctttcct caggttgtgg       600
     ttgaaccgta tctggacggt tattatgtcg tgttccatca ggaacggccg gctgctgtgg       660
     tctatgatct tgaaatagag gggatttgga acctcccagg tatagacgcc attcatcgcc       720
     tgagctgcag tgatgagttc ccctgtgcgt gaatccatgg ttgtggcagt tgatgtgcac       780
     gtagtacgag cacccgcagt tgaggtctac tctccgtcgc cggatggccc tacgcttagc       840
     tgccctgtgt tgaaccttga tcggcactgg agtagagtgg cccgtcgagg gagatgaagg       900
     tcgcatttct tattgcccaa gccttcaatg ccgtattctt cggctcgtca aggaactctt       960
     tatagctgga attgggccca ggattgcaca ggaagatagt gggtatccca cctttaattt      1020
     gaaccggctt tccgtatttg gtgttgcttt gccagtcctt ctgggccccc atgaattcct      1080
     tgaagtgctt taggtagtgg ggatctacgt catcaatgac gttgtaccac gcgtcgttgc      1140
     tgtagaccct aggactcaag tccagatgtc cacatag                               1177
//