ID FJ345401; SV 1; circular; genomic DNA; STD; VRL; 2761 BP. XX AC FJ345401; XX DT 03-NOV-2008 (Rel. 97, Created) DT 03-MAR-2009 (Rel. 100, Last updated, Version 2) XX DE Tomato leaf curl Joydebpur virus-[India:Amadalavalasa2:Kenaf:2007] clone DE LC-Ama2 segment DNA-A, complete sequence. XX KW . XX OS Tomato leaf curl Joydebpur virus-[India:Amadalavalasa2:Kenaf:2007] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2761 RA Paul S., Ghosh R., Das S., Chaudhuri S., Ghosh S.K., Roy A.; RT "Molecular epidemiology and biodiversity of the begomovirus complex RT associated with leaf curl disease of kenaf in India"; RL Unpublished. XX RN [2] RP 1-2761 RA Paul S., Ghosh R., Das S., Chaudhuri S., Ghosh S.K., Roy A.; RT ; RL Submitted (26-SEP-2008) to the INSDC. RL Crop Protection, Central Research Institute for Jute and Allied Fibres, RL Barrackpore, Kolkata, West Bengal 700 120, India XX DR MD5; b7ceae658c267d6b4bad370efff38d95. XX FH Key Location/Qualifiers FH FT source 1..2761 FT /organism="Tomato leaf curl Joydebpur FT virus-[India:Amadalavalasa2:Kenaf:2007]" FT /segment="DNA-A" FT /host="Hibiscus cannabinus" FT /mol_type="genomic DNA" FT /country="India:South India, Amadalavalasa" FT /collection_date="2007" FT /clone="LC-Ama2" FT /db_xref="taxon:614077" FT gene 146..511 FT /gene="AV2" FT CDS 146..511 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:B6V8L7" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:B6V8L7" FT /protein_id="ACJ03815.1" FT /translation="MWDPLVNDFPETAHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL FT ISVIRARNYVEATSRYNHFHARLEGTPPSQLRQPICQPCCCPHCPRHQSKSMGEQAHEQ FT EAQNVSDVQKSGCSKGM" FT gene 306..1079 FT /gene="AV1" FT CDS 306..1076 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:B6V8L8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:B6V8L8" FT /protein_id="ACJ03816.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVQHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT SVNALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1073..1477) FT /gene="AC3" FT CDS complement(1073..1477) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /db_xref="GOA:B6V8L9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:B6V8L9" FT /protein_id="ACJ03817.1" FT /translation="MDSRTGEPITAAQAENGVFIWEITNPLYFKITEHHHRPFLMNHDI FT ITVQVQFNHNLRKALAIHKCFLNFRIWTTLQPRTGHFLRVFRTQVLQFLNNFAVISINN FT VIRAVDHVLWNVLAHTIYVQSSNIIKFNIY" FT gene complement(1218..1622) FT /gene="AC2" FT CDS complement(1218..1622) FT /codon_start=1 FT /gene="AC2" FT /product="transcription activator protein" FT /db_xref="GOA:B6V8M0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:B6V8M0" FT /protein_id="ACJ03818.1" FT /translation="MRPSSPSKAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR FT CHGYGFTHRGTHHCSSGREWRVYLGDNKSPVFQDNRAPPPAIPNEPRHHNSPSTVQSQP FT EESVGDTQMFSKLPNLDDLTASDWSFLKGI" FT gene complement(1525..2610) FT /gene="AC1" FT CDS complement(1525..2610) FT /codon_start=1 FT /gene="AC1" FT /product="replication initiator protein" FT /db_xref="GOA:B6V8M1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B6V8M1" FT /protein_id="ACJ03819.1" FT /translation="MAPPNKFRINAKNYFLTYPKCSLTKEEALSQLKNLETPVNKLFIR FT VCRELHENGEPHLHVLLQFEGKFQCKNNRFFDLVSPTRSAHFHPNIQGAKSSTDVKAYV FT EKDGDFIDFGVFQIDGRSARGGQQSANDAYAEAINSGSKAAALTILREKAPKDYVLQFH FT NLNSNLDRIFTPPPEVYISPFSSSSFDQVPVELEEWAAENVVGAAARPLRPISIVLEGD FT SRTGKTVWARSLGPHNYLCGHLDSSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDR FT QSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKNWALKNATFITLEGPL FT YSGSNQSAAQASEEGDQASTR" FT gene complement(2160..2453) FT /gene="AC4" FT CDS complement(2160..2453) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:B6V8M2" FT /protein_id="ACJ03820.1" FT /translation="MGNLIYTCSSNLRENSNAKITDSSTSFPQPGQHISIRTFRELRAL FT QMSKPMWRKTETSLILEFSRSMADLLEEVSNLPTTHMPRQSIQGPKLRPSLF" XX SQ Sequence 2761 BP; 742 A; 581 C; 640 G; 798 T; 0 other; accggatggc cgcgattttt ttcaagtggg ccccacaacg cacgtgctga caaggacaat 60 tggaccaatt agaaacgccg ctcaaagctt aattatttcg tggtccccta tataaacttg 120 gtccccaagt agtgcactca taccaatgtg ggatccgtta gtaaacgact ttcctgaaac 180 cgctcacggt tttaggtgta tgctagccgt taaatatctt cagctagtag aaaagacgta 240 ttctccagac actctcgggt acgatttaat ccgggattta atttcagtca tcagggctag 300 aaattatgtc gaagcgacca gcagatataa tcatttccac gcccgcctcg aaggtacgcc 360 gccgtctcaa cttcgacagc ccatatgcca gccgtgctgc tgcccccatt gtccgcgtca 420 ccaaagcaaa agcatgggcg aacaggccca tgaacaggaa gcccagaatg tatcggatgt 480 acagaagtcc ggatgttcca aggggatgtg aaggcccttg taaggtccag tcttttgagt 540 ctcgacatga tgtccaacac ataggtaaag tcatgtgtgt tagtgatgtt actcgtggaa 600 ctgggctgac ccatcgagtt ggtaaaaggt tttgtgttaa gtccgtctat gttctgggca 660 agatttggat ggatgagaac atcaagacta agaatcacac gaatagtgtt atgtttttcc 720 ttgttagaga tcgtaggccc gttgataagc cccaagactt tggtgaggta ttcaatatgt 780 ttgataatga gcccagtacg gcgactgtga aaaacgtgca tcgtgacagg tatcaggtgc 840 tgaggaagtg gcatgcaact gtgactggtg gtcaatatgc atcgaaggag caagcactcg 900 tgaagaagtt tattagggtt aacaattatg ttgtgtataa ccagcaagag gctggcaagt 960 atgaaaacca tagtgtgaat gcattaatgt tgtatatggc gtgtactcat gcctctaacc 1020 ctgtgtatgc tacgttgaag atacggatct atttctatga ctccgtaaca aattaataaa 1080 tattgaattt tattatgttt gaactttgta cataaattgt atgcgctaat acattccata 1140 atacatgatc gactgctcta attacattgt ttatactaat tacagcaaaa ttatttaaaa 1200 actgcaacac ttgggtccta aataccctta agaaatgacc agtccgaggc tgtaaggtcg 1260 tccagattcg gaagtttaga aaacatttgt gtatcgccaa cgctttcctc aggttgtgat 1320 tgaactgtac ttggactgtt atgatgtcgt ggttcattag gaatggccgg tggtggtgct 1380 cggttatctt gaaatacagg ggatttgtta tctcccagat aaacacgcca ttctcggcct 1440 gagctgcagt gatgggttcc cctgtgcgtg aatccatagc cgtggcagcg taatgcgatg 1500 aaatatgaac agccgcagtc caggtcaacg cgtcgacgcc tggtcccctt cttcgctagc 1560 ctgtgctgca ctttgattgg aacctgagta gagtgggcct tcgagggtga tgaaggtcgc 1620 attctttaaa gcccaatttt tgagtgcgga attcttctcc tcatccaaga actctttata 1680 gctggaattg ggtcctggat tgcagaggaa gatagcggga attccacctt taatttgaac 1740 tggctttccg tattttgtat ttgattgccg gtccctttgg gcccccatga attccttaaa 1800 gtgtttcagg tagtggggat cgacgtcatc aatgacgttg taccaggcgt cattactgta 1860 gaccttaggg ctagaatcta gatgaccaca cagatagtta tgtggaccca aagacctagc 1920 ccacacagtc ttccccgtcc tactatcacc ctctaacaca atacttatgg gtctcaaagg 1980 ccgcgcagcg gcaccaacga cgttctccgc agcccattcc tcaagttcaa ctggaacttg 2040 atcaaaagaa gaggaagaaa aaggagaaat ataaacctcc ggtggaggtg taaaaatcct 2100 atctaaatta ctatttaaat tatgaaactg taaaacataa tctttgggag ctttctccct 2160 taaaatagtg agggccgcag ctttggaccc tgaattgatt gcctcggcat atgcgtcgtt 2220 ggcagattgc tgacctcctc tagcagatct gccatcgatc tggaaaactc caaaatcaat 2280 gaagtctccg tctttctcca cataggcttt gacatctgta gagctcttag ctccctgaat 2340 gttcggatgg aaatgtgctg accgggttgg ggaaacgagg tcgaagaatc ggttattttt 2400 gcattggaat tttccctcaa attggaggag cacgtgtaga tgaggttccc cattttcgtg 2460 tagttctctg caaaccctaa taaataattt atttactgga gtttctaagt ttttcaattg 2520 ggaaagtgcc tcttctttag taagagagca cttgggatat gtgaggaaat aatttttggc 2580 atttattctg aatttatttg gaggagccat tgacttggtc aatcggtgtc cagcgaactt 2640 ggctatgcaa ttggtgtctg gtgtcttatt tatatgcaga caccgaatgg catatgtgta 2700 atttgttaac ttactttaat tcaaatttca aaatgcccaa agcggccatc cgtctaatat 2760 t 2761 //