ID FJ268744; SV 1; linear; genomic RNA; STD; VRL; 3356 BP. XX AC FJ268744; XX DT 03-NOV-2008 (Rel. 97, Created) DT 03-NOV-2008 (Rel. 97, Last updated, Version 1) XX DE Cucumber mosaic virus isolate Cah1 segment RNA1, complete sequence. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3356 RA Wang H., Chen J., Du Z.; RT "Complete Sequence and Pathogenicity Analysis of Cucumber mosaic virus Cah1 RT isolate"; RL Unpublished. XX RN [2] RP 1-3356 RA Wang H., Du Z., Chen J.; RT ; RL Submitted (30-SEP-2008) to the INSDC. RL Zhejiang Sci-Tech University, Institute of Bioengineering, Xiasha Road 2, RL Hangzhou, Zhejiang 310018, China XX DR MD5; 7e1a187395b3a1d4e1cfc6090a1baa58. DR RFAM; RF01084; TLS-PK3. XX CC GenBank Accession Numbers FJ268744-FJ268746 represent the complete CC genome of Cucumber mosaic virus isolate Cah1. XX FH Key Location/Qualifiers FH FT source 1..3356 FT /organism="Cucumber mosaic virus" FT /segment="RNA1" FT /host="Canna sp." FT /isolate="Cah1" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="May-2007" FT /db_xref="taxon:12305" FT CDS 95..3076 FT /codon_start=1 FT /product="1a protein" FT /db_xref="GOA:B6V8E7" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR021002" FT /db_xref="InterPro:IPR022184" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B6V8E7" FT /protein_id="ACJ04712.1" FT /translation="MATSSFNINELVASHGDKGLLATALVDKTAHEQLEEQLQHQRRGR FT KVYIRNVLGVKDSEVIRNRYGGKYDLHLTQQEFAPHGLAGALRLCETLDCLDSFPSSGL FT RQDLVLDFGGSWVTHYLRGHNVHCCSPCLGIRDKMRHAERLMNMRKIILNDPQQFDGRQ FT PDFCTYPAADCKVQAHFAISIHGGYDMGFRGLCEAMNAHGTTILKGTMMFDGAMMFDDQ FT GVIPELNCQWRKIRSAFSETEDVTPLSGKLNSTIFSHVRKFKTMVAFDFINESTMSYVH FT DWENIKSFLTDQTYSYREMTYGIERCVIHAGIMTYKIIGVPGMCPPELIRHCIWFPSIK FT DYVGLKIPASQDLVEWKTVRILTSTLRETEEIAMRCYNDKKARMEQFKVILGVLSAKSS FT TIVINGMSMQSGERIDINDYHYIGFAILLHTKMKYEQLGKMYDMWNASSISKWFAALTR FT PLRVFFSSVVHALFPTLRPREEKEFLIKLSTFVTFNEECSFDGGEEWDVISSAAYVATQ FT AVTDGKILAAQKAEKLAEKLAQPVIEVSDRPEAPSSTPDDTADVCGKEQEVSELDSLSA FT QTRSPITRVAERATAMLEYAAYEKQLHDTTVSNLKRIWNMAGGDDKRNSLEGNLKFVFD FT TYFTVDPMVNIHFSTGRWMRPVPEGIVYSVGFNERGLGPKSDGELYIVNSECVICNSES FT LSTVTRSLQAPTGTISQVDGVAGCGKTTAIKSIFEPSTDMIVTANKKSAQDVRMALFKS FT SDSKEACTFVRTADSVLLNECPTVSRVLVDEVVLLHFGQLCAVMSKLKAVRAVCFGDSE FT QIAFSSRDASFDMRFSKIIPDETSDADTTFRSPQDVVPLVRLMATKALPKGTHSKYTKW FT VSQSKVKRSVTSRAIASVTLVDLDSSRFYITMTQADKASLISRAKEMNLLKTFWNERIK FT TVHESQGISEDHVTLVRLKSTKCDLFKQFSYCLVALTRHKGTFRYEHCGVLNGDLIAEC FT IARA" XX SQ Sequence 3356 BP; 832 A; 738 C; 819 G; 967 T; 0 other; gtttatttac aagagcgtac ggttcaatcc ctgcctcccc tgtaaaacta ccctttgaaa 60 acctctcttt cttaatcttt tctctgaaat tcctatggcg acgtcctcgt tcaacatcaa 120 tgaattggta gcctcccacg gcgataaagg actgctcgcg accgccctcg ttgataagac 180 agctcatgag cagctcgagg agcaattaca gcatcaacgt agaggccgta aggtctacat 240 ccggaacgtt ctgggtgtaa aggattccga ggtcatccgg aatcggtatg gagggaagta 300 cgacctccat cttacccagc aggagtttgc tccccacggc ctagctggtg ccctccgctt 360 gtgtgaaact ctcgattgtc tagactcttt cccttcttca ggtctgcggc aggacctcgt 420 cttagacttc ggaggaagtt gggtcacaca ttacctccgc ggacataacg tacactgctg 480 ttccccttgt ttgggtattc gcgataaaat gcgccacgcg gaacgtttaa tgaacatgcg 540 caagatcatt ttgaacgatc cacaacagtt cgatggtcga cagccggatt tctgcactta 600 cccggctgcg gattgcaaag tacaagccca ctttgctata tctattcatg gaggttatga 660 tatgggcttc agaggacttt gtgaagcgat gaatgctcac ggaaccacta ttttgaaggg 720 aacgatgatg ttcgatggtg cgatgatgtt tgacgaccaa ggtgtaatac ctgaacttaa 780 ctgccagtgg agaaagatca ggagtgcttt ctctgaaact gaggacgtca cgccgctgtc 840 tggaaaactt aattccacaa tattttccca cgtgcgtaaa ttcaagacca tggtggcttt 900 tgattttatc aatgagtcta ctatgtctta tgttcatgat tgggagaata taaaatcttt 960 tcttacagac cagacctact cgtaccgcga gatgacttac ggtattgagc gttgcgttat 1020 tcacgccggc attatgacgt acaagatcat tggtgtacct gggatgtgtc cacccgaact 1080 cattcgacat tgcatttggt tcccctctat taaggactat gttggtctaa agattcccgc 1140 gtcgcaggac ttggtcgaat ggaaaacagt gcgtatttta acgtcaacat tacgtgagac 1200 ggaggagatt gctatgaggt gttacaatga caagaaagcg cggatggaac aatttaaggt 1260 catcttaggt gttctatctg caaaatcatc taccattgtc atcaatggta tgtccatgca 1320 atctggcgag cgtatcgaca ttaacgatta tcattatatc ggtttcgcca ttctcctcca 1380 cacaaaaatg aagtatgaac agttgggaaa aatgtacgat atgtggaatg cttcgagtat 1440 ctcgaagtgg tttgcggcgt tgactcgtcc gttgcgcgtg tttttctcca gcgttgttca 1500 cgcattgttt ccgactttga gaccgcgcga ggaaaaagaa ttcctgatta agctctccac 1560 ctttgtaact tttaatgaag agtgctcatt tgacggtgga gaggaatggg acgtgatatc 1620 atctgctgca tacgttgcta cgcaggctgt taccgatggg aaaattttgg ctgcacagaa 1680 agccgagaag ctcgctgaga agcttgcaca acccgtgatt gaggtatcgg acagacctga 1740 ggcgccatct tcaacgcctg atgatactgc tgatgtttgt ggaaaggagc aagaggtctc 1800 ggaacttgac tccttatcag cccagacacg ttcccccatc actagagttg ctgagagggc 1860 tactgctatg ttagagtatg ccgcttatga gaaacagtta catgacacta cagtgtctaa 1920 tctgaagcgt atttggaata tggcgggtgg tgatgacaag agaaactccc tcgagggtaa 1980 tttgaagttt gtttttgaca cgtattttac tgttgatccc atggtgaaca ttcacttctc 2040 cacgggtcgg tggatgcgtc ctgtgcctga gggaattgtt tactctgttg gttttaatga 2100 acgcgggtta ggtcctaagt ctgatgggga gctttacatt gttaatagtg agtgcgtgat 2160 ttgtaacagt gagtctttat ctactgtcac tcgctcgctt caggccccaa ctggaactat 2220 tagtcaagtc gacggagttg caggttgtgg gaagaccaca gcaataaaat caatttttga 2280 gccgtccact gacatgatcg ttaccgcgaa caagaaatcc gcccaagacg ttcgaatggc 2340 actctttaaa tcttcagatt ccaaggaagc ttgcaccttc gttcgtactg ccgattctgt 2400 cctacttaat gaatgtccaa ctgttagtag ggttttggtc gatgaagttg tgctacttca 2460 ctttggtcaa ttgtgtgctg tcatgtccaa gctaaaggct gtgcgagccg tatgtttcgg 2520 ggattctgag cagattgctt tttcttctcg cgatgcttcg tttgacatgc gtttctctaa 2580 gattattcct gatgaaacta gtgatgcgga taccacattc cgtagcccac aagatgttgt 2640 gccgcttgtg cgtctaatgg ctacgaaggc tcttccgaaa ggaactcatt cgaaatacac 2700 taaatgggtt tctcaatcta aagtgaaaag atctgttacg tctcgtgcta ttgccagtgt 2760 gacattggtt gatttggatt cttccaggtt ttatatcacg atgactcagg ctgacaaggc 2820 ttcactgatt tcaagagcga aagagatgaa cttactgaag actttctgga atgaaaggat 2880 taagactgtg catgagtctc agggtatttc tgaagaccac gttactttgg taagattgaa 2940 gagcacaaaa tgtgacctgt ttaaacagtt ttcgtattgt cttgttgcct tgacgagaca 3000 caagggcact ttccgctatg agcattgtgg tgtgttaaac ggcgatttaa tcgccgaatg 3060 tattgctcgt gcttagcggt ttccctcctt cgggcgggat ctgagttggc ggtaatctac 3120 aaaccgtctg aagtcactaa acgctttgcg gtgaacgggt tgtccatcca gcttacggct 3180 aaaatggtca gtcgtggaga aatccacgcc agtagactta caagtctctg aggtgccttt 3240 gaaaccatct cctaggtttc ttcggaagga cttcggtccg tgtacttcta gcacaaggtg 3300 ctagtttcag ggtacgggca tccccccatt ttatgggggc ctccaaaagg agacca 3356 //