ID   FJ263365; SV 1; linear; genomic RNA; STD; VRL; 1915 BP.
XX
AC   FJ263365;
XX
DT   02-OCT-2009 (Rel. 102, Created)
DT   18-NOV-2009 (Rel. 102, Last updated, Version 2)
XX
DE   Pepino mosaic virus isolate PMU08/48 triple gene block protein 1 (TGBp1)
DE   gene, complete cds; nonfunctional triple gene block protein 2 (TGBp2) gene,
DE   complete sequence; and triple gene block protein 3 (TGBp3) and capsid
DE   protein (CP) genes, complete cds.
XX
KW   .
XX
OS   Pepino mosaic virus
OC   Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus.
XX
RN   [1]
RP   1-1915
RX   DOI; 10.1128/JVI.01486-09.
RX   PUBMED; 19759144.
RA   Gomez P., Sempere R.N., Elena S.F., Aranda M.A.;
RT   "Mixed infections of Pepino mosaic virus strains modulate the evolutionary
RT   dynamics of this emergent virus";
RL   J. Virol. 83(23):12378-12387(2009).
XX
RN   [2]
RP   1-1915
RA   Gomez P., Sempere R.N., Elena S.F., Aranda M.A.;
RT   ;
RL   Submitted (29-SEP-2008) to the INSDC.
RL   Dpto Biologia del Estres y Patologia Vegetal, Centro de Edafologia y
RL   Biologia Aplicada del Segura (CEBAS)-CSIC, Campus de Espinardo, Espinardo,
RL   Murcia Apdo. Correos 164 30100, Spain
XX
DR   MD5; 61bdaf81cf7b43a3c474e8dd4604405b.
DR   EuropePMC; PMC2786733; 19759144.
DR   EuropePMC; PMC3132167; 21702943.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1915
FT                   /organism="Pepino mosaic virus"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="PMU08/48"
FT                   /mol_type="genomic RNA"
FT                   /country="Spain"
FT                   /collection_date="Apr-2008"
FT                   /note="CH2 type acronym: PepMV"
FT                   /db_xref="taxon:112229"
FT   gene            1..705
FT                   /gene="TGBp1"
FT   CDS             1..705
FT                   /codon_start=1
FT                   /gene="TGBp1"
FT                   /product="triple gene block protein 1"
FT                   /db_xref="GOA:C9WC95"
FT                   /db_xref="InterPro:IPR027351"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:C9WC95"
FT                   /protein_id="ACO59453.1"
FT                   /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA
FT                   YPSLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC
FT                   TYIERLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKAQDDTVEYFDPFAVDPSEHV
FT                   SASEKEVLEFVGDQVETTSSEELAGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK
FT                   LTIGELNARSDS"
FT   gene            686..1056
FT                   /gene="TGBp2"
FT   misc_feature    686..1056
FT                   /gene="TGBp2"
FT                   /note="nonfunctional triple gene block protein 2 due to
FT                   mutation"
FT   gene            908..1156
FT                   /gene="TGBp3"
FT   CDS             908..1156
FT                   /codon_start=1
FT                   /gene="TGBp3"
FT                   /product="triple gene block protein 3"
FT                   /db_xref="GOA:C9WC96"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:C9WC96"
FT                   /protein_id="ACO59454.1"
FT                   /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC
FT                   QVIIDGAAIVITNCPNTPEVLKAINFSPWNVLSFPQL"
FT   gene            1202..1915
FT                   /gene="CP"
FT   CDS             1202..1915
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="capsid protein"
FT                   /db_xref="GOA:Q2UVL7"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProtKB/TrEMBL:Q2UVL7"
FT                   /protein_id="ACO59455.1"
FT                   /translation="MENQPTASNPSDVPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY
FT                   VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT                   PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD
FT                   FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT                   GGANTMYAIDAPPEL"
XX
SQ   Sequence 1915 BP; 560 A; 470 C; 338 G; 547 T; 0 other;
     atggaaagat caactttgat caatttactt ctgttacaca aatttgaaca caagattaac        60
     actgaaggaa tcattgttgt gcacggaatt gctggaactg ggaaaaccac attgcttagg       120
     actttatttt ctgcttaccc tagcttagtt ataggttcac ctaggccttg ttacttagat       180
     aaagctaata aaatttcaca agtttgcctt tcttgttttc caaatacctt gtgtgacatt       240
     gttgacgagt accatctctt agaaagtttt cctgaaccaa aactagccat ttttggtgac       300
     ccctgtcagt gcacttacat tgaaaggttg agaacaccca actacacatc cttcagaaca       360
     caccgatttg gcaaatccac tgctgctcta ctaaacaagt tatttgatct taacattgag       420
     tcagtcaaag cacaagacga cacagtagaa tactttgatc ctttcgcagt ggacccctct       480
     gaacacgttt ctgcttcaga aaaagaagtt ttggaatttg taggtgatca agttgagact       540
     acaagctctg aagaactagc tggtctcgag tttagtgaag ttactttcta ctgtaccaca       600
     cttgctggtg ctgttcaaga aaatcctgcc aaaaccttca tttcactcac cagacacact       660
     tcaaagctca caattggtga actaaatgcc aggtctgact cctagagctg atcttactga       720
     cacgtataaa atcattgcta tagcctttct actgtcagct tgcatttact tccaaacagt       780
     cattatcaac cagttacagg tgataatttg cacagactac cctttggtgg tcagtatcaa       840
     gacggaacta agaagatctc ttactttccg cagcaacaat cctactttca ctcaggaaac       900
     aagcttaatg tcctcatact tatcttcatt cttacactgg gtattgtcct caccaataaa       960
     tttagtttta gcattagccg taatactcac cagcatcatt gctacaacac acattctgca      1020
     acccaagcag gtcaatcagt gccaggtcat cattgatggt gcagccatag tcataacaaa      1080
     ttgtccaaac acacccgaag ttcttaaagc aatcaacttc tccccttgga acgtgttaag      1140
     ttttcctcaa ttgtgaaatc atatttgtta tctagttaaa ttcaaacaat ttaactcaac      1200
     tatggaaaac caacctacag cttctaaccc atcagatgta ccaccaactg ctgctcaagc      1260
     tggtgcccag agcccagccg acttctcaaa tcctaataca gctccttccc taagtgattt      1320
     gaagaagatc aaatacgtgt caactgtcac ttcagttgcc acgcctgctg aaattgaagc      1380
     ccttggcaag atctttactg ccatgggttt agcagccaat gagaccggac ctgccatgtg      1440
     ggacctcgct cgtgcttatg ctgatgtgca aagttcaaaa tctgcacaac ttataggtgc      1500
     cacaccatcc aaccctgctt tgtctagacg tgcacttgct gcacagtttg atcgtatcaa      1560
     tatcacaccc agacaattct gcatgtattt tgcaaaaatt gtttggaaca tactgttaga      1620
     cagcaatgtg ccacctgcca actgggcaaa attgggctat caggaagata ccaagtttgc      1680
     tgcttttgac ttctttgatg gagtcacaaa cccagctagt ctacagcctg cagatggcct      1740
     aattaggcag cccaatgaaa aagagcttgc tgctcactcg gttgctaaat atggtgccct      1800
     tgcccgccag aaaatatcca ctggtaacta catcaccacc cttggtgaag ttacacgtgg      1860
     tcacatgggc ggcgccaaca ctatgtacgc aattgatgca cctcctgaac tttaa           1915
//