Dbfetch
ID FJ263362; SV 1; linear; genomic RNA; STD; VRL; 1916 BP. XX AC FJ263362; XX DT 02-OCT-2009 (Rel. 102, Created) DT 18-NOV-2009 (Rel. 102, Last updated, Version 2) XX DE Pepino mosaic virus isolate PMU08/44 triple gene block protein 1 (TGBp1), DE triple gene block protein 2 (TGBp2), triple gene block protein 3 (TGBp3), DE and capsid protein (CP) genes, complete cds. XX KW . XX OS Pepino mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-1916 RX DOI; 10.1128/JVI.01486-09. RX PUBMED; 19759144. RA Gomez P., Sempere R.N., Elena S.F., Aranda M.A.; RT "Mixed infections of Pepino mosaic virus strains modulate the evolutionary RT dynamics of this emergent virus"; RL J. Virol. 83(23):12378-12387(2009). XX RN [2] RP 1-1916 RA Gomez P., Sempere R.N., Elena S.F., Aranda M.A.; RT ; RL Submitted (29-SEP-2008) to the INSDC. RL Dpto Biologia del Estres y Patologia Vegetal, Centro de Edafologia y RL Biologia Aplicada del Segura (CEBAS)-CSIC, Campus de Espinardo, Espinardo, RL Murcia Apdo. Correos 164 30100, Spain XX DR MD5; d69e4d3bb73279a31922abf873fa321e. XX FH Key Location/Qualifiers FH FT source 1..1916 FT /organism="Pepino mosaic virus" FT /host="Solanum lycopersicum" FT /isolate="PMU08/44" FT /mol_type="genomic RNA" FT /country="Spain" FT /collection_date="Apr-2008" FT /note="CH2 type acronym: PepMV" FT /db_xref="taxon:112229" FT gene 1..705 FT /gene="TGBp1" FT CDS 1..705 FT /codon_start=1 FT /gene="TGBp1" FT /product="triple gene block protein 1" FT /db_xref="GOA:C9WC83" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:C9WC83" FT /protein_id="ACO59441.1" FT /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA FT YPSLXIGSPRPCYLDKANKISQVCLSCFPNTLCDXVDEYHLLESFPEPKLAIFGDPCQC FT TYIERLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKVQGDTVEYFDPFAVDPSEHI FT SASEKEVLEFVGDQVETTSSEELAGFEFSEVTFYCTTLAGAVQENPAKTFISPTRHTSK FT LRIGELNARSDS" FT gene 686..1057 FT /gene="TGBp2" FT CDS 686..1057 FT /codon_start=1 FT /gene="TGBp2" FT /product="triple gene block protein 2" FT /db_xref="GOA:C9WC84" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:C9WC84" FT /protein_id="ACO59442.1" FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTIQFSFSISRNTHQH FT HCYNTHSATQTGQSVPGHH" FT gene 909..1157 FT /gene="TGBp3" FT CDS 909..1157 FT /codon_start=1 FT /gene="TGBp3" FT /product="triple gene block protein 3" FT /db_xref="GOA:C9WC85" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:C9WC85" FT /protein_id="ACO59443.1" FT /translation="MSSYLSSFLHWVLSSPFNLVLALAVILTSIIATTHILQPKQVNQC FT QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL" FT gene 1203..1916 FT /gene="CP" FT CDS 1203..1916 FT /codon_start=1 FT /gene="CP" FT /product="capsid protein" FT /db_xref="GOA:Q699Z5" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q699Z5" FT /protein_id="ACO59444.1" FT /translation="MENQPTASNPSDAPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN FT PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM FT GGANTMYAIDAPPEL" XX SQ Sequence 1916 BP; 560 A; 468 C; 338 G; 548 T; 2 other; atggaaagat caactttgat caatttactt ctgttacaca aatttgaaca caagattaac 60 actgaaggaa tcattgttgt gcacggaatt gctggaactg ggaaaaccac attgcttagg 120 actttatttt ctgcataccc tagcttantt ataggttcac ctaggccttg ttacttagat 180 aaagctaata aaatttcaca agtttgcctt tcttgttttc caaatacctt gtgtgacntt 240 gttgacgagt accatctctt agaaagtttt cctgaaccaa aactagccat ttttggtgac 300 ccctgtcagt gcacttacat tgaaaggttg agaacaccca actatacatc cttcagaaca 360 caccgatttg gcaaatccac tgctgctcta ctaaacaagt tatttgatct taacattgag 420 tcagtcaaag tacaaggcga cacagtagaa tactttgatc ctttcgcagt ggacccctct 480 gaacacattt ctgcttcaga aaaagaagtt ttggaatttg taggtgatca agttgagact 540 acaagctctg aagaactagc tggtttcgag tttagtgaag ttactttcta ctgtaccaca 600 cttgctggtg ctgttcaaga aaatcctgcc aaaaccttca tttcacccac tagacacact 660 tcaaagctca gaattggtga actaaatgcc aggtctgact cctagagctg atcttactga 720 cacgtacaaa atcattgcta tagcctttct actgtcagct tgcatttact tccaaaacag 780 tcattatcaa ccagttgcag gtgataattt gcacagacta cccttcggtg gtcagtatca 840 agacggaact aagaagattt cttactttcc gcagcaacaa tcttactttc actcaggaaa 900 caagcttaat gtcctcatac ttatcttcat tcttacactg ggtattgtcc tcaccattca 960 atttagtttt agcattagcc gtaatactca ccagcatcat tgctacaaca cacattctgc 1020 aacccaaaca ggtcaatcag tgccaggtca tcattgacgg tgcagccata gttataacaa 1080 attgtccaaa cacacccgaa gttcttaaag caatcaactt ctccccttgg aacgggttaa 1140 gttttcctca attgtgaaat catattcatt atctagttaa atttaaacaa tttaactcaa 1200 ctatggaaaa ccaacctaca gcttctaacc catcagatgc accaccaact gctgctcaag 1260 ctggtgccca gagcccagcc gacttctcaa atcctaatac agctccttcc ctaagtgatt 1320 tgaagaagat caaatacgtg tcaactgtca cttcagttgc cacgcctgct gaaattgaag 1380 cccttggcaa gatctttact gccatgggtt tagcagccaa tgagaccgga cctgccatgt 1440 gggacctcgc tcgtgcttat gctgatgtgc aaagttcaaa atctgcacaa cttataggtg 1500 ccacaccatc caaccctgct ttgtctagac gtgcacttgc tgcacagttt gatcgtatca 1560 atatcacacc cagacaattc tgcatgtatt ttgcaaaaat tgtttggaac atactgttag 1620 acagcaatgt gccacctgcc aactgggcaa aattgggcta tcaggaagat accaagtttg 1680 ctgcttttga cttctttgat ggagtcacaa acccagctag tctacagcct gcagatggcc 1740 taattaggca gcccaatgaa aaagagcttg ctgctcactc ggttgctaaa tatggtgccc 1800 ttgcccgcca gaaaatatcc actggtaact acatcaccac ccttggtgaa gttacacgtg 1860 gtcacatggg cggcgccaac actatgtacg caattgatgc acctcctgaa ctttaa 1916 //