ID   FJ263360; SV 1; linear; genomic RNA; STD; VRL; 1916 BP.
XX
AC   FJ263360;
XX
DT   02-OCT-2009 (Rel. 102, Created)
DT   18-NOV-2009 (Rel. 102, Last updated, Version 2)
XX
DE   Pepino mosaic virus isolate PMU08/41 triple gene block protein 1 (TGBp1)
DE   gene, complete cds; nonfunctional triple gene block protein 2 (TGBp2) gene,
DE   complete sequence; and triple gene block protein 3 (TGBp3) and capsid
DE   protein (CP) genes, complete cds.
XX
KW   .
XX
OS   Pepino mosaic virus
OC   Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus.
XX
RN   [1]
RP   1-1916
RX   DOI; 10.1128/JVI.01486-09.
RX   PUBMED; 19759144.
RA   Gomez P., Sempere R.N., Elena S.F., Aranda M.A.;
RT   "Mixed infections of Pepino mosaic virus strains modulate the evolutionary
RT   dynamics of this emergent virus";
RL   J. Virol. 83(23):12378-12387(2009).
XX
RN   [2]
RP   1-1916
RA   Gomez P., Sempere R.N., Elena S.F., Aranda M.A.;
RT   ;
RL   Submitted (29-SEP-2008) to the INSDC.
RL   Dpto Biologia del Estres y Patologia Vegetal, Centro de Edafologia y
RL   Biologia Aplicada del Segura (CEBAS)-CSIC, Campus de Espinardo, Espinardo,
RL   Murcia Apdo. Correos 164 30100, Spain
XX
DR   MD5; f86d814ee0c3086524af9f6ec237023f.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1916
FT                   /organism="Pepino mosaic virus"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="PMU08/41"
FT                   /mol_type="genomic RNA"
FT                   /country="Spain"
FT                   /collection_date="Apr-2008"
FT                   /note="CH2 type acronym: PepMV"
FT                   /db_xref="taxon:112229"
FT   gene            1..705
FT                   /gene="TGBp1"
FT   CDS             1..705
FT                   /codon_start=1
FT                   /gene="TGBp1"
FT                   /product="triple gene block protein 1"
FT                   /db_xref="GOA:C9WC76"
FT                   /db_xref="InterPro:IPR027351"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:C9WC76"
FT                   /protein_id="ACO59434.1"
FT                   /translation="MERSTLINLLLLHKFELKINTEGIIVVHGIAGTGKTTLLRTLFSA
FT                   YPSLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC
FT                   TYIERLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKAQDDTVEYFDPFAVDPSEPI
FT                   SASEKEVLEFVSDQVETTSSEELAGLGFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK
FT                   LTIGELNARSDS"
FT   gene            686..1051
FT                   /gene="TGBp2"
FT   misc_feature    686..1051
FT                   /gene="TGBp2"
FT                   /note="nonfunctional triple gene block protein 2 due to
FT                   mutation"
FT   gene            909..1157
FT                   /gene="TGBp3"
FT   CDS             909..1157
FT                   /codon_start=1
FT                   /gene="TGBp3"
FT                   /product="triple gene block protein 3"
FT                   /db_xref="GOA:C9WC77"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:C9WC77"
FT                   /protein_id="ACO59435.1"
FT                   /translation="MSSYLSSFLHWVLFSPINLVLALAVILTSIIATTHILQPKQVNQC
FT                   QVIIDGAAIVIPNCPNTPEVLKAINFSPWNGLSFPQL"
FT   gene            1203..1916
FT                   /gene="CP"
FT   CDS             1203..1916
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="capsid protein"
FT                   /db_xref="GOA:C9WC78"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProtKB/TrEMBL:C9WC78"
FT                   /protein_id="ACO59436.1"
FT                   /translation="MENQITVSNPSDVPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY
FT                   VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQGSKSAQLIGATPSN
FT                   PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAALD
FT                   FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT                   GGANTMYAIDAPPEL"
XX
SQ   Sequence 1916 BP; 560 A; 471 C; 339 G; 546 T; 0 other;
     atggaaagat caactttgat caatttactt ctgttacaca aatttgaact caaaattaac        60
     actgaaggaa tcattgttgt gcacggaatt gctggaactg ggaaaaccac attgcttagg       120
     actttatttt ctgcataccc tagcttagtt ataggttcac ctaggccttg ttacttagat       180
     aaagctaata aaatttcaca agtttgcctt tcttgttttc caaatacctt gtgtgacatt       240
     gttgacgagt accatctctt agaaagcttt cctgaaccaa aactagccat ttttggtgac       300
     ccctgtcagt gcacttacat tgaaaggttg agaacaccca actacacatc cttcagaaca       360
     caccgatttg gcaaatccac tgctgctcta ctaaacaagt tatttgatct taacattgag       420
     tcagtcaaag cacaagacga cacagtagaa tactttgatc ctttcgcagt ggacccctct       480
     gaacccattt ctgcttcaga aaaagaagtt ttggaatttg taagtgatca agttgagact       540
     acaagctctg aagaactagc tggtctcggg tttagtgaag ttactttcta ctgtaccaca       600
     cttgctggtg ctgttcaaga aaatcctgcc aaaaccttca tttccctcac tagacacact       660
     tcaaagctca caattggtga actaaatgcc aggtctgact cctagagctg atcttactga       720
     cacgtataaa atcattgcta tagcctttct actgtcagct tgcatttact tccaaaacag       780
     tcattattaa ccagttgcag gtgataactt gcacagacta ccctttggtg gtcagtatca       840
     agacggaact aagaagattt cttactttcc gcagcaacaa tcctactttc actcaggaaa       900
     caagcttaat gtcctcatac ttatcttcat tcttacactg ggtattgttc tcaccaatca       960
     atttagtttt agcattagcc gtaatactca ccagcatcat tgctacaaca cacattctgc      1020
     aacccaaaca ggtcaatcag tgccaggtca tcattgacgg tgcagccata gttataccaa      1080
     attgtccaaa cacacccgaa gttcttaaag caatcaactt ctccccttgg aacgggttaa      1140
     gttttcctca attgtgaaat catatttgtt ctcaagtcaa attcaagcaa tttaactaaa      1200
     ctatggaaaa ccagattaca gtttctaacc catcagatgt accaccaact gctgctcaag      1260
     ctggtgccca gagcccagcc gacttctcaa atcctaatac agctccttcc ctaagcgatt      1320
     taaagaagat caaatacgtg tcaactgtca cttcagttgc cacgcctgct gaaattgagg      1380
     cccttggcaa gatctttact gccatgggtt tagcagccaa tgagaccgga cctgccatgt      1440
     gggacctcgc tcgtgcttat gctgatgtgc aaggttcaaa atctgcacaa cttataggtg      1500
     ccacaccatc caaccctgct ttgtctagac gtgcacttgc tgcacagttt gatcgtatca      1560
     atatcacacc cagacaattt tgcatgtatt ttgcaaaaat tgtctggaac atactgttag      1620
     acagcaatgt gccacctgcc aactgggcaa aattaggcta tcaggaagat accaagtttg      1680
     ctgctttaga cttctttgat ggagtcacaa atccagctag tctacagcct gcagatggcc      1740
     taatcaggca gcccaatgaa aaagagcttg ctgctcactc ggttgctaaa tatggtgccc      1800
     ttgcccgcca gaaaatatcc actggtaact acatcaccac ccttggtgaa gttacacgtg      1860
     gtcacatggg cggcgccaac actatgtacg caattgatgc acctcctgaa ctttaa          1916
//