ID   FJ263351; SV 1; linear; genomic RNA; STD; VRL; 1914 BP.
XX
AC   FJ263351;
XX
DT   02-OCT-2009 (Rel. 102, Created)
DT   18-NOV-2009 (Rel. 102, Last updated, Version 2)
XX
DE   Pepino mosaic virus isolate PMU07/29 triple gene block protein 1 (TGBp1),
DE   triple gene block protein 2 (TGBp2), and triple gene block protein 3
DE   (TGBp3) genes, complete cds; and nonfunctional capsid protein (CP) gene,
DE   complete sequence.
XX
KW   .
XX
OS   Pepino mosaic virus
OC   Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus.
XX
RN   [1]
RP   1-1914
RX   DOI; 10.1128/JVI.01486-09.
RX   PUBMED; 19759144.
RA   Gomez P., Sempere R.N., Elena S.F., Aranda M.A.;
RT   "Mixed infections of Pepino mosaic virus strains modulate the evolutionary
RT   dynamics of this emergent virus";
RL   J. Virol. 83(23):12378-12387(2009).
XX
RN   [2]
RP   1-1914
RA   Gomez P., Sempere R.N., Elena S.F., Aranda M.A.;
RT   ;
RL   Submitted (29-SEP-2008) to the INSDC.
RL   Dpto Biologia del Estres y Patologia Vegetal, Centro de Edafologia y
RL   Biologia Aplicada del Segura (CEBAS)-CSIC, Campus de Espinardo, Espinardo,
RL   Murcia Apdo. Correos 164 30100, Spain
XX
DR   MD5; fd4696451768e2603e6a5b09d91839e6.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1914
FT                   /organism="Pepino mosaic virus"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="PMU07/29"
FT                   /mol_type="genomic RNA"
FT                   /country="Spain"
FT                   /collection_date="Mar-2007"
FT                   /note="CH2 type acronym: PepMV"
FT                   /db_xref="taxon:112229"
FT   gene            1..705
FT                   /gene="TGBp1"
FT   CDS             1..705
FT                   /codon_start=1
FT                   /gene="TGBp1"
FT                   /product="triple gene block protein 1"
FT                   /db_xref="GOA:C9WC41"
FT                   /db_xref="InterPro:IPR027351"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:C9WC41"
FT                   /protein_id="ACO59399.1"
FT                   /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA
FT                   YPSLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC
FT                   TYIERLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKAQDDTVEYFDPFAVDPSEHI
FT                   SASEKEVLEFVGDQVETTSSEELTGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK
FT                   LTIGELNARSDS"
FT   gene            686..1057
FT                   /gene="TGBp2"
FT   CDS             686..1057
FT                   /codon_start=1
FT                   /gene="TGBp2"
FT                   /product="triple gene block protein 2"
FT                   /db_xref="GOA:Q699Z7"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:Q699Z7"
FT                   /protein_id="ACO59400.1"
FT                   /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT                   PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSISRNTHQH
FT                   HCYNTHSATQTGQSVPGHH"
FT   gene            909..1157
FT                   /gene="TGBp3"
FT   CDS             909..1157
FT                   /codon_start=1
FT                   /gene="TGBp3"
FT                   /product="triple gene block protein 3"
FT                   /db_xref="GOA:Q334E8"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:Q334E8"
FT                   /protein_id="ACO59401.1"
FT                   /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC
FT                   QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL"
FT   gene            1203..1914
FT                   /gene="CP"
FT   misc_feature    1203..1914
FT                   /gene="CP"
FT                   /note="nonfunctional capsid protein due to mutation"
XX
SQ   Sequence 1914 BP; 563 A; 468 C; 337 G; 546 T; 0 other;
     atggaaagat caactttgat caatttactt ctgttacaca aatttgaaca caagattaac        60
     actgaaggaa tcattgttgt gcacggaatt gctggaactg ggaaaaccac attgcttagg       120
     actttatttt ctgcataccc tagcttagtt ataggttcac ctaggccttg ttacttagat       180
     aaagctaata aaatttcaca agtttgcctt tcttgttttc caaatacttt gtgtgacatt       240
     gttgacgagt accatctctt agaaagtttt cctgaaccaa aactagccat ttttggtgac       300
     ccctgtcagt gcacttacat tgaaaggttg agaacaccca actacacatc cttcagaaca       360
     caccgatttg gcaaatccac tgctgctcta ctaaacaagt tattcgatct taacattgag       420
     tcagtcaaag cacaagacga cacagtagaa tactttgatc ctttcgcagt ggacccctct       480
     gaacacattt ctgcttcaga aaaagaagtt ttggaatttg taggtgatca agttgagact       540
     acaagctctg aagaactaac tggtctcgag tttagtgaag ttactttcta ctgtaccaca       600
     cttgctggtg ctgttcaaga aaatcctgcc aaaaccttca tttcactcac tagacacact       660
     tcaaagctca caattggtga actaaatgcc aggtctgact cctagagctg atcttactga       720
     cacgtataaa atcattgcta tagcctttct actgtcagct tgcatttact tccaaaacag       780
     tcattatcaa ccagttgcag gtgataattt gcacagacta ccctttggtg gtcagtatca       840
     agacggaact aagaagattt cttactttcc gcagcaacaa tcctactttc actcaggaaa       900
     caagcttaat gtcctcatac ttatcttcat tcttacactg ggtattgtcc tcaccaataa       960
     atttagtttt agcattagcc gtaatactca ccagcatcat tgctacaaca cacattctgc      1020
     aacccaaaca ggtcaatcag tgccaggtca tcattgacgg tgcagccata gttataacaa      1080
     attgtccaaa cacacccgaa gttcttaaag caatcaactt ctccccttgg aacgggttaa      1140
     gttttcccca attgtgaaat catatttgtt atctagttaa atttaaacaa tttaactcaa      1200
     ctatggaaaa ccaacctaca gcttctaacc catcagatgt accaccaact gctgctcaag      1260
     ctggtgccca gagcccagcc gacttctcaa atcctaatac agctccttcc ctaagtgatt      1320
     tgaagaagat caaatacgtg tcaactgtca cttcagttgc cacgcctgct gaaattgagg      1380
     cccttggcaa gatctttact gccatgggtt tagcagccaa tgagaccgga cctgccatgt      1440
     gggacctcgc tcgtgcttat gctgatgtgc aaagttcaaa atctgcacaa cttataggtg      1500
     ccacaccatc caaccctgct ttgtctagac gtgcacttgc tgcacagttt gatcgtatca      1560
     atatcacacc cagacaattc tgcatgtatt ttgcaaaaat tgtttggaac atactgttag      1620
     acagcaatgt gccacctgcc aactgggcaa aattgggcta tcaggaagat accaagtttg      1680
     ctgcttttga cttctttgat ggagtcacaa atccagctag tctacagcct gcagatggcc      1740
     taatcaggca gcccaatgaa aaagagctct gctcactcgg ttgctaaata tggtgccctt      1800
     gcccgccaga aaatatccac tggtaactac atcaccaccc ttggtgaagt tacacgtggt      1860
     cacatgggcg gcgccaaccc tatgtacgca attgatgcac ctcatgaact ttaa            1914
//