ID   FJ263348; SV 1; linear; genomic RNA; STD; VRL; 1915 BP.
XX
AC   FJ263348;
XX
DT   02-OCT-2009 (Rel. 102, Created)
DT   18-NOV-2009 (Rel. 102, Last updated, Version 2)
XX
DE   Pepino mosaic virus isolate PMU06/24 nonfunctional triple gene block
DE   protein 1 (TGBp1) gene, complete sequence; and triple gene block protein 2
DE   (TGBp2), triple gene block protein 3 (TGBp3), and capsid protein (CP)
DE   genes, complete cds.
XX
KW   .
XX
OS   Pepino mosaic virus
OC   Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus.
XX
RN   [1]
RP   1-1915
RX   DOI; 10.1128/JVI.01486-09.
RX   PUBMED; 19759144.
RA   Gomez P., Sempere R.N., Elena S.F., Aranda M.A.;
RT   "Mixed infections of Pepino mosaic virus strains modulate the evolutionary
RT   dynamics of this emergent virus";
RL   J. Virol. 83(23):12378-12387(2009).
XX
RN   [2]
RP   1-1915
RA   Gomez P., Sempere R.N., Elena S.F., Aranda M.A.;
RT   ;
RL   Submitted (29-SEP-2008) to the INSDC.
RL   Dpto Biologia del Estres y Patologia Vegetal, Centro de Edafologia y
RL   Biologia Aplicada del Segura (CEBAS)-CSIC, Campus de Espinardo, Espinardo,
RL   Murcia Apdo. Correos 164 30100, Spain
XX
DR   MD5; 35a19c05bb0f4b9fff36cf3e1dd08f35.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1915
FT                   /organism="Pepino mosaic virus"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="PMU06/24"
FT                   /mol_type="genomic RNA"
FT                   /country="Spain"
FT                   /collection_date="May-2006"
FT                   /note="CH2 type acronym: PepMV"
FT                   /db_xref="taxon:112229"
FT   gene            1..704
FT                   /gene="TGBp1"
FT   misc_feature    1..704
FT                   /gene="TGBp1"
FT                   /note="nonfunctional triple gene block protein 1 due to
FT                   mutation"
FT   gene            685..1056
FT                   /gene="TGBp2"
FT   CDS             685..1056
FT                   /codon_start=1
FT                   /gene="TGBp2"
FT                   /product="triple gene block protein 2"
FT                   /db_xref="GOA:Q699Z7"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:Q699Z7"
FT                   /protein_id="ACO59388.1"
FT                   /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT                   PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSISRNTHQH
FT                   HCYNTHSATQTGQSVPGHH"
FT   gene            908..1156
FT                   /gene="TGBp3"
FT   CDS             908..1156
FT                   /codon_start=1
FT                   /gene="TGBp3"
FT                   /product="triple gene block protein 3"
FT                   /db_xref="GOA:Q334E8"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:Q334E8"
FT                   /protein_id="ACO59389.1"
FT                   /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC
FT                   QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL"
FT   gene            1202..1915
FT                   /gene="CP"
FT   CDS             1202..1915
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="capsid protein"
FT                   /db_xref="GOA:C9WC29"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProtKB/TrEMBL:C9WC29"
FT                   /protein_id="ACO59390.1"
FT                   /translation="METQPTASNPSDVPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY
FT                   VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT                   PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD
FT                   FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT                   GGANTMYAIDAPPEL"
XX
SQ   Sequence 1915 BP; 563 A; 470 C; 337 G; 545 T; 0 other;
     atggaaagat caactttgat caatttactt ctgttacaca aatttgaaca taagattaac        60
     actgaaggaa tcattgttgt gcacggaatt gctggaactg ggaaaaccac attgcttagg       120
     actttatttt ctgcataccc tagcttagtt ataggttcac ctaggccttg ttacctagat       180
     aaagctaata aaatttcaca agttgccttt cttgttttcc caataccttg tgtgacattg       240
     ttgacgagta ccatctctta gaaagttttc ctgaaccaaa actagccatt tttggtgacc       300
     cctgtcagtg cacttacatt gaaaggttga gaacacccaa ctacacatcc ttcagaacac       360
     accgatttgg caaatccact gctgctctac taaacaagtt atttgatctt aacattgagt       420
     cagtcaaagc acaagacgac acagtagaat actttgatcc tttcgcagtg gacccctctg       480
     aacacatttc tgcttcagaa aaagaagttt tggaatttgt aggtgatcaa gttgagacta       540
     caagctctga agaactagct ggtctcgagt ttagtgaagt tactttctac tgtaccacac       600
     ttgctggtgc tgttcaagaa aatcctgcca aaaccttcat ttcactcact agacacactt       660
     caaagctcac aattggtgaa ctaaatgcca ggtctgactc ctagagctga tcttactgac       720
     acgtataaaa tcattgctat agcctttcta ctgtcagctt gcatttactt ccaaaacagt       780
     cattatcaac cagttgcagg tgataatttg cacagactac cctttggtgg tcagtatcaa       840
     gacggaacta agaagatttc ttactttccg cagcaacaat cctactttca ctcaggaaac       900
     aagcttaatg tcctcatact tatcttcatt cttacactgg gtattgtcct caccaataaa       960
     tttagtttta gcattagccg taatactcac cagcatcatt gctacaacac acattctgca      1020
     acccaaacag gtcaatcagt gccaggtcat cattgacggt gcagccatag ttataacaaa      1080
     ttgtccaaac acacccgaag ttcttaaagc aatcaacttc tccccttgga acgggttaag      1140
     ttttcctcaa ttgtgaaatc atatttgtta tctagttaaa ttcaaacaat ttaactcaac      1200
     tatggaaacc caaccaacag cttctaaccc atcagatgta ccaccaactg ctgctcaagc      1260
     tggtgcccag agcccagccg acttctcaaa tcctaataca gctccttccc taagtgattt      1320
     gaagaagatc aaatacgtgt caactgtcac ttcagttgcc acgcctgctg aaattgaggc      1380
     ccttggcaaa atctttactg ccatgggttt agcagccaat gagaccggac ctgccatgtg      1440
     ggacctcgct cgtgcttatg ctgatgtgca aagttcaaaa tctgcacaac ttataggtgc      1500
     cacaccatcc aaccctgctt tgtctagacg tgcacttgct gcacagtttg atcgtatcaa      1560
     tatcacaccc agacaattct gcatgtattt tgcaaaaatt gtttggaaca tactgttaga      1620
     cagcaatgta ccacctgcca actgggcaaa attgggctat caggaagata ccaagtttgc      1680
     tgcttttgac ttctttgatg gagtcacaaa tccagctagt ctacagcctg cagatggcct      1740
     aatcaggcag cccaatgaaa aagagcttgc tgctcactcg gttgctaaat atggtgccct      1800
     tgcccgccag aaaatatcca ctggtaacta catcaccacc cttggtgaag ttacacgtgg      1860
     tcacatgggc ggcgccaaca ctatgtacgc aattgatgca cctcctgaac tttaa           1915
//