ID   FJ263346; SV 1; linear; genomic RNA; STD; VRL; 1915 BP.
XX
AC   FJ263346;
XX
DT   02-OCT-2009 (Rel. 102, Created)
DT   18-NOV-2009 (Rel. 102, Last updated, Version 2)
XX
DE   Pepino mosaic virus isolate PMU06/22 triple gene block protein 1 (TGBp1),
DE   triple gene block protein 2 (TGBp2), triple gene block protein 3 (TGBp3),
DE   and capsid protein (CP) genes, complete cds.
XX
KW   .
XX
OS   Pepino mosaic virus
OC   Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus.
XX
RN   [1]
RP   1-1915
RX   DOI; 10.1128/JVI.01486-09.
RX   PUBMED; 19759144.
RA   Gomez P., Sempere R.N., Elena S.F., Aranda M.A.;
RT   "Mixed infections of Pepino mosaic virus strains modulate the evolutionary
RT   dynamics of this emergent virus";
RL   J. Virol. 83(23):12378-12387(2009).
XX
RN   [2]
RP   1-1915
RA   Gomez P., Sempere R.N., Elena S.F., Aranda M.A.;
RT   ;
RL   Submitted (29-SEP-2008) to the INSDC.
RL   Dpto Biologia del Estres y Patologia Vegetal, Centro de Edafologia y
RL   Biologia Aplicada del Segura (CEBAS)-CSIC, Campus de Espinardo, Espinardo,
RL   Murcia Apdo. Correos 164 30100, Spain
XX
DR   MD5; d2e88fd5457a009b2fa76437d9b5b2b5.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1915
FT                   /organism="Pepino mosaic virus"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="PMU06/22"
FT                   /mol_type="genomic RNA"
FT                   /country="Spain"
FT                   /collection_date="May-2006"
FT                   /note="CH2 type acronym: PepMV"
FT                   /db_xref="taxon:112229"
FT   gene            1..705
FT                   /gene="TGBp1"
FT   CDS             1..705
FT                   /codon_start=1
FT                   /gene="TGBp1"
FT                   /product="triple gene block protein 1"
FT                   /db_xref="GOA:C9WC22"
FT                   /db_xref="InterPro:IPR027351"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:C9WC22"
FT                   /protein_id="ACO59380.1"
FT                   /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA
FT                   YPSLVIGSPRPCYLDKANKVSQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC
FT                   TYIERLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKAQDDTVEYFDPFAVDPSEHI
FT                   SASEKEVLEFVGDQVETKSSEELAGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK
FT                   LTIGELNARSDS"
FT   gene            686..1057
FT                   /gene="TGBp2"
FT   CDS             686..1057
FT                   /codon_start=1
FT                   /gene="TGBp2"
FT                   /product="triple gene block protein 2"
FT                   /db_xref="GOA:Q699Z7"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:Q699Z7"
FT                   /protein_id="ACO59381.1"
FT                   /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT                   PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSISRNTHQH
FT                   HCYNTHSATQTGQSVPGHH"
FT   gene            909..1157
FT                   /gene="TGBp3"
FT   CDS             909..1157
FT                   /codon_start=1
FT                   /gene="TGBp3"
FT                   /product="triple gene block protein 3"
FT                   /db_xref="GOA:Q334E8"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:Q334E8"
FT                   /protein_id="ACO59382.1"
FT                   /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC
FT                   QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL"
FT   gene            1202..1915
FT                   /gene="CP"
FT   CDS             1202..1915
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="capsid protein"
FT                   /db_xref="GOA:Q2UVL7"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProtKB/TrEMBL:Q2UVL7"
FT                   /protein_id="ACO59383.1"
FT                   /translation="MENQPTASNPSDVPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY
FT                   VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT                   PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD
FT                   FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT                   GGANTMYAIDAPPEL"
XX
SQ   Sequence 1915 BP; 561 A; 469 C; 342 G; 543 T; 0 other;
     atggaaagat caactttgat caatttactt ctgttacaca aatttgaaca caagattaac        60
     actgaaggaa tcattgttgt gcacggaatt gctggaactg ggaaaaccac attgcttagg       120
     acattatttt ctgcataccc tagcttagtt ataggttcac ctaggccttg ttacttggat       180
     aaagctaata aagtttcaca agtttgcctt tcttgttttc caaatacctt gtgtgacatt       240
     gttgacgagt accatctctt agaaagtttt cctgaaccaa aactagccat ttttggtgac       300
     ccctgtcagt gcacttacat tgaaaggttg agaacaccca actacacatc cttcagaaca       360
     caccgatttg gcaaatccac tgctgctcta ctaaacaagt tatttgatct caacattgag       420
     tcagtcaaag cacaagacga cacagtagaa tactttgatc ctttcgcagt ggacccctct       480
     gaacacattt ctgcttcaga aaaagaagtt ttggaatttg taggtgatca agttgagact       540
     aaaagctctg aagaactagc tggtctcgag tttagtgaag ttactttcta ctgtaccaca       600
     cttgctggtg ctgttcaaga aaatcctgcc aaaaccttca tttcactcac tagacacact       660
     tcaaagctca caattggtga actaaatgcc aggtctgact cctagagctg atcttactga       720
     cacgtataaa atcattgcta tagcctttct actgtcagct tgcatttact tccaaaacag       780
     tcattatcaa ccagttgcag gtgataattt gcacagacta ccctttggtg gtcagtatca       840
     agacggaact aagaagattt cttactttcc gcagcaacaa tcctactttc actcaggaaa       900
     caagcttaat gtcctcatac ttatcttcat tcttacactg ggtattgtcc tcaccaataa       960
     atttagtttt agcattagcc gtaatactca ccagcatcat tgctacaaca cacattctgc      1020
     aacccaaaca ggtcaatcag tgccaggtca tcattgacgg tgcagccata gttataacaa      1080
     attgtccaaa cacacccgaa gttcttaaag caatcaactt ctccccttgg aacgggttaa      1140
     gttttcctca attgtgaaat catattgtta tctagttaaa ttcaaacaat ttaactcaac      1200
     tatggaaaac caacccacag cttctaaccc atcagatgta ccaccaactg ctgctcaagc      1260
     tggtgcccag agcccagccg acttctcaaa tcctaataca gctccttccc taagtgattt      1320
     gaagaagatc aaatacgtgt caactgtcac ttcagttgcc acgcctgctg aaattgaggc      1380
     ccttggcaag atctttactg ccatgggttt agcagccaat gagaccggac ctgccatgtg      1440
     ggacctcgct cgtgcttatg ctgatgtgca aagttcaaaa tctgcacaac ttataggtgc      1500
     cacaccatcc aaccctgctt tgtctagacg tgcacttgct gcacagtttg atcgtatcaa      1560
     tatcacaccc agacaattct gcatgtattt tgcaaaaatt gtttggaaca tactgttaga      1620
     cagcaatgtg ccacctgcca actgggcaaa attgggctat caggaagata ccaagtttgc      1680
     tgcttttgac ttctttgatg gagtcacaaa tccagctagt ctacagcctg cagatggcct      1740
     aatcaggcag cccaatgaaa aagagcttgc tgctcactcg gttgctaaat atggtgccct      1800
     tgcccgccag aaaatatcca ctggtaacta catcaccacc cttggtgaag ttacacgtgg      1860
     tcacatgggc ggcgccaaca ctatgtacgc aattgatgcg cctcctgaac tttaa           1915
//