ID   FJ263326; SV 1; linear; genomic RNA; STD; VRL; 1921 BP.
XX
AC   FJ263326;
XX
DT   02-OCT-2009 (Rel. 102, Created)
DT   18-NOV-2009 (Rel. 102, Last updated, Version 2)
XX
DE   Pepino mosaic virus isolate PMU08/47 triple gene block protein 1 (TGBp1),
DE   triple gene block protein 2 (TGBp2), triple gene block protein 3 (TGBp3),
DE   and capsid protein (CP) genes, complete cds.
XX
KW   .
XX
OS   Pepino mosaic virus
OC   Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus.
XX
RN   [1]
RP   1-1921
RX   DOI; 10.1128/JVI.01486-09.
RX   PUBMED; 19759144.
RA   Gomez P., Sempere R.N., Elena S.F., Aranda M.A.;
RT   "Mixed infections of Pepino mosaic virus strains modulate the evolutionary
RT   dynamics of this emergent virus";
RL   J. Virol. 83(23):12378-12387(2009).
XX
RN   [2]
RP   1-1921
RA   Gomez P., Sempere R.N., Elena S.F., Aranda M.A.;
RT   ;
RL   Submitted (29-SEP-2008) to the INSDC.
RL   Dpto Biologia del Estres y Patologia Vegetal, Centro de Edafologia y
RL   Biologia Aplicada del Segura (CEBAS)-CSIC, Campus de Espinardo, Espinardo,
RL   Murcia Apdo. Correos 164 30100, Spain
XX
DR   MD5; 122a1915a19fb875158d7cf9234a20f9.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1921
FT                   /organism="Pepino mosaic virus"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="PMU08/47"
FT                   /mol_type="genomic RNA"
FT                   /country="Spain"
FT                   /collection_date="Apr-2008"
FT                   /note="EU type acronym: PepMV"
FT                   /db_xref="taxon:112229"
FT   gene            1..705
FT                   /gene="TGBp1"
FT   CDS             1..705
FT                   /codon_start=1
FT                   /gene="TGBp1"
FT                   /product="triple gene block protein 1"
FT                   /db_xref="GOA:Q8JSN3"
FT                   /db_xref="InterPro:IPR027351"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:Q8JSN3"
FT                   /protein_id="ACO59302.1"
FT                   /translation="MERSTLINLLQLHHFEPKLSVEGTIVVHGIAGTGKTTLLRTLFSA
FT                   YPSLVIGSPRPCYLDKQNKISQVCLSCFPNTHCDIVDEYHLLESFLEPKLAIFGDPCQC
FT                   TYIERLRVPHYTSFRTHRFGKSTAEILNKLFDLNIVSVKKEDDIVEFFNPFEVDPTEHI
FT                   SASEEEVLDFVSDQVVTTSSEELAGLEFAETTFYCTTLAAAVAENPAKTFISLTRHTHK
FT                   LTIGELNARSNS"
FT   gene            686..1057
FT                   /gene="TGBp2"
FT   CDS             686..1057
FT                   /codon_start=1
FT                   /gene="TGBp2"
FT                   /product="triple gene block protein 2"
FT                   /db_xref="GOA:C9WBU5"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:C9WBU5"
FT                   /protein_id="ACO59303.1"
FT                   /translation="MPGLTPRADLTDTYKFIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT                   PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSFGRTTHQH
FT                   SCYNTHSATNNTQPLSGHH"
FT   gene            909..1163
FT                   /gene="TGBp3"
FT   CDS             909..1163
FT                   /codon_start=1
FT                   /gene="TGBp3"
FT                   /product="triple gene block protein 3"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:C9WBR8"
FT                   /protein_id="ACO59304.1"
FT                   /translation="MSSYLSSFSRWVLSSPINLVLALVVLLTSILAITHIQQPTIHNHC
FT                   QVIIDGAAIVITNCENTPEVLKAINFSPWNGLSFPKFEN"
FT   gene            1208..1921
FT                   /gene="CP"
FT   CDS             1208..1921
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="capsid protein"
FT                   /db_xref="GOA:Q8JJF2"
FT                   /db_xref="InterPro:IPR000052"
FT                   /db_xref="UniProtKB/TrEMBL:Q8JJF2"
FT                   /protein_id="ACO59305.1"
FT                   /translation="MPDTTPVAATSSAPPTAKDAGAKAPSDFSNPNTAPSLSDLKKVKY
FT                   VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT                   PALSRRALAAQFDRINITPRQFCMYFAKVVWNILLDSNIPPANWAKLGYQEDTKFAAFD
FT                   FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT                   GGANTMYAIDAPPEL"
XX
SQ   Sequence 1921 BP; 565 A; 481 C; 347 G; 528 T; 0 other;
     atggaaagat caactctgat taatttactt caattgcacc acttcgagcc aaaactcagt        60
     gttgaaggaa ccatagttgt gcacggaatt gcaggcactg ggaaaaccac tttacttagg       120
     actttatttt ctgcttaccc tagcttagtt ataggttcac ctaggccttg ctatttagat       180
     aaacaaaaca aaatttcaca agtttgctta tcttgctttc ccaataccca ttgtgatatt       240
     gtcgatgagt atcatttgct agaaagtttt ctagaaccaa aattggctat ctttggtgac       300
     ccctgtcaat gcacatacat tgagagacta agagtcccac attacacttc cttcagaact       360
     catagatttg gaaagtcaac tgctgagatt ttgaacaaac tgtttgacct taatatagtc       420
     tcagttaaga aagaagacga catcgttgaa ttctttaacc cttttgaagt tgaccccact       480
     gagcatatct ctgcctctga agaagaagtc ttggactttg tttctgacca agtggtgacc       540
     actagctcag aggaactagc aggacttgag tttgcagaaa caactttcta ctgcacaaca       600
     ttggccgcag ctgttgctga aaatcctgct aagactttca tctctctgac tagacacacc       660
     cacaaactca ccattgggga actaaatgcc aggtctaact cctagagctg acctcactga       720
     cacatacaaa ttcattgcca ttgctttctt gttgtcagct tgcatttact tccaaaatag       780
     ccactaccaa cctgttgctg gagacaactt gcaccgtttg ccttttggtg gccaatatca       840
     agacggcacc aaaaagatat cctattttcc acaacagcag tcatactttc attctggaaa       900
     caaattaaat gtcctcatac ttatcttcat tctcacgttg ggtattgtcc tcaccaataa       960
     atttagtttt agctttggtc gtactactca ccagcattct tgctataaca cacattcagc      1020
     aaccaacaat acacaaccat tgtcaggtca tcattgacgg tgctgcaata gtcataacaa      1080
     attgtgagaa cacaccagaa gtgcttaaag caataaactt ctccccttgg aacgggttaa      1140
     gttttcctaa atttgaaaat taaaattagt attgagtgtt cacaaaaatc aacttcaata      1200
     aacaatcatg cctgacacaa cacctgttgc tgccacttca agtgcaccac ccacagccaa      1260
     agatgctggt gccaaagctc cttctgactt ctcaaatccc aatacagctc ctagtctcag      1320
     tgatttgaag aaagtcaagt atgtctccac cgtgacctcc gtggccacac cagctgaaat      1380
     tgaagcccta ggcaaaatct tcaccgctat gggccttgcc gccaatgaga ctggtccggc      1440
     catgtgggat ctagctcgtg catatgctga cgtgcaaagt tctaaatcgg cacagctgat      1500
     tggagctacc ccttccaacc ctgcactatc acgccgagcc cttgctgctc agtttgatcg      1560
     aatcaatata acccccaggc aattttgcat gtactttgcc aaagttgttt ggaacatact      1620
     tcttgacagc aacattccac cagcaaattg ggccaaactt ggttaccaag aagatacaaa      1680
     atttgctgca tttgacttct tcgatggagt caccaaccct gccagcctgc agcctgctga      1740
     tggtcttatc aggcagccaa atgagaaaga actagctgct cactccgtag ctaagtacgg      1800
     cgccttggct aggcaaaaga tctccacagg taattatatt accacacttg gagaagtcac      1860
     acgtggacac atgggaggag ctaacaccat gtacgcgata gacgcacccc ctgaacttta      1920
     a                                                                      1921
//