ID   FJ263324; SV 1; linear; genomic RNA; STD; VRL; 1920 BP.
XX
AC   FJ263324;
XX
DT   02-OCT-2009 (Rel. 102, Created)
DT   18-NOV-2009 (Rel. 102, Last updated, Version 2)
XX
DE   Pepino mosaic virus isolate PMU08/39 triple gene block protein 1 (TGBp1),
DE   triple gene block protein 2 (TGBp2), and triple gene block protein 3
DE   (TGBp3) genes, complete cds; and nonfunctional capsid protein (CP) gene,
DE   complete sequence.
XX
KW   .
XX
OS   Pepino mosaic virus
OC   Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus.
XX
RN   [1]
RP   1-1920
RX   DOI; 10.1128/JVI.01486-09.
RX   PUBMED; 19759144.
RA   Gomez P., Sempere R.N., Elena S.F., Aranda M.A.;
RT   "Mixed infections of Pepino mosaic virus strains modulate the evolutionary
RT   dynamics of this emergent virus";
RL   J. Virol. 83(23):12378-12387(2009).
XX
RN   [2]
RP   1-1920
RA   Gomez P., Sempere R.N., Elena S.F., Aranda M.A.;
RT   ;
RL   Submitted (29-SEP-2008) to the INSDC.
RL   Dpto Biologia del Estres y Patologia Vegetal, Centro de Edafologia y
RL   Biologia Aplicada del Segura (CEBAS)-CSIC, Campus de Espinardo, Espinardo,
RL   Murcia Apdo. Correos 164 30100, Spain
XX
DR   MD5; fef262ae71c33cd99c5b906828db83df.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1920
FT                   /organism="Pepino mosaic virus"
FT                   /host="Solanum lycopersicum"
FT                   /isolate="PMU08/39"
FT                   /mol_type="genomic RNA"
FT                   /country="Spain"
FT                   /collection_date="Apr-2008"
FT                   /note="EU type acronym: PepMV"
FT                   /db_xref="taxon:112229"
FT   gene            1..705
FT                   /gene="TGBp1"
FT   CDS             1..705
FT                   /codon_start=1
FT                   /gene="TGBp1"
FT                   /product="triple gene block protein 1"
FT                   /db_xref="GOA:Q3BLT8"
FT                   /db_xref="InterPro:IPR027351"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:Q3BLT8"
FT                   /protein_id="ACO59295.1"
FT                   /translation="MERSTLINLLQLHHFEPKLSVEGIIVVHGIAGTGKTTLLRTLFSA
FT                   YPSLVIGSPRPCYLDKQNKISQVCLSCFPNTHCDIVDEYHLLESFPEPKLAIFGDPCQC
FT                   TYIERLRVPHYTSFRTHRFGKSTAEILNKLFDLNIVSVKKEDDIVEFFNPFEVDPTEHI
FT                   SASEEEVLDFVSDQVVTTSSEELAGLEFAETTFYCTTLTAAVAENPAKTFISLTRHTHK
FT                   LTIGELNARSNS"
FT   gene            686..1057
FT                   /gene="TGBp2"
FT   CDS             686..1057
FT                   /codon_start=1
FT                   /gene="TGBp2"
FT                   /product="triple gene block protein 2"
FT                   /db_xref="GOA:Q8JJH7"
FT                   /db_xref="InterPro:IPR001896"
FT                   /db_xref="UniProtKB/TrEMBL:Q8JJH7"
FT                   /protein_id="ACO59296.1"
FT                   /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT                   PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSFSRTTHQH
FT                   SCYNTHSATNNTQPLSGHH"
FT   gene            909..1163
FT                   /gene="TGBp3"
FT   CDS             909..1163
FT                   /codon_start=1
FT                   /gene="TGBp3"
FT                   /product="triple gene block protein 3"
FT                   /db_xref="InterPro:IPR003411"
FT                   /db_xref="UniProtKB/TrEMBL:Q8JV10"
FT                   /protein_id="ACO59297.1"
FT                   /translation="MSSYLSSFSHWVLSSPINLVLALVVLLTSILAITHIQQPTIHNHC
FT                   QVTIDGAAIVITNCENTPEVLKAINFSPWNGLSFPKFEN"
FT   gene            1208..1920
FT                   /gene="CP"
FT   misc_feature    1208..1920
FT                   /gene="CP"
FT                   /note="nonfunctional capsid protein due to mutation"
XX
SQ   Sequence 1920 BP; 571 A; 482 C; 342 G; 525 T; 0 other;
     atggaaagat caactctgat taatttactt caattgcacc acttcgagcc aaaactcagt        60
     gttgaaggaa tcatagttgt tcacggaatt gcaggcactg ggaaaaccac tttacttagg       120
     actttatttt ctgcttatcc tagcttagtt ataggttcac ctaggccttg ctatttagat       180
     aaacaaaaca aaatttcaca agtttgctta tcttgctttc ccaataccca ttgtgatatt       240
     gtcgatgagt atcatttgct agaaagtttt ccagaaccaa aattggctat ctttggtgac       300
     ccctgtcaat gcacatacat tgagagacta agagtcccac attacacttc cttcagaact       360
     catagatttg gaaagtcaac tgctgagatt ttgaacaaac tgtttgacct taatatagtc       420
     tcagttaaga aagaagacga catcgttgaa ttctttaacc cttttgaagt tgaccccact       480
     gaacatatct ctgcctctga agaagaagtc ttggacttcg tttctgacca agtggtgacc       540
     actagctcag aggaactagc aggacttgag tttgcagaaa caactttcta ctgcacaaca       600
     ttgaccgcag ctgttgctga aaatcctgct aagactttca tctctctgac aagacacacc       660
     cacaaactca ccattgggga actaaatgcc aggtctaact cctagagctg acctcactga       720
     cacatacaaa atcattgcca ttgctttctt gttgtcagct tgcatttact tccaaaatag       780
     ccactaccaa cctgttgctg gagacaactt gcaccgtttg ccttttggtg gccaatatca       840
     agacggcacc aaaaagatat cctattttcc acaacagcag tcatactttc attctggaaa       900
     caaattaaat gtcctcatac ttatcttcat tctcacattg ggtattgtcc tcaccaataa       960
     atttagtttt agctttagtc gtactactca ccagcattct tgctataaca cacattcagc      1020
     aaccaacaat acacaaccat tgtcaggtca ccattgacgg agctgcaata gtcataacaa      1080
     attgtgagaa cacaccagaa gtgcttaaag caatcaactt ctccccttgg aacgggttaa      1140
     gttttcctaa atttgaaaat taaaattaat attgagtgtt cacaaaaatc aacttcaata      1200
     aacaatcatg cctgacacaa cacctgttgc tgccacttca agtgcaccac ccacagccaa      1260
     agatgctggt gccaaagctc cttctgactt ctcaaatccc aatacagctc ctagtctcag      1320
     tgatttgaag aaagtcaagt atgtctccac cgtgacctgc gtggccacac cagctgaaat      1380
     tgaagcccta ggcaaaatct tcaccgctat gggccttgcc gccaatgaga ctggtccggc      1440
     catgtgggat ctagctcgtg catatgctga cgtgcaaagt tctaaatcgg cacagctgat      1500
     tggagtaccc cttccaaccc tgcactatca cgccgagccc ttgctgctca gtttgatcga      1560
     atcaatataa cccccaggca attttgcatg tactttgcca aagttgtttg gaacatactt      1620
     cttgacagca acattccacc agcaatttgg gccaaacttg gttaccaaga agatacaaaa      1680
     tttgctgcat ttgacttctt cgatggagtc accaaccctg ccagcctgca gcccgctgat      1740
     ggtcttatca ggcagccaaa tgagaaagaa ctagctgctc actccgtagc taagtacggc      1800
     gccttggcta ggcaaaagat ctccacaggt aattatatta ccacacttgg agaagtcaca      1860
     cgtggacaca tgggaggagc taacaccatg tacgcgatag acgcaccccc tgaactttaa      1920
//