Dbfetch
ID FJ263319; SV 1; linear; genomic RNA; STD; VRL; 1921 BP. XX AC FJ263319; XX DT 02-OCT-2009 (Rel. 102, Created) DT 18-NOV-2009 (Rel. 102, Last updated, Version 2) XX DE Pepino mosaic virus isolate PMU06/20a triple gene block protein 1 (TGBp1), DE triple gene block protein 2 (TGBp2), triple gene block protein 3 (TGBp3), DE and capsid protein (CP) genes, complete cds. XX KW . XX OS Pepino mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-1921 RX DOI; 10.1128/JVI.01486-09. RX PUBMED; 19759144. RA Gomez P., Sempere R.N., Elena S.F., Aranda M.A.; RT "Mixed infections of Pepino mosaic virus strains modulate the evolutionary RT dynamics of this emergent virus"; RL J. Virol. 83(23):12378-12387(2009). XX RN [2] RP 1-1921 RA Gomez P., Sempere R.N., Elena S.F., Aranda M.A.; RT ; RL Submitted (29-SEP-2008) to the INSDC. RL Dpto Biologia del Estres y Patologia Vegetal, Centro de Edafologia y RL Biologia Aplicada del Segura (CEBAS)-CSIC, Campus de Espinardo, Espinardo, RL Murcia Apdo. Correos 164 30100, Spain XX DR MD5; 1ca78ba588d1443a3ca5570965565ba2. XX FH Key Location/Qualifiers FH FT source 1..1921 FT /organism="Pepino mosaic virus" FT /host="Solanum lycopersicum" FT /isolate="PMU06/20a" FT /mol_type="genomic RNA" FT /country="Spain" FT /collection_date="May-2006" FT /note="EU type acronym: PepMV" FT /db_xref="taxon:112229" FT gene 1..705 FT /gene="TGBp1" FT CDS 1..705 FT /codon_start=1 FT /gene="TGBp1" FT /product="triple gene block protein 1" FT /db_xref="GOA:C9WBS0" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:C9WBS0" FT /protein_id="ACO59278.1" FT /translation="MERSTLINLLQLHHFEPKLTVEGIIVVHGIAGTGKTTLLRTLFSA FT YPSLVIGSPRPCYLDKQNKISQVCLSCFPNTHCDIVDEYHLLESFPEPKLAIFGDPCQC FT TYIERLRVPHYTSFRTHRFGKSTVEILNKLFDLNIVSVKKEDDIVEFFNPFEVDPTEHI FT SASEEEVLDFVSDQVVTTSSEELAGLEFAETTFYCTTLTAAVAENPAKTFISLTRHTHK FT LTIGELNARFNS" FT gene 686..1057 FT /gene="TGBp2" FT CDS 686..1057 FT /codon_start=1 FT /gene="TGBp2" FT /product="triple gene block protein 2" FT /db_xref="GOA:Q8JJH7" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q8JJH7" FT /protein_id="ACO59279.1" FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSFSRTTHQH FT SCYNTHSATNNTQPLSGHH" FT gene 909..1163 FT /gene="TGBp3" FT CDS 909..1163 FT /codon_start=1 FT /gene="TGBp3" FT /product="triple gene block protein 3" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:C9WBS2" FT /protein_id="ACO59280.1" FT /translation="MSSYLSSFSHWVLSSPINLVLALVVLLTSILAITHIQQPTIHNHC FT QVTIDGAAIIITNCENTPEVLKAINFSPWNGLSFPKFEN" FT gene 1208..1921 FT /gene="CP" FT CDS 1208..1921 FT /codon_start=1 FT /gene="CP" FT /product="capsid protein" FT /db_xref="GOA:Q8JJF2" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q8JJF2" FT /protein_id="ACO59281.1" FT /translation="MPDTTPVAATSSAPPTAKDAGAKAPSDFSNPNTAPSLSDLKKVKY FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN FT PALSRRALAAQFDRINITPRQFCMYFAKVVWNILLDSNIPPANWAKLGYQEDTKFAAFD FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM FT GGANTMYAIDAPPEL" XX SQ Sequence 1921 BP; 567 A; 483 C; 341 G; 530 T; 0 other; atggaaagat caactctgat taatttactt caattgcacc acttcgagcc aaaactcact 60 gttgaaggaa tcatagttgt gcacggaatt gcaggtactg ggaaaaccac tctacttagg 120 actttatttt ctgcttaccc tagcttagtt ataggttcac ctaggccttg ctatttagat 180 aaacaaaaca aaatttcaca agtttgctta tcttgctttc ccaataccca ttgtgatatt 240 gtcgatgagt atcatttgct agaaagtttt ccagaaccaa aattggctat ctttggtgac 300 ccctgtcaat gcacatacat tgagagactt agagtcccac attacacttc cttcagaact 360 catagatttg gaaagtcaac tgttgagatt ttgaacaaac tgtttgacct taatatagtc 420 tcagttaaga aagaagacga catcgttgaa ttctttaacc cttttgaagt tgaccccact 480 gagcatatct ctgcctctga agaagaagtc ttggacttcg tttctgacca agtggtgacc 540 actagctcag aggaactagc aggacttgag tttgcagaaa caactttcta ctgcacaaca 600 ttgaccgcag ctgttgctga aaatcctgct aagactttca tctctctgac tagacacacc 660 cacaaactca ccattgggga actaaatgcc aggtttaact cctagagctg acctcactga 720 cacatacaaa atcattgcca ttgctttctt gttgtcagct tgcatttact tccaaaatag 780 ccactaccaa cctgttgctg gagacaactt gcaccgtttg ccttttggtg gccaatatca 840 agacggcacc aaaaagatat cttattttcc acaacagcag tcatactttc attctggaaa 900 caaattaaat gtcctcatac ttatcttcat tctcacattg ggtattgtcc tcaccaataa 960 atttagtttt agctttagtc gtactactca ccagcattct tgctataaca cacattcagc 1020 aaccaacaat acacaaccat tgtcaggtca ccattgacgg tgctgcaatt atcataacaa 1080 attgtgagaa cacaccagaa gtgcttaaag caatcaactt ctccccttgg aacgggttaa 1140 gttttcctaa atttgaaaat taaaattaat attaagtgtt cacacaaatc aacttcaata 1200 aacaatcatg cctgacacaa cacctgttgc tgccacttca agtgcaccac ccacagccaa 1260 agatgctggt gccaaagctc cttctgactt ctcaaatccc aatacagctc ctagtctcag 1320 tgatttgaag aaagtcaagt atgtctccac cgtgacctcc gtggccacac cagctgaaat 1380 tgaagcccta ggcaaaatct tcaccgctat gggccttgcc gccaatgaga ctggtccggc 1440 catgtgggat ctagctcgtg catatgctga tgtgcagagt tctaaatcgg cacagctgat 1500 tggagctacc ccttccaacc ctgcactatc acgccgagcc cttgctgctc agtttgatcg 1560 aatcaatata acccccaggc aattttgcat gtactttgcc aaagttgttt ggaacatact 1620 tctcgacagc aacattccac cagcaaattg ggccaaactt ggttaccaag aagatacaaa 1680 atttgctgca tttgacttct tcgatggagt caccaaccct gccagcctgc agcctgctga 1740 tggtcttatc aggcagccaa atgagaaaga actagctgct cactccgtag ctaagtacgg 1800 cgccttggct aggcaaaaga tctccacagg taattatatt accacacttg gagaagtcac 1860 acgtggacac atgggaggag ctaacaccat gtacgcgata gacgcacccc ctgaacttta 1920 a 1921 //