ID FJ222451; SV 1; linear; genomic RNA; STD; VRL; 6171 BP. XX AC FJ222451; XX DT 21-OCT-2008 (Rel. 97, Created) DT 11-APR-2025 (Rel. 144, Last updated, Version 2) XX DE Mamastrovirus 6 isolate MLB1, complete genome. XX KW . XX OS Mamastrovirus 6 OC Viruses; Riboviria; Orthornavirae; Pisuviricota; Stelpaviricetes; OC Stellavirales; Astroviridae; Mamastrovirus. XX RN [1] RC Publication Status: Online-Only RP 1-6171 RX PUBMED; 18854035. RA Finkbeiner S.R., Kirkwood C.D., Wang D.; RT "Complete genome sequence of a highly divergent astrovirus isolated from a RT child with acute diarrhea"; RL Virol J 5:117(2008). XX RN [2] RP 1-6171 RA Finkbeiner S.R., Kirkwood C.D., Wang D.; RT ; RL Submitted (18-SEP-2008) to the INSDC. RL Molecular Microbiology and Pathology, Washington University School of RL Medicine, 4940 Parkview Place, Campus Box 8230, Saint Louis, MO 63110, USA XX DR MD5; c8a5d962a356565a058e94a2dbf2b534. XX FH Key Location/Qualifiers FH FT source 1..6171 FT /organism="Mamastrovirus 6" FT /isolate="MLB1" FT /mol_type="genomic RNA" FT /geo_loc_name="Australia" FT /isolation_source="stool" FT /collection_date="06-Oct-1999" FT /db_xref="taxon:1239570" FT 5'UTR 1..14 FT CDS 15..2378 FT /codon_start=1 FT /product="ORF1a" FT /note="putative serine protease" FT /protein_id="ACI62173.1" FT /translation="MAVPFHIGVSDKVMNLGSARSREWLNELPSTALNQLRDIFPFEVP FT INTMIVPKSRYQLGTGVTLAVQGMVTLGCYSTYALDGEAWIEVDETRIDPKCAYVGTMA FT LDRVKLMDRNKELQLDNASMSVDLQLTRHELERCRPTIIRPQRYGNFALFVLFFFLFFI FT LGTKAEDWHDQTQDYLVEFLKEAKQEIVSNLDTYYSLLLHVVRWEVVSCIIAIVSFFKL FT KRPCVAIIGLFLATISRYNYAALSIVPFLDVYSTVFLYTTMVVYFLVPHVAIITSLVCA FT LLFTIVSMVCAHHQFIIRVRGDWLVVLITIATYICDVMGIHTTAIAIAASLVRIYMCFP FT AANASVVEIKDSAGKVVQKTTLLPNWIGSMYQGARNMLQKVRTGVATFVRVNPNCLCHI FT RSEGCSGTGFRLGNDIVTAAHVVGNAVQVEVVYNNYVAQAKVRHIPDKDIAYLILPEGL FT KTMPVLKLAKNPNYEQVTIIALEGNCMLVSTTEGVCHGETISYACATRDGMSGAPVLDV FT NGNVLGVHQTNTGYTGGATVIRATDAAPYIDENAALKKEIEELKKMLREQTMNQRSVQD FT NEVVGIVRAAVQREIGILRDELNSCYQKKKGKNKKGRGARHRMLRRGQKFLTEEEYQEL FT LDKGLTREQLLDAIEEIVRARIGFPDWSDPEYSSEEDDAAVTYWWEQVKESDYKDGVPQ FT FEHIVPKYSPNERVFSEQERKDVSEELSALQSIVDGVKKEDWEETKKQTTDALNHALYV FT VDKALAQHGYILFEQRMRPKNGKRGPRRRTPNTT" FT CDS <2315..3850 FT /codon_start=1 FT /product="ORF1b" FT /note="RNA-dependent RNA-polymerase; translated by FT ribosomal frameshift" FT /protein_id="ACI62174.1" FT /translation="TTYAAKKRKKGSSEEDPKHYLDTWIGMLSPCVRWLVPERFPLYGG FT VPLDRPVYDFKVVNEDLLGLLPPPPNNDFEVFGPTVWDEIAYKKSFEKFEYADYVDFEQ FT IYPECVAFADKKFLEHFNFLSDSSFVNILATDKNVDSTPAYPKMRWWLTESDYLEECGW FT EYYVKEFENIASGQNPDVCWYLFLKKEIIRQQKIDEGDVRQIVCADPIYSRIGACFEQH FT QNAMMKDHTLSSSGQCGWSPFFGGYEARMSRLRSKGNKIFVELDWTRFDGTIPPTLLMH FT IKKLRFTLMGSMSRKYENVYKWYCRNLINRFVVLPSGEVTAQQRGNPSGQMSTTMDNNM FT INYWLQAFEYKFLNLPEEEWMHFDTLIYGDDRISTYRSIPNEYTKTIVDMYKNVFGMWV FT KPEKVKVSESLEGLSFCGFTYTPNGPVPSEPYKLMASLLKPATKLPDLIALHGKLLCFQ FT LLMANDTAHPFYGYIEQCLQYTHRALSDVSLPRRFTRRQLEYIWRGGPNDDYG" FT CDS 3843..6113 FT /codon_start=1 FT /product="capsid protein" FT /note="ORF2" FT /protein_id="ACI62175.1" FT /translation="MANASKGVTVNINNAKRKPRFTNNQRARSTRPNFTPAPKFRKRRF FT IPNRNRRRRQNTSTTGPKPAVSQTITATLGTVGSNLSDVVETECAVFLNPIIAKDSGAS FT ATFGPLQSLGAQYALWRLKWLEVRLQPLVGNSAVSGTVARVSLNMTTGPTLNSWSGLGA FT RIHKDVRVGSNLVWRIKQRLVSGPCETWWKTNTAEDPSLSLGPALEVHTIGKTMSTYKN FT EVFSSGLFLLEITGHWEFANYAASPALATLTQHKDDSETTKTLAISSDGANEPVEMLIP FT VNEWNMKAQYGGNGTLGEAIYQVVDTSVTVVTDLFPPPFSWIGKASWWFIRKMIGKTKQ FT FQVVVNGQNQTLTADVYRVYTSASAARDDKPAISSKAHEAKHLTGAVVITQISTDNILS FT ETTYTGPRSIVTPETPIGPSSYPMTPSSLVLMAGYFSGPEISDNFGKYMPLLFQQNTSK FT VTFRSGSHTIKIVSMVLVDRLMWLDKHFNQYTNEPDGVFGDVGNVFVDNDNVAKVITMS FT GSSAPANRGATLMLCRATKNIQTFNFAATVYIPAYKVKDGAGGKDVVLNVAQWEANKTL FT TYPAIPKDTYFMVVTMGGASFTIQRYVVYNEGIGDGLELPAFWGKYLSQLYGFSWSSPT FT YACVTWEPIYAEEGIPHRSALNDDEISSDGDTDDDTDTEDEDEFFGEDPIAALHALDEK FT RPARRAMFDALVKTGVSVEEASRCVLRACPTKLQIKKRNLYESLLCDGLSPESSYEEAY FT NCK" FT 3'UTR 6114..6171 XX SQ Sequence 6171 BP; 1840 A; 1127 C; 1395 G; 1809 T; 0 other; ccaagagtgg tggtatggct gtgcctttcc atattggtgt gtcagacaaa gttatgaatc 60 tgggttcagc tcgctcacgt gagtggctta atgagctacc cagcacagca ctcaaccagc 120 tgcgtgacat cttcccattt gaagtcccaa ttaatactat gatagtacct aagtccagat 180 atcaattggg tactggtgtc acacttgcag tccaaggtat ggttacattg ggttgctaca 240 gcacatatgc acttgatggt gaagcatgga ttgaagttga tgaaaccaga atagatccaa 300 agtgtgcata tgttgggacc atggccctag atagggtaaa gcttatggat cgcaacaaag 360 aactgcagct ggataatgca tcaatgagtg ttgatttgca actgactcgc catgaattgg 420 agaggtgtag gccaaccatc attcgaccgc aaagatatgg taactttgca ctttttgttc 480 tttttttctt ccttttcttt attttaggaa caaaggctga agattggcat gatcagactc 540 aggattattt ggttgaattc ctgaaagaag caaaacagga aattgtgtct aatttggata 600 catattatag ccttctttta catgtagtca ggtgggaggt ggtttcatgc attatagcga 660 ttgtttcttt tttcaaatta aagagaccct gtgttgcaat aattggttta tttttggcaa 720 ctatatccag atacaattat gcagcattgt ccattgtacc atttctggat gtctacagca 780 ctgttttctt gtacaccacc atggttgtgt attttttggt accccatgtg gctataatta 840 catcattagt ttgtgcacta ctatttacta ttgtaagtat ggtatgtgca catcaccaat 900 tcatcatacg tgtgcgtgga gattggcttg ttgtcttaat caccattgca acatatatct 960 gtgatgttat gggtatacat actacagcaa tagccattgc tgcatcgtta gtgcgtattt 1020 atatgtgctt tcctgcggct aacgcatcag tggtggaaat caaggatagt gctggtaaag 1080 tagttcagaa aacaacattg ctacccaact ggatcggctc aatgtatcaa ggtgcccgaa 1140 acatgttgca aaaagtcaga actggtgttg cgacatttgt tcgggttaac cctaattgct 1200 tgtgccatat tagaagtgaa ggttgtagtg gtacaggctt caggttaggt aatgacatag 1260 ttaccgccgc acatgttgta ggcaatgctg tacaggttga ggtggtatat aataattatg 1320 ttgctcaagc caaagttaga catatccctg ataaagatat tgcatatctt atattaccag 1380 agggtcttaa aactatgcct gttttaaaat tggcaaaaaa cccaaattat gaacaggtca 1440 caataatagc attagagggc aattgcatgc ttgtttccac tacagagggt gtatgtcatg 1500 gtgaaactat ttcatatgcc tgtgctacca gagatggtat gagtggtgct cctgttcttg 1560 atgtcaatgg aaatgttctt ggtgttcatc aaacaaatac tggatataca ggtggtgcga 1620 cagtgattag agccactgat gctgcaccat atattgatga gaatgctgca cttaagaaag 1680 aaatagagga attaaagaag atgctgcgcg aacaaacaat gaatcagaga tctgtccaag 1740 ataatgaggt tgtaggaata gttcgtgcag ctgtccaaag agagattgga atattacgtg 1800 atgaacttaa ttcatgttat caaaaaaaga aaggaaaaaa taagaaagga cgcggtgcac 1860 gacatcgtat gctgcgtcgt ggacaaaaat ttctgacaga agaggagtac caagaactgt 1920 tggataaggg actgactagg gaacaactac ttgatgcaat tgaggaaatt gtcagggcac 1980 gtatcggatt ccctgactgg tcagaccctg aatattcatc tgaagaggat gatgcagcag 2040 ttacatattg gtgggaacaa gtaaaagaga gtgattataa agatggagtg ccccagtttg 2100 aacatattgt acccaagtat tctccaaatg aaagagtatt ttctgaacaa gagcgtaagg 2160 atgttagtga agaactgtct gctttgcaat ctatagtaga tggagtgaag aaggaagatt 2220 gggaagaaac caaaaagcag actactgacg ctcttaatca tgcactatac gttgttgata 2280 aggctcttgc acaacatggt tatatactct ttgaacaacg tatgcggcca aaaaacggaa 2340 aaaggggtcc tcggaggagg accccaaaca ctacctagat acatggattg ggatgcttag 2400 tccttgcgtt cgttggctgg ttccggaacg ctttcctttg tatggtggtg tacctttaga 2460 taggccagtg tatgatttta aagttgttaa tgaagatttg ttggggttac tcccaccccc 2520 acctaataat gattttgagg tttttggtcc cactgtatgg gatgaaattg catataagaa 2580 atcatttgaa aagtttgaat atgctgatta tgttgatttt gaacagatat atcctgagtg 2640 tgttgctttt gctgataaaa aatttttgga acatttcaat tttttgtctg attcttcttt 2700 tgtaaatatt ttagcaactg ataaaaatgt tgattccaca cccgcttatc caaagatgcg 2760 gtggtggctt actgagagtg attatcttga ggagtgtgga tgggaatatt atgttaagga 2820 gtttgaaaac atcgcttctg gtcaaaatcc agatgtttgt tggtacctat tcctcaagaa 2880 agaaattatc aggcaacaaa aaattgatga aggggatgtc agacaaatag tgtgtgctga 2940 cccaatatat tccagaattg gggcatgttt tgagcaacac caaaatgcca tgatgaagga 3000 ccacactctt tcatcatctg gacagtgtgg ttggtcccct ttctttggtg gttatgaagc 3060 aaggatgtcc aggttgcgct ccaaaggtaa taaaatcttt gttgagcttg attggactcg 3120 atttgatggt acaataccac caaccttgtt gatgcacata aagaaattaa ggtttacctt 3180 aatgggttcc atgtcccgca agtatgaaaa tgtatacaag tggtattgta ggaacctaat 3240 caataggttt gttgtgctac cttcaggtga agttacagca cagcagcgtg gaaatccatc 3300 aggtcagatg tcaaccacca tggataataa catgatcaac tattggttgc aggcatttga 3360 atacaaattt ttgaatttac cagaagaaga gtggatgcat tttgatactt taatctatgg 3420 agatgatagg atatccacat atcgcagcat ccctaatgaa tataccaaga caatagttga 3480 catgtacaaa aatgtttttg gaatgtgggt taagccagaa aaggttaaag tctcagagtc 3540 cttggagggg ctctcattct gtggtttcac ttacacacca aatggcccag ttccaagtga 3600 gccttataaa cttatggcct cattgttgaa acctgctaca aaactacctg atttaatagc 3660 tcttcatggg aaacttttgt gcttccagtt gttgatggca aatgacactg cacacccatt 3720 ttatgggtat attgaacaat gtttgcagta cacacaccgt gccctcagtg atgttagctt 3780 accaaggcgc ttcactcgaa ggcagctgga gtacatttgg aggggcggac caaatgatga 3840 ctatggctaa tgccagtaaa ggtgttacag tcaacatcaa caatgcaaaa cggaagcctc 3900 gcttcaccaa taaccagcga gctagatcta ctaggccaaa ttttacacca gcacccaaat 3960 ttaggaaacg tcggtttatt cctaatagga atcgccgtcg taggcaaaat actagtacaa 4020 ctgggcctaa acctgcggtg tcgcagacaa ttacagcaac actcggcacc gttggatcaa 4080 atttgagtga tgttgttgaa actgaatgtg cagtcttttt gaatcccatt atagcaaaag 4140 attctggtgc cagtgcaact tttgggcccc ttcaatctct gggtgcacag tatgcactat 4200 ggaggctcaa gtggctggaa gtcagactcc agcctttggt gggtaactca gctgtgagtg 4260 gcactgtagc tcgtgttagt cttaacatga ctactggtcc cactctcaac tcatggtctg 4320 gtcttggagc ccgaattcac aaggatgtta gagttggttc aaatcttgtt tggcgcatta 4380 aacagcgtct agtgagtgga ccttgtgaaa cttggtggaa aactaataca gctgaggacc 4440 catcattatc tcttggacct gcactggaag tacataccat aggtaagact atgagtactt 4500 acaaaaatga agtgttttcc agtggactat ttcttcttga gataactggc cactgggaat 4560 ttgcaaatta tgctgcttct ccagcccttg ctacactcac acaacataag gatgacagtg 4620 agactacaaa aacacttgca atcagttctg atggtgccaa tgaaccagtt gagatgctaa 4680 tacctgtgaa tgaatggaat atgaaggcac agtatggtgg aaatggcacg cttggtgaag 4740 caatttacca agttgttgat actagtgtca cagttgtgac agacctcttt ccaccaccat 4800 tttcatggat tggtaaagct tcatggtggt ttatcagaaa aatgattggc aaaacaaaac 4860 aattccaggt tgttgttaat ggtcaaaacc aaacacttac agcggatgtc tatcgtgttt 4920 acacttcagc ttctgctgct agagatgata aaccagcaat ttccagcaag gcacatgaag 4980 caaagcatct aactggtgca gtggttatca cacaaatttc tacagacaac attctttcag 5040 aaaccacata tactggccca aggtctattg tcacaccaga gactcctatt ggtccgtcta 5100 gctatccaat gacaccaagt tctttggtac ttatggctgg atattttagt ggaccagaaa 5160 ttagtgataa ttttggcaag tacatgccct tgcttttcca acagaatacc tctaaggtta 5220 catttaggag tggtagtcat accataaaaa ttgtaagcat ggttcttgtg gaccggctta 5280 tgtggttgga taagcatttt aatcagtaca ctaatgaacc agatggagtc tttggagacg 5340 ttggcaacgt tttcgttgac aatgataatg tagccaaggt tattactatg agtgggtcat 5400 cagcaccagc taatagaggt gccactttaa tgttatgcag agccacaaaa aacatccaga 5460 cttttaattt tgcagcaaca gtatatatac cagcctataa agttaaagat ggtgcaggtg 5520 gcaaagatgt tgttctgaat gtggcccagt gggaagcaaa taaaactttg acatacccag 5580 ctatacctaa ggacacgtat tttatggttg taacaatggg aggtgctagt tttaccattc 5640 aaaggtatgt ggtatacaat gagggcattg gtgacggcct agaattacca gcattctggg 5700 gcaaatattt atcccagcta tatggcttta gctggagttc accaacctat gcatgtgtaa 5760 cttgggagcc catctatgct gaagaaggta taccacatag aagtgcatta aatgatgatg 5820 aaataagcag tgatggtgac actgatgatg acactgacac agaagacgaa gatgagttct 5880 tcggtgagga tcccattgct gcattgcacg cccttgatga aaagagacca gctaggcgtg 5940 caatgtttga tgcacttgtt aaaactggtg tcagtgttga agaagcatct aggtgtgtcc 6000 ttagagcatg tcctacaaaa cttcagatta agaaaaggaa cctttatgaa agcctcctgt 6060 gcgatggctt atcacctgag tcgtcgtacg aggaagcata caattgtaaa taattaatta 6120 atttcaattg taattataat ttgctttttt tcttccagca taaatgtatg c 6171 //