Dbfetch
ID FJ218487; SV 1; circular; genomic DNA; STD; VRL; 2739 BP. XX AC FJ218487; XX DT 02-OCT-2009 (Rel. 102, Created) DT 29-AUG-2012 (Rel. 113, Last updated, Version 2) XX DE Cotton leaf curl Multan virus isolate Multan segment DNA-A, complete DE sequence. XX KW . XX OS Cotton leaf curl Multan virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2739 RX PUBMED; 22899988. RA Nawaz-Ul-Rehman M.S., Briddon R.W., Fauquet C.M.; RT "A melting pot of old world begomoviruses and their satellites infecting a RT collection of gossypium species in pakistan"; RL PLoS One 7(8):E40050-E40050(2012). XX RN [2] RP 1-2739 RA Nawaz-ul-Rehman M.S., Fauquet C.M.; RT ; RL Submitted (17-SEP-2008) to the INSDC. RL ILTAB, Donald Danforth Plant Science Center, 975 North Warson Road, Saint RL Louis, MO 63132, USA XX DR MD5; 6d3f965f4abd2ce6ba578e4fe804be29. DR EuropePMC; PMC3416816; 22899988. XX FH Key Location/Qualifiers FH FT source 1..2739 FT /organism="Cotton leaf curl Multan virus" FT /segment="DNA-A" FT /host="Gossypium hirsutum" FT /isolate="Multan" FT /mol_type="genomic DNA" FT /country="Pakistan" FT /collection_date="Nov-2006" FT /db_xref="taxon:223252" FT gene 121..486 FT /gene="AV2" FT CDS 121..486 FT /codon_start=1 FT /gene="AV2" FT /product="AV2" FT /db_xref="GOA:C9W959" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:C9W959" FT /protein_id="ACQ65858.1" FT /translation="MWDPLVNEFPDTVHGFRCMLSVKYLQLLSQIILQIPLVTSYYGIY FT ICILRSRNYVEASCRYRHFYARVESTPASELRQPIHQPCCCPHCPRHKTTGMDKQAYEQ FT EAQNVSDVQKSGCSKGL" FT gene 281..1051 FT /gene="AV1" FT CDS 281..1051 FT /codon_start=1 FT /gene="AV1" FT /product="AV1" FT /note="coat protein" FT /db_xref="GOA:C9W960" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:C9W960" FT /protein_id="ACQ65857.1" FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTNRVAAPIVRVTKQQAWT FT NRPMNRKPRMYRMYRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHR FT IGKRFCVKSVYVLGKIWMDENIKTNNHTNSVMFFLVRDRRPVDKPEDFGEVFNMFDNEP FT STATVKNSHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1054..1458) FT /gene="AC3" FT CDS complement(1054..1458) FT /codon_start=1 FT /gene="AC3" FT /product="AC3" FT /note="replication enhancer protein; REn" FT /db_xref="GOA:C9W961" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:C9W961" FT /protein_id="ACQ65859.1" FT /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHVNRPFTTNMDI FT LTIRIQFNYNTRKALGLHKCFLTFRIWTTLHPQTGLFLRVFKTQVLKYLHNLGVLSINL FT VIKAVQHVLYNVIQQTMYVDQYSEIKFKLY" FT gene complement(1146..1601) FT /gene="AC2" FT misc_feature complement(1146..1601) FT /gene="AC2" FT /note="nonfunctional AC2 due to mutation; trascription FT activating protein; TrAP" FT gene complement(1537..2586) FT /gene="AC1" FT misc_feature complement(1537..2586) FT /gene="AC1" FT /note="nonfunctional AC1 due to mutation; replication FT associated protein" FT gene complement(2130..2432) FT /gene="AC4" FT CDS complement(2130..2432) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:C9W962" FT /protein_id="ACQ65860.1" FT /translation="MGNLIFTCSSNSRGNTSARISDSSTWYPQPGQHISIRTFRELNQA FT QMSRTTSTRTGTPSNGDDFRSMDDLLEEVNRQQTTLTPQHLTQAVSQRLLESLRN" XX SQ Sequence 2739 BP; 712 A; 543 C; 644 G; 840 T; 0 other; accggatggc cgcgcgattt ttttaagtgg tgggtccaga acgcacgacg atgcagactc 60 aaagcttaga taacgctctt tcggctataa gtacttgcgc actaagtttc aaattgaaac 120 atgtgggatc cactagtaaa cgaattcccg gatacggtgc acggatttcg ttgtatgctt 180 tctgtcaaat atttgcaact tttgtcgcag attattctcc agataccctt ggttacgagt 240 tactacggga tttacatctg tattctacgt tcccgtaatt atgtcgaagc gagctgcaga 300 tatcgtcatt tctacgcccg cgtcgaaagt acgccggcgt ctgaacttcg gcagcccata 360 caccaaccgt gttgctgccc ccattgtccg cgtcacaaaa caacaggcat ggacaaacag 420 gcctatgaac aggaagccca gaatgtatcg gatgtacaga agtccggatg ttccaaaggg 480 ttgtgaaggc ccatgtaagg tacagtcttt tgagtccaga catgatgttg ttcatattgg 540 taaggtaatg tgtatttctg atgttactcg tggtgtcggt ttgacccatc gtattggtaa 600 acgtttttgt gtcaagtcag tttatgtttt aggtaagata tggatggatg aaaatattaa 660 gaccaacaat cacacgaatt cggtgatgtt ctttttagtc cgcgatcgac gtcctgttga 720 caaacctgag gattttggtg aggtattcaa tatgtttgac aacgaaccca gtacagcaac 780 tgtgaagaat agtcataggg accgttacca ggtgttgagg aaatggcatg caaccgttac 840 gggtggtcaa tatgctagta aggaacaggc tttggtcaag aagtttgtca gagttaacaa 900 ttatgttgtt tacaatcaac aggaagcagg aaaatacgag aatcacaccg agaatgcatt 960 gatgctttac atggcttgta ctcacgctag caaccctgtt tatgctacgt tgaagattag 1020 gatatatttt tatgactctg taacgaattg atattaataa agtttgaatt ttatttctga 1080 atattgatct acatacatag tttgttggat tacattgtac aatacatgtt gtacagcttt 1140 aataactaaa ttaattgaaa gtacaccgag attgtgcaga tacttgagga cttgggtttt 1200 gaatacccgt aagaaaagac cagtctgagg gtgtaaggtc gtccagattc ggaaggtgag 1260 aaaacacttg tgcagtccca gagctttccg agtgttgtag ttgaactgga tcctgatcgt 1320 gagtatatcc atattcgtcg tgaatggacg gttgacgtgg ctgatgatct tgaaatagag 1380 gggatttgga acctcccaga tatatgcgcc attccctgct tgagctgcag tgatgggttc 1440 ccctgtgcgt gaatccatgg ttgtggcagt tgattgacag ataataagaa cacccgcatc 1500 aagatgtact ctcctcctcc tgatgcgtct cttcgcttac ctgtgctgta ctttgattgg 1560 tactgagtac aggggtcctt caagtgtgat gaagatcgca ttttttattg cccagttttt 1620 tagtgcggtg ttcttttcct cgtctaggaa ttctgtataa ctgctgttgg gaccaggatt 1680 gcagaggaag attgttggta tcccgccttt aatttgaact ggcttcccgt actttgtgtt 1740 ggattgccag tccctttggg cccccatgaa ctctttaaag tgtttgagga aatgcgggtc 1800 gacgtcatca atgacgttat accaggcgtc gttactgtag accttgggac tcaggtccag 1860 atgtccacac aaatagttat gtggtcccaa tgatctagcc cacatcgtct tccccgttcg 1920 actatctcct tcaattacta tacttcgagg tctaatgggc cgcgcagcgg gatcgacaac 1980 gttatcgatg gcccaaactt caagttcttc tggaacttga tcaaaagaag aacgagaaaa 2040 aggagaaata tagggagccg gtggctcctg aaagattctg tctagatttg catttaaatt 2100 atgaaattgt agtacaaaat ctttaggagc tagttcctta atgactctaa gagcctctga 2160 cttactgcct gcgttaagtg ctgcggcgta agcgtcgttt gctgtctgtt gacctcctct 2220 agcagatcgt ccatcgatct gaaatcgtcc ccattcgacg gtgtccccgt ccttgtcgat 2280 gtagtccttg acatctgagc ttgatttagc tccctgaatg ttcggatgga aatgtgctga 2340 cctggttggg gataccaggt cgaagaatcg ctgattctgg cacttgtatt tcccctcgaa 2400 ttggatgagc acgtgaagat gaggttcccc attctcgtga agctctttgc aaattttgat 2460 gaatttttta tttgttggag tttgtaggtt ttggatttgg gaaagtgctt cctctttagt 2520 aagagagcat tttggataag tcagaaaata atttttggaa tatatttgaa agcgtttaga 2580 aggcatgttg actgaaattg agtaccgatt gactccctct ggcaactctc tctagtatat 2640 cggtacccaa tatatagtga gtaccaaatg gcatatgtgt aattttttaa tgaaattcaa 2700 aatcctcacg ctccaaaaag cggccatccg tataatatt 2739 //