Dbfetch
ID FJ218486; SV 1; circular; genomic DNA; STD; VRL; 2735 BP. XX AC FJ218486; XX DT 02-OCT-2009 (Rel. 102, Created) DT 29-AUG-2012 (Rel. 113, Last updated, Version 2) XX DE Cotton leaf curl Multan virus isolate Hirs-1 segment DNA-A, complete DE sequence. XX KW . XX OS Cotton leaf curl Multan virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RC Publication Status: Online-Only RP 1-2735 RX PUBMED; 22899988. RA Nawaz-Ul-Rehman M.S., Briddon R.W., Fauquet C.M.; RT "A melting pot of old world begomoviruses and their satellites infecting a RT collection of gossypium species in pakistan"; RL PLoS One 7(8):E40050-E40050(2012). XX RN [2] RP 1-2735 RA Nawaz-ul-Rehman M.S., Fauquet C.M.; RT ; RL Submitted (17-SEP-2008) to the INSDC. RL ILTAB, Donald Danforth Plant Science Center, 975 North Warson Road, Saint RL Louis, MO 63132, USA XX DR MD5; 7c160aa1b221080202a41c6cc02c30c2. XX FH Key Location/Qualifiers FH FT source 1..2735 FT /organism="Cotton leaf curl Multan virus" FT /segment="DNA-A" FT /host="Gossypium hirsutum" FT /isolate="Hirs-1" FT /mol_type="genomic DNA" FT /country="Pakistan" FT /collection_date="Nov-2006" FT /db_xref="taxon:223252" FT gene 121..483 FT /gene="AV2" FT CDS 121..483 FT /codon_start=1 FT /gene="AV2" FT /product="AV2" FT /note="movement protein" FT /db_xref="GOA:C9W953" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:C9W953" FT /protein_id="ACQ65851.1" FT /translation="MWDPLVNEFPDTVHGFRCMLSVKYLQLLSHDYSPDTLGYELIRDL FT ICILRSRNYVEASCRYRHFYARVESTPASELRQPIHQRACPHCPRHKTTGMDKQAYAQE FT TQNVPDVQKSGCSKGM" FT gene 281..1045 FT /gene="AV1" FT CDS 281..1045 FT /codon_start=1 FT /gene="AV1" FT /product="AV1" FT /note="coat protein" FT /db_xref="GOA:C9W954" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:C9W954" FT /protein_id="ACQ65852.1" FT /translation="MSKRAADIVISTPASKVRRRLNFGSPYTSVLAPIVRVTKQQAWTN FT RPMHRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGCPIVW FT STFLCQVSLCFRLRYGWMKIYRPESHEFGDVLLVRDRRPVDKPQDFGEVFNMFDNEPST FT ATVKNSHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHTE FT NALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1048..1452) FT /gene="AC3" FT CDS complement(1048..1452) FT /codon_start=1 FT /gene="AC3" FT /product="AC3" FT /note="replication enhancer protein; REn" FT /db_xref="GOA:C9W955" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:C9W955" FT /protein_id="ACQ65853.1" FT /translation="MDSRTGEPITAAQAANGAYIWEVPNPLYFKIISHVNRPFTMNMDI FT LTIRIQFNYNTRKALGLHKCFLTFRIWTTLQPQTGLFLRVFKTQVLKYLNNLGVISINL FT VIKAVEHVLYNVIQQTMYVDQYSEIKFKLH" FT gene complement(1145..1597) FT /gene="AC2" FT CDS complement(1145..1597) FT /codon_start=1 FT /gene="AC2" FT /product="AC2" FT /note="trascription activating protein; TrAP" FT /db_xref="GOA:C9W956" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:C9W956" FT /protein_id="ACQ65854.1" FT /translation="MRSSSHLIDPCTQVPIKVQHREAKKRNRRRRVDLECGCSYYLSIN FT CHNHGFTHRGTHHCSSSSEWRIYLGGSKSPLFQDHQPRQPSIHDEYGHTHDQDPVQLQH FT SESSGTAQVFSNLPNLDDLTASDWSFLKGIQNPSPQISEQSRCNFN" FT gene complement(1494..2582) FT /gene="AC1" FT CDS complement(1494..2582) FT /codon_start=1 FT /gene="AC1" FT /product="AC1" FT /note="replication associated protein" FT /db_xref="GOA:C9W957" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:C9W957" FT /protein_id="ACQ65855.1" FT /translation="MPSKRFQIYSKNYFLTYPKCSLTKEEALSQIQNLQTPTNKKFIKI FT CKELHENGEPHLHVLIQFEGKYKCQNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKDYID FT KDGDTVEWGRFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHN FT LNANLDRIFQEPPAPYISPFSPSSFDQVPEELEVWAIDNVVDAAARPLRPRSIVIEGDS FT RTGKTMWARSXGPHNYLCGHLDXSPKVYSNDAWYNVXDDVDPHFLKHFKEFMGAQRDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNTALKNWAVKNAIFITLDRPLY FT SGTNQSTAQGSEEAQQEEESRS" FT gene complement(2126..2428) FT /gene="AC4" FT CDS complement(2126..2428) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:C9W958" FT /protein_id="ACQ65856.1" FT /translation="MGNLISMCSSSSRGNTSARISDSSTWYPQPGQHISIRTFRELNQA FT QMSRTTSTRTGTPSNGDDFRSMDDLLEEVNRQPTTLTPQHLTQAVSQRLLESLRN" XX SQ Sequence 2735 BP; 703 A; 557 C; 639 G; 833 T; 3 other; accggatggc cgcgcgattt tttttagtgg tgggtccaga acgcacgacg atgcagactc 60 aaagcttaga taacgctcct tcggctataa gtacttgcgc actaagtttc aaattgaaac 120 atgtgggatc cactagtaaa cgaattcccg gatacggtgc acgggtttcg ttgtatgctt 180 tctgtcaaat atttgcaact tttgtcgcac gattattctc cagataccct tggttacgag 240 ttaatacgtg atttaatctg tattctacgc tcccgtaatt atgtcgaagc gagctgccga 300 tatcgtcatt tctacgcccg cgtcgaaagt acgccggcgt ctgaacttcg gcagcccata 360 caccagcgtg cttgccccca ttgtccgcgt cacaaaacaa caggcatgga caaacaggcc 420 tatgcacagg aaacccagaa tgtaccggat gtacagaagt ccggatgttc caaggggatg 480 tgagggtccc tgtaaggtac agtcgtttga atctcgacac gatgtcgttc atattggtaa 540 ggtaatgtgt atttctgatg ttactcgtgg tgtcggttgc cccatcgttt ggtcaacgtt 600 tttgtgtcaa gtcagtttat gttttaggtt aagatatgga tggatgaaaa tatacagacc 660 agaatcacac gaattcggtg atgttctttt agtccgcgat cgacgtcctg ttgacaaacc 720 tcaggatttt ggtgaggtat ttaatatgtt tgacaatgaa cccagtacag cgactgtgaa 780 aaatagtcat agggaccgtt accaggtgtt gaggaaatgg catgcaaccg ttacgggtgg 840 tcaatatgca tcgaaggaac aggctttggt caagaagttt gtcagagtta acaattatgt 900 tgtttacaat caacaggaag caggaaaata cgagaatcat acggaaaatg cgttaatgct 960 ttatatggct tgtactcacg ctagcaaccc tgtttatgct acgttgaaga ttaggatata 1020 tttttatgac tctgtaacga attgatatta atgaagtttg aattttattt ctgaatattg 1080 atctacatac atagtttgtt ggattacatt gtacaataca tgttctacag ctttaataac 1140 taaattaatt gaaattacac cgagattgtt cagatatttg aggacttggg ttttgaatac 1200 ccttaagaaa agaccagtct gaggctgtaa ggtcgtccag attcggaagg ttagaaaaca 1260 cttgtgcagt cccagagctt tccgagtgtt gtaattgaac tggatcctga tcgtgagtat 1320 gtccatattc atcgtgaatg gacggttgac gtggctgatg atcttgaaat aaaggggatt 1380 tggaacctcc cagatatatg cgccattcgc tgcttgagct gcagtgatgg gttcccctgt 1440 gcgtgaatcc atggttgtgg cagttgattg acagataata agaacacccg cattcaagat 1500 ctactctcct cctcctgttg cgcttcttcg cttccctgtg ctgtactttg attggtacct 1560 gagtacaggg gtctatcaag tgtgatgaag atcgcattct ttactgccca gttctttagt 1620 gcggtgttct tttcctcgtc taggaattct ttataactgc tgtttggacc aggattgcaa 1680 aggaagattg ttggtatccc gcctttaatt tgaactggct tcccgtactt tgtgttggat 1740 tgccagtccc tttgggcccc catgaactct ttaaagtgtt tgaggaaatg cgggtcgacg 1800 tcatcmatga cgttgtacca ggcgtcgtta ctgtagacct tgggactcas gtccagatgt 1860 ccacacaaat agttatgtgg tcccratgac ctagcccaca tcgtcttccc cgtacgacta 1920 tctccctcaa ttacaatact ccgaggtcta aggggccgcg cagcggcatc gacaacgttg 1980 tcgatagccc aaacttcaag ttcttctgga acttgatcga aagaagaagg agaaaaagga 2040 gaaatatagg gagccggtgg ctcctgaaag attctgtcta gatttgcatt taaattatga 2100 aattgtagta caaaatcttt aggagctagt tccttaatga ctctaagagc ctctgactta 2160 ctgcctgcgt taagtgctgc ggcgtaagcg tcgttggctg tctgttgacc tcctctagca 2220 gatcgtccat cgatctgaaa tcgtccccat tcgacggtgt ccccgtcctt gtcgatgtag 2280 tccttgacat ctgagcttga tttagctccc tgaatgttcg gatggaaatg tgctgacctg 2340 gttggggata ccaggtcgaa gaatcgctga ttctggcact tgtatttccc ctcgaactgg 2400 atgagcacat ggagatgagg ttccccattc tcgtgaagct ctttgcaaat tttgatgaat 2460 tttttatttg ttggagtttg taggttttgg atttgggaaa gtgcttcctc cttagtaaga 2520 gagcattttg gataagtcag aaaataattt ttggaatata tttgaaagcg tttagaaggc 2580 atgttgacta aaattgagta ccgattgact ccctctggca actctctctg gtatatcggt 2640 acccaatata tagtgagtac caaatggcat atgtgtaatt ttgtaatgaa attcaaaatc 2700 ctcacgctcc aaaaagcggc catccgtata atatt 2735 //