ID FJ212288; SV 1; linear; genomic RNA; STD; VRL; 6440 BP. XX AC FJ212288; XX DT 14-OCT-2008 (Rel. 97, Created) DT 18-JUN-2009 (Rel. 101, Last updated, Version 2) XX DE Pepino mosaic virus, complete genome. XX KW . XX OS Pepino mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6440 RX DOI; 10.1111/j.1364-3703.2009.00545.x. RX PUBMED; 19523106. RA Adams I.P., Glover R.H., Monger W.A., Mumford R., Jackeviciene E., RA Navalinskiene M., Samuitiene M., Boonham N.; RT "Next-generation sequencing and metagenomic analysis: a universal RT diagnostic tool in plant virology"; RL Mol. Plant Pathol. 10(4):537-545(2009). XX RN [2] RP 1-6440 RA Adams I.P., Glover R., Monger W.A., Mumford R., Boonham N.; RT ; RL Submitted (15-SEP-2008) to the INSDC. RL Plant Health, Central Science Laboratory, Sand Hutton, York YO41 1LZ, UK XX DR MD5; f3bce309247047e0620f8e896ca0b2cf. DR EuropePMC; PMC3356388; 22623984. XX FH Key Location/Qualifiers FH FT source 1..6440 FT /organism="Pepino mosaic virus" FT /host="tomato" FT /mol_type="genomic RNA" FT /isolation_source="tomato leaf" FT /db_xref="taxon:112229" FT CDS 85..4401 FT /codon_start=1 FT /product="RNA dependent RNA polymerase" FT /db_xref="GOA:B6E641" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B6E641" FT /protein_id="ACI26675.1" FT /translation="MSRVRNTLEKIRDPQVQSSICEAAYQHVRPVLKESLINCPYALND FT YEADTLENLGVTINPHAIQTHTHAAAKVVENRMLEIVGHHLPKDEKVTFIFLKRSKLRY FT MRRAAVHKDVFVNHNIEPKDFFRYDEESTSTSFSVNTRIAYISDSLHFMEPADVTHLFD FT RCHNLKTLMATVVLPVEAIHKQTSLFPAIYSINYNEEGFEYIPGSHGGGAYFHKYETLD FT WLKYSRFIGQDPLTGLRYTITIQMVESLGANHLFLFQRGNFETPLYRTFQKNSFVTFPN FT IFHPQHVNATKPMPRSRAIQLYLYVKSVNKVTQRDIFAKVRQLISTAELELYDPDELTH FT IVNYFAYVSELSSINDYDNMLKSSFFKKLVAPMQHDWRCMIEFFRGKSDFNQLLTALQW FT KDFSYTIKTEELVIATHTEIGQAICKAATTYKERRQLTNLVKQGAVTLADFKEADQHVE FT YTHFDPEFKSTVEPHRSYENAINNLGIEINEDVPESSGTNETLLNNEISLAMSSAEHVQ FT AVQEIESLLSNHEAAPILPPAHVKTWASLASDTSSTKNREIEDIVAKLEIQRNEASCSY FT LQPNKELSKPKAAGNNLPWNAWIPLLNAHGFKGDQLQYGPDGNLIQPIQDINNSQPRSD FT YPSSLPCELVETLRKIKRAVYAIPISHRRASAYSSDIKNNRTGKLLCNQSKEWKESFAF FT KMQHEDIVKSGVVIHGCGGSGKSQALQNFLRTLGDSNDCCTVVVPTVELRNDWVNKLHK FT LPMEHIKTFEKAMIQPGFPIVIFDDYTKLPPGYIEAYLFHHANTELFILTGDSRQSVYH FT ESNNEAYIASLDEAVAYYANYCGFYLNATHRNVRSLANKLGVYSEKEGHLKITFASHAL FT QKCKVPILVPSQMKKSAMLDIGHKSMTYAGCQGLTAPKVQILLDNHTQHCSDRVLYTCL FT SRAVDSIHFINTGPNNSEFWDKLEATPYLKAFIDVYRDEKTEMLNSKPADDSPTEPEAP FT VTHFPIANGNNLEKLASALPEKFAREIYDKHHGHSNTIQTENPVVQLFQHQQAKDETLF FT WATIEARLSITTPEANLREFLLKKDVGDILFFNYHNAMCLPADPVDFEEKTWEICAAEV FT KNTYLAKPMANLINAASRQSPDFDSNKISLFLKSQWVKKVEKLGAIKSKPGQTIAAFMQ FT QTVMLYGTMARYLRKMRQRFQPKHIFINCETTTDDLNKFVKDGWNFNRTAQTNDFTAFD FT QSQDGAMLQFEVMKAKFFNIPADVIEGYINIKLNAKIFLGTLSIMRLSGEGPTFDANTE FT CSIAYTATRFHIDNTVKQVYAGDDMALDGVVSEKKSFRKLQNLLKLTSKTLYPKQVKGD FT YAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAIDMKHSYQMGDQLHDYL FT TPDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPRSTH" FT CDS 4427..5131 FT /codon_start=1 FT /product="TGB1" FT /db_xref="GOA:Q334F6" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q334F6" FT /protein_id="ACI26676.1" FT /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA FT YPSLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCQC FT TYIERLRTPNYTSFRTHRFGKSTAALLNKLFDLNIESVKAQDDTVEYFDPFAVDPSEHI FT SASEKEVLEFVGDQVETTSSEELAGLEFSEVTFYCTTLAGAVQENPAKTFISLTRHTSK FT LTIGELNARSDS" FT CDS 5112..5483 FT /codon_start=1 FT /product="TGB2" FT /db_xref="GOA:Q699Z7" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q699Z7" FT /protein_id="ACI26677.1" FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSISRNTHQH FT HCYNTHSATQTGQSVPGHH" FT CDS 5335..5583 FT /codon_start=1 FT /product="TGB3" FT /db_xref="GOA:B6E644" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:B6E644" FT /protein_id="ACI26678.1" FT /translation="MSSYLSSFLHWVLSSPINLVLVLAVILTSIIATTHILQPKQVNQC FT QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL" FT CDS 5629..6342 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:B6E645" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:B6E645" FT /protein_id="ACI26679.1" FT /translation="MENQPTASNSSDAPPTAAQAGAQSPADFSNPNTAPSLSDLKKIKY FT VSTVTSVATPAEIEALGKIFTAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN FT PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM FT GGANTMYAIDAPPEL" XX SQ Sequence 6440 BP; 2090 A; 1451 C; 1154 G; 1745 T; 0 other; aaaacaaaac ataacacata atatcaaaag tgactaaaca caacataacc acgtggaaaa 60 acagcgaaag cactttacca cattatgtct cgtgttagaa acactttaga aaagatcagg 120 gacccacaag tacaatctag catttgtgaa gccgcttacc aacatgttag acctgtgctc 180 aaagaatccc taatcaactg tccttatgcg cttaatgact atgaagcaga cactcttgag 240 aatttaggtg tcacaataaa cccccatgca atccaaacac atactcatgc ggcagctaaa 300 gttgtggaaa atagaatgct cgaaattgtt ggacaccact tgcccaagga cgagaaagtt 360 actttcattt tcctcaaaag aagcaaactg agatacatgc gaagagctgc tgtacataaa 420 gatgtttttg ttaatcacaa tatagaaccc aaggatttct tcaggtatga tgaggaatct 480 acatctacta gtttctctgt gaacaccagg atcgcttaca tctccgattc tctacatttc 540 atggaaccag ctgatgtgac ccacctcttt gaccgttgcc acaatcttaa aacactgatg 600 gcaactgtcg ttttacctgt tgaagccatc cacaaacaaa catctttatt tccagcgata 660 tactccatta attacaatga agaaggtttt gagtatatcc ctggttctca tggtggaggg 720 gcatactttc ataagtatga aacattagac tggctcaaat actctagatt cattggccag 780 gaccccttaa ctggactccg atacaccata accattcaaa tggtggagag tttaggagcc 840 aaccatcttt tcctcttcca acgaggaaat tttgaaacac ctttatacag gacgtttcaa 900 aaaaatagct ttgtgacctt tcctaacatc ttccatcccc aacatgttaa tgccacaaag 960 cccatgccaa gatccagggc aattcagctg tatttatatg tcaaatctgt caataaggtg 1020 acacaaagag atatctttgc gaaagtaagg caacttatat ccacagctga acttgaattg 1080 tatgaccctg atgaacttac acatattgtc aattattttg catatgtctc agaactaagc 1140 tcaatcaacg actatgacaa tatgctcaaa tcaagttttt tcaaaaaact tgttgcaccc 1200 atgcaacatg actggaggtg catgattgaa ttctttcggg gaaaaagtga tttcaatcaa 1260 cttttaactg ctcttcaatg gaaagacttc tcttacacca ttaaaactga agagttagtt 1320 attgctacac acactgaaat tggccaggca atctgtaaag ctgcgaccac atacaaagaa 1380 agaagacaat tgaccaattt agtcaaacaa ggcgcagtaa cattagctga tttcaaagaa 1440 gcggaccagc atgtggagta cactcacttt gatcctgagt ttaaatccac tgttgaaccc 1500 caccggagct atgaaaatgc catcaacaat cttggcattg agattaatga ggatgtacct 1560 gaaagttccg gcactaatga aacattgctt aacaatgaaa tatctttagc aatgtcatct 1620 gctgaacatg tgcaagctgt tcaagaaatt gagtctttac tctctaacca cgaagcggca 1680 ccaatattgc cccctgcaca tgttaaaaca tgggctagcc ttgcatctga cacttccagt 1740 actaaaaacc gtgaaatcga agatatagtg gctaagctgg aaatacaaag aaatgaagct 1800 agttgcagct accttcaacc aaataaggaa ttgtcaaaac ccaaagctgc tggtaacaat 1860 ctcccctgga atgcttggat cccattgctt aatgcacacg gcttcaaagg agatcaatta 1920 caatacggcc cagatggtaa cttgatacag cccatccaag acattaacaa ttcacagcct 1980 agatctgact atccgtcttc tctgccatgt gaacttgtgg aaactttgag gaaaattaag 2040 cgtgctgtct atgccatccc aataagccac aggagggcta gtgcttacag ttctgacatc 2100 aaaaataaca gaactggcaa acttctctgc aaccaaagca aagaatggaa agaaagcttt 2160 gctttcaaaa tgcaacatga agacatcgtc aaatcaggtg ttgtcataca tggttgcgga 2220 ggttctggca aatcccaggc attacaaaac ttcttgagaa cattgggtga ttcaaatgat 2280 tgctgtactg ttgtagtacc cactgttgaa cttagaaatg actgggtaaa caaactccat 2340 aaattgccca tggagcatat caaaacgttt gagaaagcaa tgattcaacc tggctttcca 2400 attgttatat ttgatgatta caccaagttg ccacctggtt acattgaagc atacctattt 2460 caccatgcca acactgagct ttttatactt actggcgatt ctaggcaaag cgtgtaccac 2520 gaatctaaca atgaagcgta cattgcctca ttagatgaag ctgttgcata ctacgctaat 2580 tactgcggtt tttatttaaa tgctactcat agaaatgtcc gtagtttagc caacaaactt 2640 ggtgtttaca gtgagaaaga aggacacctg aaaatcactt ttgcttcaca tgcattacaa 2700 aagtgcaaag tgccaatttt agttccttct caaatgaaaa agagtgctat gttagacatt 2760 ggacataaat ccatgaccta tgctggttgc caaggtttaa cagcacccaa ggtacaaatt 2820 ctccttgata accacacgca acattgctct gacagagttc tgtacacctg tctgtctcgt 2880 gcagttgatt ccatccactt catcaatact ggccccaaca attcagaatt ttgggataag 2940 cttgaagcaa caccatatct caaagccttc attgatgtct atagagatga aaaaactgaa 3000 atgctcaatt ctaagcctgc tgacgacagt ccaactgagc ctgaagcacc tgttacacat 3060 ttcccaatag caaatggaaa taacttagag aaattagctt ctgctttgcc tgaaaaattt 3120 gctagggaaa tttatgacaa gcatcatggc cactccaaca caatccaaac tgagaatcct 3180 gtggtccaac ttttccaaca tcaacaagcg aaagacgaga cactcttttg ggctacaatt 3240 gaagctagat tgtccataac aactcctgaa gcaaacctca gagaattttt gcttaagaaa 3300 gatgttggag acattctctt cttcaattac cataatgcga tgtgcttgcc tgctgatcct 3360 gttgactttg aagaaaagac ctgggagatc tgtgctgctg aagtgaaaaa cacttatctt 3420 gccaaaccca tggccaatct tatcaatgct gcaagtagac aatcacccga ctttgactct 3480 aataagatct cattattcct aaagtctcaa tgggtgaaaa aagtggaaaa acttggagct 3540 atcaaatcaa aacctggtca gaccatagct gcttttatgc aacaaacagt catgttgtat 3600 ggtactatgg ccaggtactt aaggaaaatg cggcaaagat tccagccaaa acacatattc 3660 atcaattgtg aaaccacaac tgatgatctc aataaatttg tcaaagatgg ctggaacttt 3720 aacagaaccg cccaaacaaa tgacttcact gcttttgatc agtcacaaga tggagcaatg 3780 cttcaatttg aagtcatgaa agcaaaattt tttaacattc cagctgatgt cattgaaggc 3840 tacatcaaca tcaagctgaa tgctaaaatt ttccttggaa cactctcaat aatgagactt 3900 tctggtgaag gtcccacatt tgacgctaac actgagtgtt cgattgcata cactgccaca 3960 agattccata ttgacaatac tgttaagcaa gtgtatgccg gtgacgacat ggcattagat 4020 ggagttgtga gtgaaaagaa gtcgttcagg aagttacaaa atctactaaa actcacttca 4080 aaaacgctgt acccaaaaca ggttaaaggg gattacgctg aattttgtgg ttggactttc 4140 acaccagggg gtataattaa aaatccactt aaaatgcatg cctcaattat gctgcaagaa 4200 gccattggca atctgcacac agcagccaga tcttatgcaa ttgacatgaa gcattcatac 4260 caaatgggtg accaactgca tgactaccta acccccgatg aagctgaaca acatttccta 4320 gctgtgagaa agcttcacaa actccatcaa ggcgaggcca tgcgtcttgg ggagaaaagt 4380 ccaccaagat caacccatta aggggttaag ttttccccag tttgaaatgg aaagatcaac 4440 tttgatcaat ttacttctgt tacacaaatt tgaacacaag attaacactg aaggaatcat 4500 tgttgtgcac ggaattgctg gaactgggaa aaccacattg cttaggactt tattttctgc 4560 ataccctagc ttagttatag gttcacctag gccttgttac ttagataaag ctaataaaat 4620 ttcacaagtt tgcctttctt gttttccaaa taccttgtgt gacattgttg acgagtacca 4680 tctcttagaa agttttcctg aaccaaaact agccattttt ggtgacccct gtcagtgcac 4740 ttacattgaa aggttgagaa cacccaacta cacatccttc agaacacacc gatttggcaa 4800 atccactgct gctctactaa acaagttatt tgatcttaac attgagtcag tcaaagcaca 4860 agacgacaca gtagaatact ttgatccttt cgcagtggac ccctctgaac acatttctgc 4920 ttcagaaaaa gaagttttgg aatttgtagg tgatcaagtt gagactacaa gctctgaaga 4980 actagctggt ctagagttta gtgaagttac tttctactgt accacacttg ctggtgctgt 5040 ccaagaaaat cctgccaaaa ccttcatttc actcactaga cacacttcaa agctcacaat 5100 tggtgaacta aatgccaggt ctgactccta gagctgatct tactgacacg tacaaaatca 5160 ttgctatagc ctttctactg tcagcttgca tttacttcca aaacagtcat tatcaaccag 5220 ttgcaggtga taatttgcac agactaccct ttggtggtca gtatcaagac ggaactaaga 5280 agatttctta ctttccgcag caacaatcct actttcactc aggaaacaag cttaatgtcc 5340 tcatacttat cttcattctt acactgggta ttgtcctcac caataaattt agttttagta 5400 ttagccgtaa tactcaccag catcattgct acaacacaca ttctgcaacc caaacaggtc 5460 aatcagtgcc aggtcatcat tgacggtgca gccatagtta taacaaattg tccaaacaca 5520 cccgaagttc ttaaagcaat caacttctcc ccttggaacg ggttaagttt tcctcaattg 5580 tgaaatcata tttgttatct agttaaattc aaacaattta actcaactat ggaaaaccaa 5640 cctacagctt ctaactcatc agatgcacca ccaactgctg ctcaagctgg tgcccagagc 5700 ccagccgact tctcaaatcc taatacagct ccttccctaa gtgatttgaa gaagatcaaa 5760 tacgtgtcaa ctgtcacttc agttgccacg cctgctgaaa ttgaggccct tggcaagatc 5820 tttactgcca tgggtttagc agccaatgag accggacctg ccatgtggga cctcgctcgt 5880 gcttatgctg atgtgcaaag ttcaaaatct gcacaactta taggtgccac accatccaac 5940 cctgctttgt ctagacgtgc acttgctgca cagtttgatc gtatcaatat cacacccaga 6000 caattctgca tgtattttgc aaaaattgtt tggaacatac tgttagacag caatgtgcca 6060 cctgccaact gggcaaaatt gggctatcag gaagatacca agtttgctgc tttcgacttc 6120 tttgatggag tcacaaatcc agctagtcta cagcctgcag atggcctaat caggcagccc 6180 aatgaaaaag agcttgctgc tcactcggtt gctaaatatg gtgcccttgc ccgccagaaa 6240 atatccactg gtaactacat caccaccctt ggtgaagtta cacgtggtca catgggcggc 6300 gccaacacta tgtacgcaat tgatgcacct cctgaacttt aaacactcga aacttaatca 6360 gagtggggtt ttctatagtt tattttccct tagtataaaa aaaaaaaaaa aaaaaaaaaa 6420 aaaaaaaaaa aaaaaaaaaa 6440 //