ID FJ210467; SV 1; circular; genomic DNA; STD; VRL; 2730 BP. XX AC FJ210467; XX DT 02-OCT-2009 (Rel. 102, Created) DT 08-MAY-2018 (Rel. 136, Last updated, Version 2) XX DE Cotton leaf curl Alabad virus segment DNA-A, complete sequence. XX KW . XX OS Cotton leaf curl Alabad virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2730 RA Nawaz-ul-Rehman M.S., Fauquet C.M.; RT "Diversity of begomoviruses in cotton"; RL Unpublished. XX RN [2] RP 1-2730 RA Nawaz-ul-Rehman M.S., Fauquet C.M.; RT ; RL Submitted (14-SEP-2008) to the INSDC. RL ILTAB, Donald Danforth Plant Science Center, 975 North Warson Road, St. RL Louis, MO 63132, USA XX DR MD5; ad738698131b0cc5896ad0a4484ea4a0. DR EuropePMC; PMC6571856; 31091727. XX FH Key Location/Qualifiers FH FT source 1..2730 FT /organism="Cotton leaf curl Alabad virus" FT /segment="DNA-A" FT /host="Gossypium lobatum" FT /isolate="GPMLCuV[PAK;Mul;Loba1;08]" FT /mol_type="genomic DNA" FT /country="Pakistan" FT /collected_by="Muhammad Shah Nawaz" FT /collection_date="22-Mar-2008" FT /db_xref="taxon:222456" FT CDS 121..483 FT /codon_start=1 FT /product="AV2" FT /note="movement protein" FT /db_xref="GOA:C9W8J8" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:C9W8J8" FT /protein_id="ACO07283.1" FT /translation="MWDPLVNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYELIRDL FT ICILRSRNYVEASCRYRHFYARVESTPASQLRQPIRVPCCCPHCPRHKTTGMDKQAYEQ FT ETRMYRMYRSPDVPRG" FT gene 281..1051 FT /gene="AV1" FT CDS 281..1051 FT /codon_start=1 FT /gene="AV1" FT /product="AV1" FT /note="coat protein" FT /db_xref="GOA:C9W8J9" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:C9W8J9" FT /protein_id="ACO07284.1" FT /translation="MSKRAADIVISTPASKVRRRLNFDSPYACRAAAPIVRVTKQQAWT FT NRPMNRKPECTGCTEVRMFQGDERVPVRYSRLNLDTMSFILVRYCVFRMLRVESVCTHR FT IGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNSHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1054..1458) FT /gene="AC3" FT CDS complement(1054..1458) FT /codon_start=1 FT /gene="AC3" FT /product="AC3" FT /note="replication enhancer protein" FT /db_xref="GOA:C9W8K0" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:C9W8K0" FT /protein_id="ACO07288.1" FT /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHVNRPFTTNMDI FT LTIRIQFNYNTRKALGLHKCFLTFRIWTTLHPQTGLFLRVFKTQVLKYLNNLGVISINL FT VIKAVEHVLYNVIQQTMYVDQYSEIKFKLY" FT gene complement(1151..1603) FT /gene="AC2" FT CDS complement(1151..1603) FT /codon_start=1 FT /gene="AC2" FT /product="AC2" FT /note="transcription activating protein" FT /db_xref="GOA:C9W8K1" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:C9W8K1" FT /protein_id="ACO07287.1" FT /translation="MRSSSHLKDPCTHVPIKVQHREAKRRIRRRRVDLECGCSYYLSIN FT CHNHGFTHRGTHHCSSSREWRIYLGGSKSPIFQDHQPRQPSIHDEYGYTHDQDPVQLQH FT SESSGTAQVFSNLPNLDDLTPSDWSFLKGIQNPSPQISEQSRCNFN" FT gene complement(1500..2588) FT /gene="AC1" FT CDS complement(1500..2588) FT /codon_start=1 FT /gene="AC1" FT /product="AC1" FT /note="rep" FT /db_xref="GOA:C9W8K2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR002488" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:C9W8K2" FT /protein_id="ACO07285.1" FT /translation="MPRNISFCVNAKNIFLTYPKCPIPKEQMLDILRSINCPSDKLFIR FT VAQEKHQDGSLHIHALIQFKGKAKFRNPRHFDVTHPNTPPNSIQTSRELRPVPMSNPTS FT RRTMLTSTGVSFRSMEDLLQEVNRQLLLLLQKPYYAGSKEAAMAIIREKLPEKFIFQYH FT NLNSNLDRIFTPPLEVYVSPFLSSSFNQVPEELEEWVSENVMDAAARPLRPQSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDCVPRSTVTTLVYRHCCHRPAFLKHFKEFMGAQRDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNTALKNWAVKNAIFITLEGPLY FT SRTNQSSAQGSEETHQEEESRS" FT gene complement(2141..2431) FT /gene="AC4" FT CDS complement(2141..2431) FT /codon_start=1 FT /gene="AC4" FT /product="AC4" FT /db_xref="UniProtKB/TrEMBL:C9W8K3" FT /protein_id="ACO07286.1" FT /translation="MGLCISTPSSSSKVKPSSETPDISMSLTLILHPIPSKLPGSYVQF FT RCQILHREGRCLHRLGSVSGRWKICYRRSTDSYCCCCRSPTMQVLKKQLWL" XX SQ Sequence 2730 BP; 728 A; 540 C; 654 G; 808 T; 0 other; accggatggc cgcgcgattt ttttaagtgg tgggtccaga acgcacgacg atgcagactc 60 aaagcttaga taacgctctt tcggctataa gtacttgcgc actaagtttc aaattgaaac 120 atgtgggatc cactagtaaa cgaattcccg gatacggtgc acgggtttcg ttgtatgctt 180 tctgtcaaat atttgcaact tttgtcgcag gattattctc cagataccct tggttacgag 240 ttaatacgtg atttaatctg tatactacgc tcccgtaatt atgtcgaagc gagctgccga 300 tatcgtcatt tctacgcccg cgtcgaaagt acgccggcgt ctcaacttcg acagcccata 360 cgcgtgccgt gctgctgccc ccattgtccg cgtcacaaaa caacaggcat ggacaaacag 420 gcctatgaac aggaaaccag aatgtaccgg atgtacagaa gtccggatgt tccaagggga 480 tgagagggtc cctgtaaggt acagtcgttt gaatctcgac acgatgtcgt tcatattggt 540 aaggtactgt gtatttcgga tgttacgcgt ggagtcggtt tgtacccatc gtataggtaa 600 gcgtttttgt gtcaagtcag tttatgtttt aggtaagata tggatggacg agaacatcaa 660 gaccaagaac catacgaatt cggtgatgtt tttccttgtt cgcgatcgac gaccggtaga 720 taaacctcag gattttggtg aggtatttaa catgtttgac aacgaaccca gtacagcaac 780 tgtgaaaaat agtcataggg accgttacca ggtgttgagg aaatggcatg caaccgttac 840 gggtggtcaa tatgctagta aggaacaggc tttggtcaag aagtttgtca gagttaacaa 900 ttatgttgtt tacaatcaac aggaagcagg gaaatacgag aatcatacgg aaaatgcgtt 960 aatgctttat atggcttgta ctcacgctag caaccctgtt tatgctacgt tgaagattag 1020 gatatatttt tatgactctg taacgaattg atattaataa agtttgaatt ttatttcaga 1080 atattgatct acatacatag tttgttggat tacattgtac aatacatgtt ctacagcttt 1140 aataactaaa ttaattgaaa ttacaccgag attgttcaga tatttgagga cttgggtttt 1200 gaataccctt aagaaaagac cagtctgagg gtgtaaggtc gtccagattc ggaaggttag 1260 aaaacacttg tgcagtccca gagctttccg agtgttgtag ttgaactgga tcctgatcgt 1320 gagtatatcc atattcgtcg tgaatggacg gttgacgtgg ctgatgatct tgaaatatag 1380 gggatttgga acctcccaga tatatgcgcc attccctgct tgagctgcag tgatgggttc 1440 ccctgtgcgt gaatccatgg ttgtggcagt tgattgacag ataataagag cacccgcatt 1500 caagatctac tctcctcctc ctgatgcgtc tcttcgcttc cctgtgctga actttgattg 1560 gtacgtgagt acaggggtcc ttcaagtgtg atgaagatcg cattttttac cgcccagttt 1620 tttagtgcgg tgttcttttc ctcgtctagg aattctttat aactgctgtt gggaccagga 1680 ttgcatagga agattgttgg tatgccgcct ttaatttgaa ctggcttccc gtactttgtg 1740 ttggattgcc agtccctttg ggcccccatg aactctttaa agtgtttgag gaatgcgggt 1800 cgatggcagc aatgacggta taccagcgtc gttactgtag accttgggac gcagtccaga 1860 tgtccgcaca aatagttatg tggccctaat gacctagccc acatcgtttt acccgtacga 1920 ctgtctccct caatcactat actttgaggc ctcagaggcc gcgcagcggc atccatgaca 1980 ttctcggaga cccactcttc aagttcttca ggaacttgat taaaagaaga agataaaaaa 2040 ggagaaacat aaacctccaa cggaggagtg aaaatcctat ctaaattact atttaaatta 2100 tgatattgaa aaataaattt ttctgggagt ttttccctta ttatagccat agctgcttct 2160 ttagaacctg catagtaggg cttctgcagc agcagcagta gctgtctgtt gacctcctgt 2220 agcagatctt ccatcgacct gaaactgacc ccagtcgatg taagcatcgt ccttctcgat 2280 gtaggatttg acatcggaac tggacgtagc tccctggaag tttggatgga attgggtgga 2340 gtattagggt gagtgacatc gaaatgtctg gggtttctga acttggcttt acctttgaac 2400 tggatgaggg cgtggatatg cagagaccca tcttggtgtt tctcttgtgc tactctgata 2460 aataatttat cagatgggca atttattgaa cgaagaatgt cgagcatttg ctctttgggt 2520 attgggcatt ttggataagt aaggaagata tttttggcat ttacacagaa agagatatta 2580 cgaggcatat tgaattgggg acactcaaaa ctctgaggaa tgggggactc gggggacgca 2640 tttatatggt gtccccaaat ggcaatttgg taattcagaa agaaatttca aaatctccac 2700 gctccaaaaa gcggccatcc gtataatatt 2730 //