ID FJ196837; SV 1; linear; genomic RNA; STD; VRL; 3268 BP. XX AC FJ196837; XX DT 03-FEB-2009 (Rel. 99, Created) DT 10-AUG-2011 (Rel. 109, Last updated, Version 2) XX DE Helleborus net necrosis virus strain I6 replicase polyprotein gene, partial DE cds; and triple gene block protein 1, triple gene block protein 2, triple DE gene block protein 3, capsid protein, and putative nucleic acid binding DE protein genes, complete cds. XX KW . XX OS Helleborus net necrosis virus OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus. XX RN [1] RP 1-3268 RX DOI; 10.1094/PDIS-93-4-0332. RX AGRICOLA; IND44222528. RA Eastwell K.C., duToit L.J., Druffel K.L.; RT "Helleborus net necrosis virus: A New Carlavirus Associated with 'Black RT Death' of Helleborus spp"; RL Plant Dis. 93(4):332-338(2009). XX RN [2] RP 1-3268 RA Eastwell K.C., duToit L.J., Druffel K.L.; RT ; RL Submitted (09-SEP-2008) to the INSDC. RL Department of Plant Pathology, Washington State University, 24106 North RL Bunn Road, Prosser, WA 99350, USA XX DR MD5; 7594a7568742e1c8fa149fd6db94fe59. XX FH Key Location/Qualifiers FH FT source 1..3268 FT /organism="Helleborus net necrosis virus" FT /strain="I6" FT /mol_type="genomic RNA" FT /country="USA" FT /isolation_source="Helleborus X hybridus" FT /db_xref="taxon:592206" FT CDS <1..656 FT /codon_start=3 FT /product="replicase polyprotein" FT /db_xref="GOA:B9UZ35" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:B9UZ35" FT /protein_id="ACM45991.1" FT /translation="CTESDYEAFDASQDQHIVAFELACMEYLGIPKDLIADYCYIKTHL FT GSKLGSFAIMRFSGEASTFLFNTMANMLFTFLRYELTGKEFISFAGDDMCASKRLRVST FT EHESFLGKLKLKAKVNFTANPTFCGWCLTTDGIFKKPQLVFERLCIAKETNNLANCIDN FT YAIEVSYAYKLGEAAVQHMSIEDLESYYNCVRIIIKNKHLLKSDVAKTFANGSS" FT CDS 687..1391 FT /codon_start=1 FT /product="triple gene block protein 1" FT /db_xref="GOA:B9UZ36" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:B9UZ36" FT /protein_id="ACM45992.1" FT /translation="MDYLVNKLYTNKDFERTNLPLSSPIVINCVPGAGKSTFIKDLIDH FT DPRFVGLTFGAVPHPDLSSRGIIAASDYQPKAGDLVLVDEYTEGDYTDLNALALFGDPL FT QCSSRSTKPPAHYTATFSHRFGTNTAKLLRDLDYHVHAEGEDRVTFGNLYDLDPIGQIV FT AVEPEVISLLCKHNCDFLDLKQARGKTFDCVTFYCAESTISADLRADYFVGLTRHRREL FT LILNPYASLSTA" FT CDS 1369..1695 FT /codon_start=1 FT /product="triple gene block protein 2" FT /db_xref="GOA:B9UZ31" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:B9UZ31" FT /protein_id="ACM45993.1" FT /translation="MPLSPPPDHSRSFLALAVGLTLAVCLFALTRSTLPHVGDNIHSLP FT HGGCYRDGTKQISYGKPAGRVPSSNLFSGFGFSTALFIAVVLAGLTIYKGRRTTVCHLC FT RCNH" FT CDS 1683..1886 FT /codon_start=1 FT /product="triple gene block protein 3" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:B9UZ38" FT /protein_id="ACM45994.1" FT /translation="MQSLSFFIVAAAGSCVLGYLLLERLFASSVPCTVHISGESVRIVG FT CAFTPDFIEYAKSLKPFDHGFV" FT CDS 1953..2882 FT /codon_start=1 FT /product="capsid protein" FT /db_xref="GOA:B9UZ39" FT /db_xref="InterPro:IPR000052" FT /db_xref="InterPro:IPR013569" FT /db_xref="UniProtKB/TrEMBL:B9UZ39" FT /protein_id="ACM45995.1" FT /translation="MPTEQEVEQQRRTAEAQQIERNRRTNSETQQQQRQATPPRRQQAL FT DLEDEEQAVGLEKTLLDRFLKLKEFNLNNLTATRLVNSGFETGRPKARVAASMRGDMAN FT IFTSPTLDTLQALPWNPVSSRLATAEELAKISAKIEALGFPRDQLAKLFWDVSRYCASN FT SSSPFSDPKGVIEFDGGAITRDAALAVIRDISSLRRVCRSYSKIVWNYMLVNAQPPEDW FT QAKGFTENTKYAAFDFFDSIMNSAAIQPAEGLIRKPTPEEIIANETHKRLALDRASSNR FT RFANYSTEITGGKFGRELKRSYRGSESD" FT CDS 2882..3208 FT /codon_start=1 FT /product="putative nucleic acid binding protein" FT /db_xref="GOA:B9UZ40" FT /db_xref="InterPro:IPR002568" FT /db_xref="UniProtKB/TrEMBL:B9UZ40" FT /protein_id="ACM45996.1" FT /translation="MRIRDQKRALCSVFAFYCGNNCSYADVVGVILSFVLSDSVGFGTS FT NYAKKRRARQVNRCWRCYRVIGGLCLPKNCNGVTCVPTSSNIASFILTGHRVLDTRSRR FT SRCH" FT 3'UTR 3208..3268 XX SQ Sequence 3268 BP; 835 A; 728 C; 794 G; 910 T; 1 other; tttgcactga gtcggattat gaagcattcg acgctagtca agatcaacat atcgtggctt 60 ttgaactagc ttgcatggag tacctcggaa tcccgaagga cctcattgct gattattgct 120 acataaagac gcacttgggg tcaaaattag ggtcctttgc aatcatgcgt ttttcagggg 180 aggcaagcac tttccttttc aacaccatgg ctaatatgct cttcaccttt cttcgatatg 240 agctaaccgg gaaggaattc attagttttg ctggggatga tatgtgtgct tctaaacgcc 300 tgagggtaag tacggagcac gaaagcttcc ttgggaaatt aaagttgaaa gccaaggtga 360 acttcactgc aaatccgacg ttctgcggat ggtgcctgac cactgatggg atatttaaga 420 agcctcaatt ggtttttgag aggttgtgca ttgcgaaaga aaccaataat ctggcaaatt 480 gcattgataa ttatgctatc gaagtctcat atgcttacaa acttggggaa gctgcagttc 540 aacacatgag tattgaggat ttggaaagct attacaattg tgttaggatc ataatcaaaa 600 ataaacacct gctcaagtct gacgttgcga agactttcgc aaatgggagt tcttagtttt 660 agcttaggtt ttagctatag tattgaatgg attacttagt gaataaattg tatacaaata 720 aagattttga gcgcacgaac ctgccgctta gctcaccgat cgtcatcaat tgcgtgcctg 780 gcgctggcaa aagtaccttc atcaaggacc tgatcgacca cgaccctcgt ttcgtaggtt 840 tgacttttgg tgctgtacca catcctgacc tgagctcgcg cggtatcatt gctgcttcag 900 attaccaacc aaaagctgga gatcttgttt tggtcgacga atacactgag ggtgattata 960 ccgacttgaa cgctttggct ttgtttgggg acccacttca gtgtagttct aggagtacta 1020 agccaccggc acattacacg gctactttct cgcatcggtt tgggactaac actgctaaac 1080 ttttacggga tttggactac cacgttcacg ctgagggcga ggatcgtgtc acattcggga 1140 atctctacga tttggatccc attggacaga ttgtggctgt cgagcctgaa gtaatctctc 1200 tactttgtaa gcacaattgc gatttcctcg atcttaaaca agctagaggc aaaacgtttg 1260 actgtgtgac cttttactgt gctgagagca ccattagcgc ggatctacgc gcggattact 1320 tcgttggctt gaccaggcat agaagggaac ttctgatttt aaatccttat gcctctctct 1380 ccaccgcctg atcactctag gagtttcctc gctttagctg ttggcctgac tctcgctgtt 1440 tgcttgttcg ctctaacaag gtccacctta ccgcacgtgg gagataacat acattcgttg 1500 ccacacgggg gttgttaccg tgacggcacc aaacagattt catacggtaa gcccgctggt 1560 agggtacctt ccagtaacct ctttagtggt ttcggttttt caaccgcctt gttcattgct 1620 gttgtactcg ctggtctgac catttacaag gggagacgca caactgtttg tcacctctgc 1680 agatgcaatc attgagcttc ttcatcgtcg ctgccgcggg ctcttgcgtt cttggctacc 1740 tactcttgga gcgtttattc gcctctagcg ttccttgcac tgtgcatatt agtggtgaat 1800 ccgtgagaat tgtcggctgt gctttcacgc cagatttcat agaatacgcg aaatcgctta 1860 aaccgtttga ccacgggttt gtttaacctt aggtttgcgg ttgcgtcatt cgaaatacag 1920 tgattgggaa taataaaacg agatcaagaa gaatgccaac cgaacaagag gttgaacagc 1980 agcggcgcac cgctgaggca caacaaattg agaggaaccg gagaaccaac agtgaaacgc 2040 agcagcagca aaggcaggct acgcctccac gtaggcagca agcacttgat ttggaggatg 2100 aggaacaggc cgttggactc gagaaaacac tacttgacag atttctcaag cttaaagagt 2160 tcaacctgaa taatttgacg gccacgcgcc ttgtgaattc tggttttgaa accggaagac 2220 ccaaagcacg cgttgcagca tccatgaggg gggatatggc gaacattttc actagtccaa 2280 cattagacac gttgcaagct ctaccctgga atcctgtttc atcgcgtttg gcaacygctg 2340 aagaattagc aaagatttct gcaaaaattg aagccctggg gttcccaaga gatcaactgg 2400 cgaagctctt ttgggacgtg agtcggtact gcgcgagcaa tagttcatcg ccgtttagcg 2460 atcctaaggg cgtcattgaa ttcgacggag gggccatcac tcgtgatgcc gcactcgctg 2520 tcatccgaga cattagctct ttgcgtaggg tctgtcgaag ttactccaaa atcgtttgga 2580 actacatgtt ggttaacgcg cagccccctg aagactggca agccaagggc tttacagaaa 2640 atactaagta tgcggccttc gacttctttg atagcattat gaactctgca gccatacagc 2700 cagctgaagg tctgattcgg aaaccaacac ctgaagagat aattgcgaac gagactcaca 2760 aacgcctggc acttgatagg gcttcctcca accggaggtt tgctaattat tccactgaaa 2820 tcactggggg taaattcgga cgagaattga agaggagcta ccgcgggtct gagagtgact 2880 gatgaggatt agagatcaga agcgtgcttt gtgtagtgtg tttgctttct attgtggaaa 2940 taactgcagt tatgcggatg tcgtcggtgt gattttgtca tttgtgctat ccgactctgt 3000 cggctttgga acgtcaaact acgccaaaaa gcgtagggcg cgccaagtca atagatgttg 3060 gcgttgttac cgcgttatcg gcggactttg tctacctaaa aattgtaatg gtgtcacttg 3120 tgtcccgaca tcatcaaata ttgcaagctt tatcctgact gggcatagag tactcgacac 3180 ccgctccagg aggagtcgtt gccactaaaa cttaattaat gatatgtcgt ggaacgttta 3240 aaataatttg cttttaatat atttttgc 3268 //