ID FJ196834; SV 1; linear; genomic RNA; STD; VRL; 4941 BP. XX AC FJ196834; XX DT 05-OCT-2008 (Rel. 97, Created) DT 05-OCT-2008 (Rel. 97, Last updated, Version 1) XX DE Hibiscus latent Fort Pierce virus 186kDa readthrough protein and 128kDa DE protein genes, complete cds. XX KW . XX OS Hibiscus latent Fort Pierce virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-4941 RX AGRICOLA; IND44569442. RA Adkins S., Kamenova I., Achor D., Lewandowski D.J.; RT "Biological and Molecular Characterization of a Novel Tobamovirus with a RT Unique Host Range"; RL Plant Dis. 87(10):1190-1196(2003). XX RN [2] RP 1-4941 RA Adkins S., Vanderspool M.C., Lewandowski D.J.; RT ; RL Submitted (09-SEP-2008) to the INSDC. RL Agricultural Research Service, United States Horticultural Research RL Laboratory, 2001 South Rock Road, Fort Pierce, FL 34945, USA XX DR MD5; 1b032b6a41091fa63c7db4cc7403844d. XX FH Key Location/Qualifiers FH FT source 1..4941 FT /organism="Hibiscus latent Fort Pierce virus" FT /host="Hibiscus rosa-sinensis" FT /mol_type="genomic RNA" FT /country="USA:Florida" FT /collection_date="2000" FT /db_xref="taxon:233051" FT CDS 1..4941 FT /codon_start=1 FT /transl_except=(pos:3415..3417,aa:OTHER) FT /product="186kDa readthrough protein" FT /note="replicase; contains methyltransferase, helicase, and FT RNA-dependent RNA polymerase domains; readthrough of stop FT codon generates full length protein" FT /db_xref="GOA:B6E276" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B6E276" FT /protein_id="ACI24009.1" FT /translation="MTTSTTDIKQQITNVRDDAAHGAASLIKGLATRRVYDEAVNTLTL FT LDKRPKFSFSNLVSTENAKMVTEAYPEFNISFVGNRNTVHSLAGGLRKLEMEYLMTLVP FT YGSATFDIGGNYAQHLLKGRAYVHCCNPCLDFRDIARNESYKDTVDSYLKRFTTPDCGW FT FSGAVRAITARPLPSFQKEAFERYRQVPSDVTCSQPFQDCAMRTPPNQDCFAISVHSLY FT DIPVDELGCALLRKNVKILYAALHFSEDLLLGATDAPLGNIGARFYRNGDEVTFGFDGE FT STLLYTHSFKNICGYITRSFFYAGAKYAYMKEFMVKRVDTVFCKFVRIDTQCLYKSVFH FT TQIDSDAVLEGMDSAFTARRQAAMLNAARPLFKDKAAFSVWFPNAIGKVLIPIFRGTTC FT LGAKIKMEKRLVDEDFVYTILNHIRTYTGKQLSYENVLSFVESIRSRVVINGANVRSEW FT NIPKSDIQDIAMSLFLITKLRTLQDSAVLSHFDIKKKGFFDCVRETIMEVTGSIFEPLT FT QICIDHGWFKIKEDKLKVEVPDTSRTFMSYMQTEFSESKAIESLDLWEYLDQSNQLYTH FT VSKLMERYSLPDFDVEKFKDLCAHLKVGPEVITAVIEAVMDKSLGFTVVGGKAEHQFTD FT EMKAAVAVSADYGQHCTDKKQVASAACKNEVTKPLKKQWVEKTTAALPLQATTEKTQHF FT HFNDEDESISVENLHLKRADTFKASKACMLYTGTVREQQMKNFLDYLSASICATISNIE FT KVLSDYWVSGTQTYQTYGLWDCKKKKWVLQPPTAGHSWGIASIKGEHFIVMLSFNENVE FT PICDSSWDMVCVSNDTKLFSAMKILENLTPLPVKESNAKITLVDGVPGCGKTAEILAKA FT NFKKDLILTQGKQAAQMIRKRANAIDCTKPANTSNVRTVDSFLMNPKPFTYDTLWIDEG FT LMLHTGMVNYCVLLSHCTKCFIYGDTQQIPFINRVMNFDYPGHLRTIVVDDTEKRRITS FT RCPLDVTFYLTQRYKGPVMSTSSVTRSVETKFVAGPARFEPRATPLPGKIVTFTQADKE FT TLKKKGYNDVHTVHEIQGETFNEVSLVRLTATPLNIISPESPHVLVGLSRHTNRLTYYT FT VVHDCITYSISELSRLSDYIFDIYSVEGQKAXQLQQNRLYIHKNIFCPTPKIGCMSDMQ FT DYYDRCLPGNSFVLNDYDRVTMRLVDNVFNVEPCTLTMSKADPVDAEMKLASKNFLKPL FT IRTAVEKPRVPGLLENLVAMIKRNFNSPDLAGIIDTQMVAGRVVDKFFDDFFTDDGIKH FT IDSCKYNKYLYSKENLSVWYDKQQPQSVGQLANADFIDFPGVDEYKHMIKTQPKGKLDN FT SIQTEYPALQTIVYHSKHVNSIFGPIFSEYTRILLESIDTNKFFFYTRKTVDELEGFFS FT DLTDHSNMDVLELDISKYDKSQNDFHFCVEMKIWERLGIDSFLKQVWESGHKRTTLKDF FT QAGIKTIIYHQRKSGDVTTFIGNTLIIAACVSSLLPIKDCIKAAFCGDDSVIYFKKGLD FT FSCVQSNANLMWNFEAKLFKKTYGYFCGKYIIHHSGGCIIYPDPLKLIQKLGNKSLTSR FT EHAEEFRVSLCDVSRNLGNCAYFDLLDKAIAEVFKQAGGGSYAFNAFWKYITNPALFKN FT LYDDSGPC" FT CDS 1..3417 FT /codon_start=1 FT /product="128kDa protein" FT /note="replicase; contains methyltransferase and helicase FT domains" FT /db_xref="GOA:B6E277" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:B6E277" FT /protein_id="ACI24010.1" FT /translation="MTTSTTDIKQQITNVRDDAAHGAASLIKGLATRRVYDEAVNTLTL FT LDKRPKFSFSNLVSTENAKMVTEAYPEFNISFVGNRNTVHSLAGGLRKLEMEYLMTLVP FT YGSATFDIGGNYAQHLLKGRAYVHCCNPCLDFRDIARNESYKDTVDSYLKRFTTPDCGW FT FSGAVRAITARPLPSFQKEAFERYRQVPSDVTCSQPFQDCAMRTPPNQDCFAISVHSLY FT DIPVDELGCALLRKNVKILYAALHFSEDLLLGATDAPLGNIGARFYRNGDEVTFGFDGE FT STLLYTHSFKNICGYITRSFFYAGAKYAYMKEFMVKRVDTVFCKFVRIDTQCLYKSVFH FT TQIDSDAVLEGMDSAFTARRQAAMLNAARPLFKDKAAFSVWFPNAIGKVLIPIFRGTTC FT LGAKIKMEKRLVDEDFVYTILNHIRTYTGKQLSYENVLSFVESIRSRVVINGANVRSEW FT NIPKSDIQDIAMSLFLITKLRTLQDSAVLSHFDIKKKGFFDCVRETIMEVTGSIFEPLT FT QICIDHGWFKIKEDKLKVEVPDTSRTFMSYMQTEFSESKAIESLDLWEYLDQSNQLYTH FT VSKLMERYSLPDFDVEKFKDLCAHLKVGPEVITAVIEAVMDKSLGFTVVGGKAEHQFTD FT EMKAAVAVSADYGQHCTDKKQVASAACKNEVTKPLKKQWVEKTTAALPLQATTEKTQHF FT HFNDEDESISVENLHLKRADTFKASKACMLYTGTVREQQMKNFLDYLSASICATISNIE FT KVLSDYWVSGTQTYQTYGLWDCKKKKWVLQPPTAGHSWGIASIKGEHFIVMLSFNENVE FT PICDSSWDMVCVSNDTKLFSAMKILENLTPLPVKESNAKITLVDGVPGCGKTAEILAKA FT NFKKDLILTQGKQAAQMIRKRANAIDCTKPANTSNVRTVDSFLMNPKPFTYDTLWIDEG FT LMLHTGMVNYCVLLSHCTKCFIYGDTQQIPFINRVMNFDYPGHLRTIVVDDTEKRRITS FT RCPLDVTFYLTQRYKGPVMSTSSVTRSVETKFVAGPARFEPRATPLPGKIVTFTQADKE FT TLKKKGYNDVHTVHEIQGETFNEVSLVRLTATPLNIISPESPHVLVGLSRHTNRLTYYT FT VVHDCITYSISELSRLSDYIFDIYSVEGQKA" XX SQ Sequence 4941 BP; 1474 A; 927 C; 1070 G; 1470 T; 0 other; atgacaactt caactacaga cattaaacaa caaattacaa atgtacgaga tgatgccgca 60 catggtgctg catctctcat caaaggtttg gctactcgtc gtgtatacga tgaggcagtc 120 aataccttaa ctttattgga caagagacca aaattttctt tttcaaatct ggtaagtact 180 gaaaatgcaa agatggttac tgaagcttat cccgagttta atatcagttt cgtgggtaac 240 cgcaatacag tccattctct cgccggtggg ttaaggaaac ttgaaatgga atacttaatg 300 accttagtcc catacggttc tgccaccttt gatattggcg gaaactacgc tcaacatctg 360 ttgaaaggaa gagcgtatgt ccactgctgt aatccgtgcc ttgactttcg tgacatagca 420 agaaatgaat cttacaagga cacagtggac tcttatctta aaagattcac aacacccgac 480 tgtgggtggt tttctggagc ggtccgtgct atcaccgcaa gacctttacc gtccttccag 540 aaggaagctt ttgagcgata taggcaggta ccttccgatg tgacttgttc acaacctttt 600 caggattgtg caatgagaac acctcctaat caagactgtt tcgccatatc tgttcactcg 660 ctttatgaca ttcctgtcga tgaattaggg tgtgccctac taaggaaaaa tgtgaaaatt 720 ctttatgctg cactccattt ctcggaggat ttgttattag gggctactga cgctccttta 780 ggtaatatag gtgctagatt ctatagaaat ggtgatgaag tcacttttgg ttttgacggt 840 gagtctacat tactgtacac tcacagtttc aagaacatct gtggttatat taccaggagt 900 tttttttacg ctggtgctaa atatgcttat atgaaagaat ttatggttaa aagagtagat 960 actgtttttt gcaagtttgt tcgtatcgat acccagtgtt tgtacaagtc cgtatttcat 1020 actcagatag actcagatgc tgttctagag ggtatggact cagcttttac tgccagaagg 1080 caagctgcaa tgcttaatgc tgcgaggcca ctttttaaag ataaggccgc ttttagcgtt 1140 tggttcccta atgccatagg aaaggtttta atacctatct ttcgtgggac cacctgctta 1200 ggagcaaaaa ttaaaatgga aaaaaggctc gtagatgagg actttgttta taccatcctt 1260 aatcatatca ggacatacac agggaagcag ttatcatatg aaaacgtgct ttcttttgtg 1320 gagtcaatca gatctcgggt ggttataaac ggcgctaatg tcagatctga atggaatatt 1380 cctaagagtg acattcaaga catagccatg tctttattcc tgataactaa actcagaact 1440 ctacaggatt ccgctgtgtt aagtcacttt gatataaaaa aaaaagggtt ttttgactgt 1500 gttagagaaa ctataatgga agtcactggt agcatttttg agcctttgac tcaaatttgc 1560 attgatcatg ggtggttcaa gataaaggag gacaagctta aagttgaagt cccagataca 1620 tcaagaactt tcatgagtta catgcaaacc gagtttagtg aatcaaaagc tatcgagagt 1680 ctcgacttat gggagtacct tgatcaaagc aatcaactct acacacatgt atcaaagctg 1740 atggaacgat acagccttcc tgattttgat gtggagaaat ttaaggatct ttgcgctcac 1800 ctcaaagtag ggcctgaggt tattactgca gtgattgagg ccgttatgga taaatctttg 1860 ggcttcactg tagtaggtgg gaaagctgag catcagttta ctgatgagat gaaagcggcg 1920 gtggcagtga gtgctgatta tggtcagcat tgtaccgaca agaaacaagt tgcttctgct 1980 gcttgtaaga atgaggtcac caagccgctg aaaaaacagt gggtcgagaa gactactgcg 2040 gcgttgcctt tgcaggcaac cacagaaaaa actcaacatt tccattttaa cgatgaagat 2100 gaaagcatca gtgttgagaa tttgcatctg aagagagcag acactttcaa agcttccaag 2160 gcctgtatgt tatacacggg cactgtgcga gaacagcaaa tgaagaactt tttagattat 2220 ctttctgctt ctatttgtgc tactataagt aatatagaaa aggtccttag cgactattgg 2280 gtcagtggta cgcaaacgta tcagacttat ggtctgtggg actgcaaaaa aaaaaaatgg 2340 gtacttcaac ctccgactgc tgggcactcg tgggggattg cttccattaa gggtgagcat 2400 tttatcgtca tgctcagttt taacgagaat gtagagccta tctgtgactc atcatgggat 2460 atggtttgtg tcagcaacga tacaaaactt ttttcggcta tgaaaattct cgaaaattta 2520 acccctctgc ctgtaaaaga atccaacgca aaaatcacac tggtggatgg ggttccaggg 2580 tgtggaaaga ctgccgagat acttgccaag gccaatttca aaaaggattt aattttgaca 2640 caaggcaagc aagcagcaca aatgatcaga aaaagggcca atgctataga ctgtacaaag 2700 ccggctaaca ccagcaacgt gcggacagtg gattcttttt tgatgaatcc aaagcccttt 2760 acttatgaca ccctttggat tgatgaggga ttaatgctcc acactggtat ggtgaactat 2820 tgcgttttgc ttagtcactg tacgaagtgt tttatatacg gcgacactca gcaaattcct 2880 tttatcaaca gagttatgaa ttttgactac ccaggtcatc tgaggaccat tgtagtcgat 2940 gatactgaaa aaagacgcat tacttctagg tgtccattgg acgttacctt ctacctcact 3000 cagaggtata agggtccagt gatgtctacg agtagcgtca ctaggtctgt ggagacaaaa 3060 ttcgtagcgg gaccagcacg ttttgaaccg cgtgccaccc cactacccgg gaaaattgta 3120 acatttaccc aggccgataa ggagacactc aagaagaagg gctataatga cgtgcataca 3180 gtgcacgaaa tccaaggaga aactttcaat gaggtctcat tggtgcggct gactgctact 3240 cctttaaata taatatcacc agagtcaccg cacgttcttg taggtttaag tagacatact 3300 aatagattaa cctattatac agtagttcac gattgtatta catatagtat aagtgagttg 3360 agtaggctaa gtgattatat ttttgacatt tatagtgtag aaggccaaaa ggcatagcaa 3420 ttacagcaaa accgtctcta catccacaaa aacattttct gcccgacgcc caagataggc 3480 tgtatgtctg acatgcagga ttactatgac aggtgtcttc caggaaatag ttttgtgctt 3540 aatgattatg acagagtcac tatgcgattg gtagacaacg tttttaacgt ggaaccatgc 3600 actttgacta tgtcaaaagc tgaccctgtg gatgcagaaa tgaaattggc atcaaaaaat 3660 tttttaaaac ctttgattag aaccgctgtg gaaaaaccca gggtgcctgg gcttctagag 3720 aatcttgtgg caatgattaa gaggaacttt aattcccctg atctagccgg gattatagat 3780 acgcagatgg tagctggcag ggtggtcgat aaattttttg atgacttttt cactgatgac 3840 ggtataaaac atatagattc ttgtaaatat aataagtatt tgtacagtaa agagaattta 3900 tctgtttggt atgataaaca acaaccgcaa tcagtagggc agttggctaa tgctgatttt 3960 attgattttc ctggtgtcga tgaatataaa catatgatta agacacaacc caaaggaaaa 4020 ctcgataata gcattcagac cgagtaccct gccttgcaga caattgttta tcatagtaaa 4080 cacgtcaatt ctatttttgg tcccattttt agtgagtata ctagaattct tttagagtct 4140 atagatacta acaaattttt cttttacaca aggaagactg tggacgagct tgaagggttt 4200 tttagcgatc tcactgacca cagtaatatg gatgtgttag aactagatat tagtaaatat 4260 gataagtcac agaatgattt ccacttttgc gttgagatga agatatggga aagattaggc 4320 attgattcct ttttgaaaca agtttgggag agtggtcaca aaaggaccac ccttaaagac 4380 tttcaagccg gtatcaaaac gatcatttac catcaacgta agagtggtga tgtcactacc 4440 tttatcggta acaccctcat tattgcagct tgcgtaagtt cacttctgcc tatcaaagat 4500 tgcattaaag ctgcattttg tggtgatgac tctgtgattt attttaaaaa gggtttagat 4560 ttctcttgtg tccaatccaa tgctaatctt atgtggaact ttgaggctaa gcttttcaaa 4620 aagacctacg ggtatttttg tggtaagtat atcatccacc attccggtgg ctgtataatt 4680 taccctgatc ctttgaaatt gatacaaaag cttggtaata agtctcttac ctcgagagaa 4740 catgccgaag aatttagggt atcactttgt gatgtctcta gaaacctcgg caactgtgct 4800 tatttcgact tgttggataa ggccattgct gaggttttta aacaagctgg tggcggttcg 4860 tatgctttta acgctttttg gaaatacatc acgaaccctg cgctttttaa aaatctttac 4920 gatgactctg gaccttgcta a 4941 //