ID FJ190074; SV 1; linear; genomic RNA; STD; VRL; 3124 BP. XX AC FJ190074; EU523134; EU530634; XX DT 14-OCT-2008 (Rel. 97, Created) DT 14-OCT-2008 (Rel. 97, Last updated, Version 1) XX DE Citrus tristeza virus isolate Serdang D6 25 kDa coat protein, 18 kDa DE protein, 13 kDa protein, 20 kDa protein, and 23 kDa protein genes, complete DE cds. XX KW . XX OS Citrus tristeza virus OC Viruses; Riboviria; Closteroviridae; Closterovirus. XX RN [1] RP 1-3124 RA Razean Haireen M.R., Habibuddin H., Nuradni H.; RT "An Assessment on the Prevalence of Citrus Tristeza Virus Infection in an RT Orchard Farm at Serdang Selangor, Malaysia"; RL Unpublished. XX RN [2] RP 1-3124 RA Razean Haireen M.R., Habibuddin H.; RT ; RL Submitted (27-FEB-2008) to the INSDC. RL Strategic Resource Research Centre, Malaysian Agricultural Research and RL Development Institute, P.O. Box 12301, Pejabat Besar Pos, Kuala Lumpur, RL Selangor 50774, Malaysia XX RN [3] RP 1-3124 RA Razean Haireen M.R., Habibuddin H., Nuradni H.; RT ; RL Submitted (29-FEB-2008) to the INSDC. RL Strategic Resource Research Centre, Malaysian Agricultural Research and RL Development Institute, P.O. Box 12301, Pejabat Besar Pos, Kuala Lumpur, RL Selangor 50774, Malaysia XX RN [4] RC Sequence update by submitter RP 1-3124 RA Razean Haireen M.R., Habibuddin H., Nuradni H.; RT ; RL Submitted (08-SEP-2008) to the INSDC. RL Strategic Resource Research Centre, Malaysian Agricultural Research and RL Development Institute, P.O. Box 12301, Pejabat Besar Pos, Kuala Lumpur, RL Selangor 50774, Malaysia XX DR MD5; bd63392dcaed7878cf12fedbb861ae8c. DR RFAM; RF00193; CTV_rep_sig. XX CC On or before Oct 13, 2008 this sequence version replaced CC gi:170522700, gi:169870318. XX FH Key Location/Qualifiers FH FT source 1..3124 FT /organism="Citrus tristeza virus" FT /host="Citrus hystrix" FT /isolate="Serdang D6" FT /mol_type="genomic RNA" FT /country="Malaysia" FT /collection_date="13-Jun-2007" FT /db_xref="taxon:12162" FT CDS 1..672 FT /codon_start=1 FT /product="25 kDa coat protein" FT /db_xref="GOA:B2CKL6" FT /db_xref="InterPro:IPR002679" FT /db_xref="UniProtKB/TrEMBL:B2CKL6" FT /protein_id="ACB20638.1" FT /translation="MDDETKKLKNKNKETKEVDDVVAAESSFGSVNLHIDPTLIAMNDV FT RQLGTQQNAALNRDLFLTLKGKYPNLPDKDKDFHLAMMLYRLAVKSSSLQSDDDTTGMT FT YTREGVEVELSDKLWTDVVFNFKGIGNRTNALRVWGRTNDALYLAFCRQNRNLSYGGRP FT LDAGIPAGYHYLCADFLTGAGLTDLECAVYIQAKEQLLKKRGADEVIVTNVRQLGKFNT FT R" FT CDS 638..1141 FT /codon_start=1 FT /product="18 kDa protein" FT /note="p18" FT /db_xref="InterPro:IPR008452" FT /db_xref="UniProtKB/TrEMBL:B1Q1F5" FT /protein_id="ACA96934.1" FT /translation="MSGSLGNLTHVDLLRSESRFLSGWWSFIVNVGDIIVRFALHVPNE FT DMLNSFSAISNCTIIADGSALLKDNTVVDRLENMNPLAYLLKLAKTTTTICFTMSNKVL FT FGTTKSEPLSCLAITSDRVLFKVILGTNVDDSRCGCSIWFYNNGTYQNGLIRCNNLVAL FT FSTT" FT CDS 1175..1534 FT /codon_start=1 FT /product="13 kDa protein" FT /note="p13" FT /db_xref="InterPro:IPR009692" FT /db_xref="UniProtKB/TrEMBL:B6E0N9" FT /protein_id="ACI40922.1" FT /translation="MSIRRVWLKVVAVITVLWYGKEPSISEGYNALMNDDFKFIDTHFS FT NVSYAKKCYDLANFDLDFLRVVVIPLSGSTANESRADRANISEIVESHVSDRDRMNILL FT RNKRIQIPSLLPCGN" FT CDS 1610..2158 FT /codon_start=1 FT /product="20 kDa protein" FT /note="p20" FT /db_xref="InterPro:IPR021575" FT /db_xref="InterPro:IPR021742" FT /db_xref="UniProtKB/TrEMBL:B6E0P0" FT /protein_id="ACI40923.1" FT /translation="MRAYFSVNDYISLLAKVGAVVERLCDPGVTLTEVMDEINDFNSFL FT ALVHSMKSDMNGDHQDGHHEMGEHKSRLLCNIEARLRVLLDVIRRRFTREKLLCTSATD FT VMGFFVMRYMSSSHTSFESVMRTELKLVVKVVLSDLSRTHKLDFSERAFAAYGILLQKG FT TVSTVCGQFDINLVSPSCV" FT CDS 2240..2869 FT /codon_start=1 FT /product="23 kDa protein" FT /note="p23" FT /db_xref="InterPro:IPR006893" FT /db_xref="UniProtKB/TrEMBL:B6E0P1" FT /protein_id="ACI40924.1" FT /translation="MDNTSGQIFVSVNLSDESNTASTEVKTVSSEADRLEFLQKLNPFI FT IDALIRKTSYQGARFRARIIGVCVDCGRKHNKGLKNERKCKVNNTQSQNEVAHMLLHDP FT VKYLKKGKARAFSNAEMFAIDLVMYTKERQLAVDLAAEREKTRLARRHPMRSPEETPEH FT YKFGATAEAISPDINAVDVGDNEDTSSEYPVSLSVSGGVPREHHFI" FT 3'UTR 2870..3124 XX SQ Sequence 3124 BP; 869 A; 583 C; 753 G; 919 T; 0 other; atggacgacg aaacaaagaa attgaagaac aaaaacaagg aaacgaaaga agtcgacgat 60 gttgttgcag ctgaatcttc tttcggttcc gtaaacttac acatcgatcc gactctgata 120 gcgatgaacg atgtgcgtca gttgggtacc caacagaacg ctgctttgaa tagagatttg 180 tttcttacct tgaaagggaa gtatcctaac ttacctgaca aagataaaga ctttcactta 240 gctatgatgt tatatcgttt agcagttaag agttcatcat tacaaagcga cgatgatacc 300 acgggtatga cgtacactcg ggaaggtgtt gaagtggaat tatctgacaa actttggaca 360 gacgtcgtgt ttaactttaa gggtattggt aaccgtacaa acgcccttcg agtctggggt 420 agaactaacg atgcccttta tttggctttt tgtagacaga accgcaactt gagttatggt 480 ggacgtccgt tagacgcagg aattccagcc gggtatcact acctgtgtgc agatttcttg 540 accggagctg gcttgactga tttagaatgt gctgtgtaca tacaagctaa agagcaatta 600 ttaaagaagc gaggggctga tgaagtcata gttactaatg tcaggcagct tgggaaattt 660 aacacacgtt gatctgttgc gttccgaatc ccggtttctg tcgggatggt ggagtttcat 720 cgttaacgta ggtgatataa tcgtccggtt tgcgttacac gttcctaatg aagatatgct 780 gaatagcttt tcagctatat cgaattgtac gatcattgca gatggtagtg ctttactaaa 840 agacaatacc gtggttgatc gtttagaaaa catgaatcct ttggcttatt tgttaaaatt 900 agcgaaaacg actactacta tttgttttac catgtctaat aaggttcttt ttggtactac 960 taaatccgaa ccacttagtt gtttagctat cacgtcagat cgagttctat tcaaagttat 1020 tttgggtact aacgttgatg attctcgatg cggctgcagt atttggtttt acaacaacgg 1080 tacctatcaa aacggtttga tccgttgtaa taatctcgtc gctttgttta gcacgactta 1140 gacacgaagt ggccgttagg atttaattgc tgcaatgagt attcgacgtg tgtggttaaa 1200 ggttgtggct gtaatcacgg tattatggta cggtaaggaa ccttctatta gtgaaggtta 1260 caacgctctt atgaatgatg actttaagtt tatcgacacg catttttcaa acgtttctta 1320 tgctaagaaa tgttacgatt tggctaattt cgatttagac tttctacgcg tcgttgtcat 1380 tcctttaagt ggtagtacgg cgaatgaatc gcgtgctgat cgcgctaata tttcagaaat 1440 tgtcgaatcg catgtaagcg accgagacag aatgaacatt ttgttgcgta acaagcggat 1500 ccaaatccca tcgctcttac cttgcggtaa ctagagtcta ctcagtagta cgtctactag 1560 tataacgtac tgaacacttt agtaaaggat tttgttcgaa ctaaacaata tgcgagctta 1620 ctttagtgtt aacgattaca taagcctttt ggctaaggtt ggcgcagtcg tggaacgttt 1680 gtgcgatccc ggcgtaactc tcacggaagt gatggacgaa attaatgact ttaactcgtt 1740 cctcgctttg gtgcactcta tgaagtcaga catgaatgga gaccatcagg atggtcacca 1800 tgagatgggt gaacacaagt ctcggttgtt atgcaacata gaggcgagat tgcgagtgct 1860 tctcgacgtc ataagacgtc ggtttactcg cgaaaagctg ctctgtacca gcgcgacaga 1920 tgtcatgggc ttctttgtta tgaggtacat gagttccagc cacaccagct tcgagtcagt 1980 aatgagaacg gagttgaagt tagtagttaa ggtggtactg tcggatttgt cccgcacgca 2040 taaactggat tttagcgagc gagcttttgc ggcttatggt atccttttgc aaaagggtac 2100 tgtgtcgacc gtttgcggtc agtttgatat taatttagtc tctccgtctt gtgtgtaggt 2160 taatacgttt ctcagaacgt gtagttgtat taactaactt taattcgaac aagcttattg 2220 taaaagtctg cgagttacga tggataatac tagcggacaa attttcgttt ctgtgaacct 2280 ttccgacgaa agtaacacag cgagtactga agttaaaacc gtaagttcgg aagcggatcg 2340 cttggaattt ttacaaaaat taaatccctt tattatcgac gctttgatac ggaaaaccag 2400 ttatcagggt gctcgctttc gcgccagaat aataggagtg tgcgtggatt gtggtagaaa 2460 acacaacaag gggttgaaaa acgaacgtaa gtgtaaggtc aacaatacac agtctcagaa 2520 cgaggtggcg catatgttat tgcacgatcc cgttaagtat ttaaagaaag gaaaggctag 2580 agccttttct aacgcagaga tgtttgcgat cgatttggtt atgtacacca aggaaaggca 2640 attggcggtt gatttagccg ctgaaaggga gaagacgaga ctggctcgta gacacccaat 2700 gcgttctccg gaagaaactc cggaacatta taaattcggt gcgactgctg aggcaatttc 2760 gccggacatc aacgccgtag acgttggtga taacgaggac acttcgtcgg agtacccagt 2820 gagtctgagt gtatctggcg gagttccccg tgaacaccac ttcatctgat tgaagtggac 2880 ggaataagtt ctttacggaa ctttatgtcg ggttggtaaa aacccttatg atggtgatat 2940 atcactagac aataaccgga tgggtaaagt ctttaaaatg atcgagggga aaattaaccg 3000 tatcctctcg ttggtctaag ctcccacaga gtggtagtgg tctcaagtga ggcttaacgt 3060 atgcgtgaac caaagaagtt ctccttagag tgtgtgttgt ttacccaacg cactgtccct 3120 atgg 3124 //