ID FJ188473; SV 1; linear; genomic RNA; STD; VRL; 4193 BP. XX AC FJ188473; XX DT 03-NOV-2008 (Rel. 97, Created) DT 06-JAN-2017 (Rel. 131, Last updated, Version 2) XX DE Carrot mottle virus isolate Weddel, complete genome. XX KW . XX OS Carrot mottle virus OC Viruses; Riboviria; Tombusviridae; Calvusvirinae; Umbravirus. XX RN [1] RP 1-4193 RA Menzel W., Maiss E., Vetten H.J.; RT "Complete nucleotide sequence of a carrot isolate of Carrot mottle virus RT from Germany"; RL Unpublished. XX RN [2] RP 1-4193 RA Menzel W., Maiss E., Vetten H.J.; RT ; RL Submitted (05-SEP-2008) to the INSDC. RL Institut fuer Pflanzenkrankheiten und Pflanzenschutz, Leibniz Universitaet RL Hannover, Herrenhaeuser Strasse 2, Hannover 30419, Germany XX RN [3] RC Amino acid sequence updated by submitter RP 1-4193 RA Menzel W., Maiss E., Vetten H.J.; RT ; RL Submitted (04-JAN-2017) to the INSDC. RL Institut fuer Pflanzenkrankheiten und Pflanzenschutz, Leibniz Universitaet RL Hannover, Herrenhaeuser Strasse 2, Hannover 30419, Germany XX DR MD5; cb92e3a09fefba0ba915e0b2cab1b703. XX FH Key Location/Qualifiers FH FT source 1..4193 FT /organism="Carrot mottle virus" FT /host="Daucus carota" FT /lab_host="Nicotiana benthamiana" FT /isolate="Weddel" FT /mol_type="genomic RNA" FT /country="Germany" FT /collection_date="2005" FT /note="acronym: CMoV" FT /db_xref="taxon:68033" FT 5'UTR 1..22 FT CDS join(23..988,988..2634) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp" FT /db_xref="GOA:B6UQC5" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:B6UQC5" FT /protein_id="ACJ03580.2" FT /translation="MSFLKRILKHLDSQFSPAPGVYNRDVCAELYGAEWGVLITQERMT FT RALSVEHERWYTGRVETDVYIPVAQYVDPRDVEAEPTSQQGNSTGVDNPVNNCSGTVPT FT MPATEVIPVDGLGGRRVGVVPAPEGPIPCEGNVYAILRMADPTADASESSDDEEDTCCP FT AYIHAASNSVAEHSANAVPPPMEGVHPGTSPDGVPSSSSAVGISLAVDVTHVNTVDAST FT EMPTKVEGPDEGVSTSPLQEAGPSMAFVDASSVAMELRARFGYRSKNPANLELGGRVAR FT DILKGCGAVRSENYYLAQLAVQLWFAPTLLDLVLRGPVQDFLLGGVLVREGVCTSVIPK FT VLSPSLTIRPADRPRPVSRVSYQIDAVRPLADYGVHNNSLKNLVRGINERVFYIDNVGT FT KPVQPSGHGFSSIRDDIKAFRVVPWTMEQVVASYSGSQQTRYNTAMQSIYEKPFNRDDA FT RVSTFIKAEKINFTAKPDPAPRVIQPRDPRFNICFAKFIKPLEPMLYKALGRLYKHPCI FT AKGFNAFQTGDIIAKKWRSFRDPVCVGLDASRFDQHVSVAALKFTHKVYKRFVRDPEFD FT RLLQLMYTNKGRGTAKDGVVKYKVKGCRMSGDMDTALGNCVLMVPMTRELCKRLEIPHE FT LMDNGDDCIVIFDKEHLSKFQRAVKPYFKDLGFSMKVEAPVFKLEQIEFCQTQPVFDGT FT QWRMVRQVNSIAKDLCSVISWEQLLYWWDAIGTCGLALAGGIPVLHSFYKWLCRIGTRG FT SNVDKHPLFKCGMVYLSLGMDSASKRITPEGRLSFASAFGISPAMQVALEGIYDKMGNP FT KGSSVCQVAQSHDFNDWFTPDSRYKELDSGCQDLTTVESTAQVEFPIYGGLYLPHIEA" FT CDS 23..994 FT /codon_start=1 FT /product="replication-associated protein" FT /db_xref="UniProtKB/TrEMBL:A0A1L6UUR7" FT /protein_id="APS85016.1" FT /translation="MSFLKRILKHLDSQFSPAPGVYNRDVCAELYGAEWGVLITQERMT FT RALSVEHERWYTGRVETDVYIPVAQYVDPRDVEAEPTSQQGNSTGVDNPVNNCSGTVPT FT MPATEVIPVDGLGGRRVGVVPAPEGPIPCEGNVYAILRMADPTADASESSDDEEDTCCP FT AYIHAASNSVAEHSANAVPPPMEGVHPGTSPDGVPSSSSAVGISLAVDVTHVNTVDAST FT EMPTKVEGPDEGVSTSPLQEAGPSMAFVDASSVAMELRARFGYRSKNPANLELGGRVAR FT DILKGCGAVRSENYYLAQLAVQLWFAPTLLDLVLRGPVQDFC" FT CDS 2806..3603 FT /codon_start=1 FT /product="long-distance movement protein" FT /db_xref="UniProtKB/TrEMBL:B6UQC6" FT /protein_id="ACJ03579.1" FT /translation="MTFRIIYDGIEQDSIYNRRTHQPPARRNNSGRTARARAWDYGPSP FT WHQYAYPHSALPPPAPAYFEPLFQRPLAYQEDRGHAVYREARHSVRSARARHVAGTSSD FT LGARHRPPRSGTDRDGPEGVYTLVLGTPAGRFLSELFHSFERLSHECPSVLQSSNPVRG FT GTTGARGERLLSLLHVAASHRGEGAVLPADTTGGCGDTTSQHPIPTPGLEPAHAVPTRR FT DDERYGNHDQGQSIHALPAPHLCGKVHAVGGPCPTRESEVKYR" FT CDS 2828..3667 FT /codon_start=1 FT /product="cell-to-cell movement protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="UniProtKB/TrEMBL:B6UQC7" FT /protein_id="ACJ03578.1" FT /translation="MELSKTASTTGELINLLHGETTVDELRELGLGIMVPVRGTNTLTH FT TPLYPPRRQLTLSRFFSGRWRTKKTGGMLFIEKLVIVFVPHVPDTSPGQAVIWVHDTAL FT PGLEPIGTGQKVCIPLSSGPRLVAFYPNYSIPLSDSAMNAPRCFSLVTQLEGVRLEQGA FT SAFSLYSMWQPVIEERAQSYLPTQPEDVAIQRHNILSQLRDLSQRTRYLHAAMTNDMGT FT TTRGSQSMRYPPLTFAEKSTQLVARAPHGSLRSSIDSHHPDELGPEVHRDNNTTGQR" FT 3'UTR 3665..4193 XX SQ Sequence 4193 BP; 1024 A; 1129 C; 1137 G; 903 T; 0 other; gaaaatctta ctcatctcga tcatgagttt tctcaagcgc atattaaagc acttggattc 60 ccaatttagc cctgccccgg gcgtatacaa tagggatgtt tgcgctgaac tctacggcgc 120 agagtggggg gtgttgatca cccaggagag gatgacgcgt gctctttctg ttgagcatga 180 gcgttggtat accggtcgtg ttgagaccga cgtctacata ccagttgccc agtatgtaga 240 tccacgggat gtggaggctg aacccaccag ccaacaaggc aacagcaccg gggttgataa 300 ccccgtgaac aactgttctg gcaccgttcc caccatgccc gccactgaag tgattccagt 360 ggatggcctt ggtggtcgta gagtcggtgt ggtcccagca cctgagggtc ccattccttg 420 tgaggggaat gtgtacgcca tcctgcggat ggcggacccc actgctgacg cctcggagtc 480 aagtgacgac gaggaggaca cttgctgccc tgcatatatc catgcagcaa gtaactctgt 540 ggccgagcat agtgcgaatg ccgtgccacc tccgatggag ggtgtacacc ctgggactag 600 cccagatggt gtcccgtcat cgtcgagcgc cgttgggatt agcctggcgg ttgacgtaac 660 ccacgtcaac accgtggatg cctctacgga gatgccgacc aaggtcgaag gccctgacga 720 gggcgtcagc accagcccgt tacaagaggc tggaccctcc atggcgtttg tagacgccag 780 cagcgttgcc atggagctcc gggcgcggtt tggataccgc agcaaaaatc ccgccaacct 840 cgaattgggc gggagagtgg ccagggacat cctcaaggga tgtggggctg ttaggagcga 900 gaactattat ctcgcccaac tcgcggtgca actgtggttt gcgcccactc tcttggacct 960 ggtcctccgt ggaccggtcc aggatttttg ctagggggcg ttctggttcg ggagggggtg 1020 tgcacaagtg tcatacctaa agtattgtcc ccctccctaa ccatcaggcc ggctgatcgc 1080 ccccggcctg tgagtagagt gtcgtaccag attgacgcgg tacggcctct agctgactat 1140 ggagtacaca acaactccct caaaaacctc gtgcgtggaa taaacgagag agtgttttac 1200 atagacaacg tcggaaccaa gcctgtccaa ccgagcggac acggcttctc ctctatacga 1260 gacgatatta aagcgtttcg cgttgtccca tggaccatgg agcaggtagt cgcaagctac 1320 agtggtagcc aacagaccag gtacaacacc gccatgcagt ccatatatga aaaaccattc 1380 aacagggatg acgctagggt gtccactttt atcaaggcag agaagatcaa cttcacagcc 1440 aaaccggacc cagcgccccg tgtgatccag ccgagagatc caaggttcaa catatgcttt 1500 gcaaaattca tcaaaccctt ggaaccaatg ttgtacaaag ccttaggcag gctttataag 1560 cacccctgta tagcaaaggg gtttaacgct tttcagactg gtgatataat agccaagaaa 1620 tggcgctctt ttagagaccc agtctgtgtc ggattagatg catccaggtt tgaccaacac 1680 gttagtgtgg ccgctttgaa attcacgcac aaagtgtata agcggtttgt cagagatccg 1740 gagtttgacc gcctcctcca gttaatgtat acaaacaagg ggaggggcac cgccaaagat 1800 ggcgtggtca agtacaaagt caaaggatgt cggatgagtg gggatatgga cacggcctta 1860 ggcaactgcg ttcttatggt gccgatgacc agagaactat gcaagaggct cgagattccc 1920 catgaactaa tggacaatgg agatgactgt atagtaattt tcgataagga acatctctcc 1980 aaattccaga gagccgtcaa gccttacttt aaagatctcg gattcagtat gaaggtggaa 2040 gccccagtct ttaagctaga gcagatcgag ttttgccaga cccagcctgt atttgatggc 2100 acccaatgga gaatggtcag gcaggtaaac tctatagcta aagacttgtg tagtgtaata 2160 tcttgggaac aactactata ctggtgggat gcaatcggca cgtgtggatt ggccttagca 2220 ggaggcatac ctgtactcca cagcttttac aaatggctgt gtaggattgg cacaaggggg 2280 tctaatgttg ataaacaccc cctgtttaag tgcggaatgg tctacttgtc ccttgggatg 2340 gacagcgcct ccaaacgtat tactccggag ggtagactat cgttcgctag cgcttttggc 2400 atcagcccag ccatgcaagt ggctctggag ggcatttatg ataagatggg taaccctaag 2460 ggtagctcag tttgccaagt tgcgcagagt cacgacttca atgactggtt tacaccagac 2520 agtagataca aggagttgga ctcgggttgc caagacctaa caactgtaga gagtacagcg 2580 caggttgagt tccccattta cggtggactc tacctcccac acatcgaagc gtagcttgcg 2640 ggagtcgtcc cgcggttggg tgattcccaa ccagtcagcc agcccccacc gaatcttgca 2700 agaggggaag ccaagtgatt tggtcatgga ttgtggctga tccatgaggg gcctgccccc 2760 aattttcgtc aaccctgcag caggcaatgc aggaagggca attccatgac attcagaata 2820 atctacgatg gaattgagca agacagcatc tacaacagga gaactcatca acctcctgca 2880 cggagaaaca acagtggacg aactgcgaga gctagggctt gggattatgg tcccagtccg 2940 tggcaccaat acgcttaccc acactccgct ctaccccccc cggcgccagc ttactttgag 3000 ccgctttttc agcggccgtt ggcgtaccaa gaagaccggg ggcatgctgt ttatcgagaa 3060 gctcgtcata gtgttcgttc cgcacgtgcc agacacgtcg ccgggacaag cagtgatttg 3120 ggtgcacgac accgccctcc caggtctgga accgatcggg acgggccaga aggtgtgtat 3180 acccttgtcc tcgggacccc ggctggtcgc tttctatccg aactattcca ttcctttgag 3240 cgactcagcc atgaatgccc ctcggtgctt cagtctagta acccagttag agggggtacg 3300 actggagcaa ggggcgagcg ccttctctct ctactccatg tggcagccag tcatagagga 3360 gagggcgcag tcctacctgc cgacacaacc ggaggatgtg gcgatacaac gtcacaacat 3420 cctatcccaa ctccgggact tgagccagcg cacgcggtac ctacacgccg cgatgacgaa 3480 cgatatggga accacgacca ggggcagtca atccatgcgc tacccgcccc tcacctttgc 3540 ggaaaagtcc acgcagttgg tggcccgtgc cccacacggg agtctgaggt caagtatcga 3600 tagccaccac ccagatgaac tgggccctga ggtgcacagg gacaacaaca caaccggcca 3660 gcgctaagta tcgctgctgc cagatcccat tgatgtcggt cattaaatcg atctgccaat 3720 ggttaaatta acgaggagca tgtagtgtaa catgcagccg cccctagcct tactatccgt 3780 ggactccagg ccttccttcc tgcacaacac acggcgatgg cactgtcata gacaggttta 3840 atgggctgat cacccaagcg acataggtag cgggcccatg atacactaca cggcgattac 3900 gcccccctca accccggtgg agccaaagtg gcctaacaca cgaataaccc accttgggac 3960 caaacaaaat ctcctccccc cacatatagg tggttgccca tgtacatagt tcgggcggtc 4020 tgcacttggc agacgtagag agggtttccg atccttaaaa tcgggccgcg acacacggct 4080 tgtgtcactg agctacagta aaagcccgtc tcaactggcg gttaccaggc ccgggcgtat 4140 aatagggact ggagttgact ttgaaattag cgcagtcagc cggctgcgcg ccc 4193 //