ID FJ188472; SV 1; linear; genomic RNA; STD; VRL; 3957 BP. XX AC FJ188472; XX DT 03-NOV-2008 (Rel. 97, Created) DT 03-NOV-2008 (Rel. 97, Last updated, Version 1) XX DE Carrot mottle mimic virus isolate Bingenheim RNA-dependent RNA polymerase, DE long-distance movement protein, and cell-to-cell movement protein genes, DE complete cds. XX KW . XX OS Carrot mottle mimic virus OC Viruses; Riboviria; Tombusviridae; Calvusvirinae; Umbravirus. XX RN [1] RP 1-3957 RA Menzel W., Maiss E., Vetten H.J.; RT "Complete nucleotide sequence of a carrot isolate of Carrot mottle virus RT from Germany"; RL Unpublished. XX RN [2] RP 1-3957 RA Menzel W., Maiss E., Vetten H.J.; RT ; RL Submitted (05-SEP-2008) to the INSDC. RL Institut fuer Pflanzenkrankheiten und Pflanzenschutz, Leibniz Universitaet RL Hannover, Herrenhaeuser Strasse 2, Hannover 30419, Germany XX DR MD5; fe245ef8478fb104b5099f157c591720. XX FH Key Location/Qualifiers FH FT source 1..3957 FT /organism="Carrot mottle mimic virus" FT /host="Daucus carota" FT /isolate="Bingenheim" FT /mol_type="genomic RNA" FT /country="Germany" FT /collected_by="Roswitha Ulrich" FT /collection_date="2003" FT /db_xref="taxon:47736" FT CDS join(1..939,939..2642) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp" FT /db_xref="GOA:B6UQC2" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:B6UQC2" FT /protein_id="ACJ03575.1" FT /translation="MDPITKFLRMDFSPKDGVLTRRQCAERFDDTWGLLVTQARMTTAH FT TADMCAWYEGSRETNQYLPLEQFVDSRDASKEAEDKVDKKSTAPIPGAGGPAPNADGAL FT VVPPPVDGVEMPADSMQMSAPTGGAVVQPDNIEVAHWVYSLPSELEPLDEDVPVDQSAS FT TEAELELVRVLNNAIAVGDERVPTLAPIQEEPENEASAAPETAVGTAHQEGQTPNGDAP FT STGNAAVSSDAGNSTHASGEADASTEMPVTTEAAGPLMEEGPSMAHLTSYAVAMELRSR FT FGLRPASPANIELGARVAKEILKTAGARRQDNLLSGPAGSQVLPDANTPGCGVQHTHPG FT FLLGDVIARDGVCTKTVPIVLSPSLQIRPSARPRPVKRVSYQIDAVRPSADFGVHNNSL FT VNLVRGINERVFYTDNRGSLPVRPTPGAFDELTVDLKSFKIQAWSMEDVVNSYTGRQRA FT RYEQAMLSVLERPLERRDARVATFIKAEKINFSAKPDPAPRVIQPRDPRFNVVFAKYIK FT PLEPMLYKALGRLYKQPCVAKGFNAFQTGEIIRKKWDSFRNPVCVGLDASRFDQHVSVE FT ALKFTHSVYKRFNSSKEFVELLDQMYVNRGLGTCKDGLVKYKVKGCRMSGDMDTALGNC FT VLMVLMTRNLCLDLSIPHELMDNGDDCIVMFEKEHLQKFNAAVKPYFAALGFTMKVEAP FT VYQFEKVEFCQTQPVFDGTQWRMVRQIPSIAKDLCSVINWEQLESWWHAIGNCGQSLAG FT GMPVLGSFYRWLCRIGKDNTKVTAHPLYKCGMVNLSRGMDARDKPITTEGRLSFSLAFG FT ISIPMQLALEGIYDGLQKPGKVVPGACERRGFNDWFTPDVQCLNPSRSAVHTDEVVEEV FT DLLFPPPVY" FT CDS 2773..3570 FT /codon_start=1 FT /product="long-distance movement protein" FT /db_xref="InterPro:IPR006902" FT /db_xref="UniProtKB/TrEMBL:B6UQC3" FT /protein_id="ACJ03576.1" FT /translation="MGIVMNLQIQPINDGNNTSRNSRRTNQPSPRRGNTRQASGSWLWC FT PNTSPGLQYPNMYAALPPRTSTNSPGFLYPEMAHEAQWGPPVYREASGGILATRPGRNR FT GRGSIMAPRHGPIGPGTGRAKGVSEPQRGTAAGRFLSELLHSFERFGRECPAMFLPSDP FT DSRHPPEDWLQRLLPALNVESNHRREGAALPSNRAGVCAHCKALDKELVANTSTPAAIS FT ERRADEPARKESEGKPIHEAPSTGLCSKSHTSGEHCSDPTLHF" FT CDS 2813..3601 FT /codon_start=1 FT /product="cell-to-cell movement protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="UniProtKB/TrEMBL:B6UQC4" FT /protein_id="ACJ03577.1" FT /translation="MAIIQAGTREELINLLHGAGIQDKLRDLGFGVLTPARGCNTLTCT FT PLYPPEHQRTVRDFFTRRWRTKRSGGLLFIEKLVVAFLPHVPDGTAGEVVLWLHDTALS FT DLEPVGQKVSLSLSGGPRLVAFYPNYSIPLSDSAENAPRCFSLVTQIQGIRLKTGSSAF FT SLLSMWNPTIGERAQHYQATEPECVPIVRHSIRSSLQTLVLQRQYLNAALTNPLGRSQR FT VSQSMRHPPLDYALSPTRVASTVQIPPSTSSDTKTHRSLE" XX SQ Sequence 3957 BP; 981 A; 1020 C; 1070 G; 886 T; 0 other; atggatccca taactaagtt cttgcgaatg gacttctcgc ccaaagatgg cgtcctaacc 60 agacgccaat gtgctgaacg cttcgatgac acctggggac tcctagttac ccaggcgaga 120 atgaccacag cgcacacagc ggatatgtgt gcatggtacg aggggtcccg ggagaccaac 180 cagtaccttc ccctagagca gttcgtggac tccagggatg ccagcaagga agctgaagac 240 aaggtggaca aaaagtccac agcccctatc cccggtgctg gtggtcccgc acccaatgct 300 gatggggctc ttgtagtgcc tccccctgta gacggggttg agatgcctgc agatagcatg 360 cagatgagcg ccccaactgg gggtgctgtg gtgcagcctg acaacattga ggttgcccac 420 tgggtgtatt cactgcccag cgaactggag cctctcgatg aggatgtacc agtagaccag 480 tctgccagta cggaggcaga acttgagttg gtgcgggttt tgaacaacgc cattgctgtc 540 ggggacgaga gagtacccac tcttgcccca attcaggagg agcccgaaaa cgaggcatca 600 gcggcccctg agacagccgt aggaaccgcc caccaagagg gccagacccc caatggggat 660 gctcccagta cagggaatgc cgctgttagt agcgatgcgg gtaactcaac ccatgccagc 720 ggagaagctg atgcctctac ggagatgccc gtgacaacgg aagcagcagg gcccctcatg 780 gaggaggggc catccatggc ccacctaacg agttatgcag tggccatgga actcaggtcc 840 cgatttggcc tgcgaccagc cagtcccgct aatatagaat tgggggcgag agtcgctaag 900 gaaatcttga agaccgctgg ggccagacgc caagataact attatctggc ccagcaggca 960 gtcaagttct tcctgacgcc aacactcctg gatgtggtgt acagcacacc catccgggat 1020 ttttactagg ggacgttatt gcacgggatg gggtatgcac taaaactgtg cctatcgtat 1080 taagcccctc cctgcaaatc aggccgtccg cacgtccccg gcctgttaaa agggtttctt 1140 accagattga cgcggtaaga ccctctgctg attttggagt tcacaacaac tccttggtga 1200 atctcgtgag aggtataaac gagagggtat tctatactga caaccgtggc tctctacctg 1260 taagacccac cccaggtgct tttgacgaac ttaccgtgga cctgaagtcg tttaagattc 1320 aagcttggtc catggaggat gtcgtcaata gttacaccgg gagacaaagg gccaggtatg 1380 agcaagcgat gttgtcggtc ctagagagac ccctagaacg gagggatgct agggtggcaa 1440 cttttatcaa agccgagaag attaacttct ccgccaagcc agaccccgct ccccgagtca 1500 ttcaaccccg agatcccagg ttcaatgtgg tattcgcgaa atacataaag ccacttgaac 1560 caatgttgta taaagctctg ggcaggttgt acaaacaacc atgtgtcgcc aagggattta 1620 atgccttcca aactggtgaa ataatcagaa agaagtggga ttcttttaga aatccagttt 1680 gtgttggctt ggacgctagc cgattcgacc aacatgtatc agtcgaagct ctgaagttca 1740 cgcactctgt ctataagcgg ttcaactcct ccaaagagtt tgtcgagcta ttagatcaga 1800 tgtatgttaa tcgtggactt ggtacatgta aagatggtct agtcaagtat aaggttaagg 1860 gttgcagaat gagcggtgat atggataccg ccttgggcaa ttgtgttctc atggtcttga 1920 tgacacggaa tttgtgtctc gacctgtcca tcccccatga gttgatggac aacggtgacg 1980 attgcatcgt catgtttgag aaggaacact tgcaaaagtt taatgctgct gttaaacctt 2040 acttcgcagc gttagggttc accatgaagg ttgaggcccc tgtttaccaa tttgagaagg 2100 ttgaattctg ccaaacccag ccagtctttg acggcaccca atggagaatg gttaggcaga 2160 tccctagcat cgctaaagac ctatgcagcg tgatcaattg ggaacagtta gaatcttggt 2220 ggcatgcaat aggaaactgc ggccagagtt tggcgggagg aatgccagtt ttaggcagtt 2280 tctaccgttg gttgtgtaga attggaaagg acaacactaa agtgaccgcc cacccattgt 2340 acaagtgtgg catggtcaac ctttcccgag gtatggatgc gcgcgacaag cccatcacaa 2400 ctgagggacg ccttagtttt agccttgctt ttggtatatc tatccccatg caattagcat 2460 tggagggcat ttatgacgga ttgcagaagc caggcaaggt agtcccgggg gcttgtgaaa 2520 gacgtggatt taatgactgg tttacaccag atgttcagtg tcttaaccca tccagatctg 2580 ctgtccacac cgacgaggtt gttgaagagg ttgatctcct cttccctcct cccgtctatt 2640 agcctgatga ggctgtcacg tagctagtac caggttgcaa tactagagcg ttagtcctgg 2700 ggcagcccct atggtggggg gttgtcaaac ctagataact cagtcaccct accctctact 2760 aggctctgga ggatgggcat cgtcatgaac ttacagatac aaccgatcaa cgatggcaat 2820 aatacaagca ggaactcgag aagaactaat caaccttctc cacggcgcgg gaatacaaga 2880 caagcttcgg gatcttggct ttggtgtcct aacaccagcc cggggctgca ataccctaac 2940 atgtacgccg ctttaccccc cagaacatca acgaacagtc cgggatttct ttacccggag 3000 atggcgcacg aagcgcagtg ggggcctcct gtttatagag aagctagtgg tggcattctt 3060 gccacacgtc ccggacggaa ccgcgggcga ggtagtatta tggctccacg acacggccct 3120 atcggacctg gaaccggtag ggcaaaaggt gtctctgagc ctcagcgggg gaccgcggct 3180 ggtcgctttc tatccgaatt actccattcc tttgagcgat tcggcagaga atgccccgcg 3240 atgtttctcc ctagtgaccc agattcaagg catccgcctg aagactggct ccagcgcctt 3300 ctccctgctc tcaatgtgga atccaaccat aggagagagg gcgcagcact accaagcaac 3360 agagccggag tgtgtgccca ttgtaaggca ctcgataagg agctcgttgc aaacactagt 3420 actccagcgg caatatctga acgccgcgct gacgaacccg ctaggaagga gtcagagggt 3480 aagccaatcc atgaggcacc ctccactgga ctatgctcta agtcccacac gagtggcgag 3540 cactgttcag atcccaccct ccacttctag tgacaccaaa acccacagga gccttgagta 3600 agctccgtgg ggtatctgta ctcacggcac ccgggttgta gatagtttcc cccgcgtagc 3660 cagatcccat ggatgtcggt catttgcttg tcctgcccat ggtttaatag aagggaattg 3720 cgcgctcgat aacatcggaa cagaaggtcc aatcgccctg gaatgggaag gaggcgaggc 3780 attgcaatgc acgccgagac ttcaggggtg tggctggtta ccacacccgg tataacttcg 3840 tgttcagtga atgaattagc gagcaattag gtgcgccatg agcctcgtgg aattggtagc 3900 accccccttg acaatgccgt gagtacagat accccacagg tggcagctgg attgtct 3957 //