ID FJ188471; SV 1; linear; genomic RNA; STD; VRL; 3655 BP. XX AC FJ188471; XX DT 03-NOV-2008 (Rel. 97, Created) DT 03-NOV-2008 (Rel. 97, Last updated, Version 1) XX DE Carrot mottle mimic virus isolate California RNA-dependent RNA polymerase, DE long-distance movement protein, and cell-to-cell movement protein genes, DE complete cds. XX KW . XX OS Carrot mottle mimic virus OC Viruses; Riboviria; Tombusviridae; Calvusvirinae; Umbravirus. XX RN [1] RP 1-3655 RA Menzel W., Maiss E., Vetten H.J.; RT "Complete nucleotide sequence of a carrot isolate of Carrot mottle virus RT from Germany"; RL Unpublished. XX RN [2] RP 1-3655 RA Menzel W., Maiss E., Vetten H.J.; RT ; RL Submitted (05-SEP-2008) to the INSDC. RL Institut fuer Pflanzenkrankheiten und Pflanzenschutz, Leibniz Universitaet RL Hannover, Herrenhaeuser Strasse 2, Hannover 30419, Germany XX DR MD5; 258121e8d69a1aa94322c3b819f239f6. XX FH Key Location/Qualifiers FH FT source 1..3655 FT /organism="Carrot mottle mimic virus" FT /host="Daucus carota" FT /isolate="California" FT /mol_type="genomic RNA" FT /country="USA" FT /collected_by="B.W. Falk" FT /db_xref="taxon:47736" FT CDS join(1..939,939..2648) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA polymerase" FT /note="RdRp" FT /db_xref="GOA:B6UQB9" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:B6UQB9" FT /protein_id="ACJ03572.1" FT /translation="MDHITKFLRMDFSPKDGVLTRRQCAERFDDTWGLLVTQARMTTAH FT TADMCAWYEGSRETNQYLPLEQFVDSRDASKEAEDKVDKVSSPLTRSCGGTMVNADGGL FT VDNPLPTDRDEMPAASMQMNAPSGGVAVASVNSEVARWVFALPRELDDPVMETPVNPSA FT PTEADRELTRVLNNTVAVGDIASALSTIQEEPQHEAIAVPGTAVGVVHQEDPAPVEGSP FT STRDAALEGDAGHSAHAGDDTDASAEMPTTVEAAGPLMEEGPSMAHLTSYTVAMELRSR FT FGLRPASPANIELGARVAREILKTAGARRQDNLLSSPAGSQVFPDADTPGCGVQHTHPG FT FLLGDVIARDGVCTKTVPIILSPSLHIRPSARPRPVKRVSYQIDAVRPSADFGVHNNSL FT VNLVRGINERVFYTDNRGSLPVRPTPGSFDRLTVDIKHFKINAWSMEDVVNSYTGRQRA FT RYEQAMLSIMERPLERRDARVSTFIKAEKINFSAKPDPAPRVIQPRDPRFNVVFAKYIK FT PLEPMLYKALGRLYKQPCVAKGFNAFQTGEIIRKKWDSFRNPVCVGLDASRFDQHVSVE FT ALKFTHSVYKRFNSSKEFVDLLNQMYVNRGLGTCKDGLVKYKVKGCRMSGDMDTALGNC FT VLMVLMTRNLCLDLSIPHELMDNGDDCIVIFEKEHLQRFNAAVKPYFAALGFTMKVEAP FT VYQFEKVEFCQTQPVFDGTQWRMVRQIPSIAKDLCSVIDWEQLESWWHAIGNCGQSLAG FT GLPVFGSFYRWLCRIGKDNTKVTEHPLYKCGMVNLSRGMDARDKPITTEGRLSFSLAFG FT LSIPMQIALEGIYDNLKKPGKVVPGACERRGFNDWFIPDAQCLNPSRSAVHTDEVEVEV FT DFLYPPPVSAC" FT CDS 2770..3567 FT /codon_start=1 FT /product="long-distance movement protein" FT /db_xref="InterPro:IPR006902" FT /db_xref="UniProtKB/TrEMBL:B6UQC0" FT /protein_id="ACJ03573.1" FT /translation="MGIVMNLQIQPIGDGNNSSRNSRRPNQPSPRRRDSRQASGSWLWC FT PNTSPRQQYPYMYATIPPRAPTNGPGFLHPEMAHEAQWGPPVYREASGGFPATRARRNR FT GRGSAVAPRYGPVGPGTGRPQSVTEPQRGTAAGRFLSELLYSFERFGRECPAMFLPSDP FT ASRHPPEDWLQRLLPALNVEPSHRREGPTLPSNRAGVCAHSKALDKELVADTSTTAAVS FT ERRADEPTRKEPEGQPITEAPSTGLCSKPHTRGEQCSDPTLHF" FT CDS 2810..3598 FT /codon_start=1 FT /product="cell-to-cell movement protein" FT /db_xref="InterPro:IPR000603" FT /db_xref="UniProtKB/TrEMBL:Q66129" FT /protein_id="ACJ03574.1" FT /translation="MAIIQAGTREDLINLLHGAGIQDKLRDLGFGVLTPARGSNTLTCT FT PLYPPEHQRTVRDFFTRKWRTKRSGGLLFIEKLVVAFLPHVPDGTAGEVVLWLHDTALS FT DLEPVGRKVSLSLSGGPRLVAFYPNYSIPLSDSAESAPRCFSLVTQLQGIRLKTGSSAF FT SLLSMWNPVIGEKAQHYQATEPECVPIVRHSIRSSLQTLALQRQYLNAALTNPLGRSQR FT GSQSLRHPPLDYALSPTREASSVQIPPSTSSATKAHQYLE" XX SQ Sequence 3655 BP; 913 A; 938 C; 980 G; 824 T; 0 other; atggatcaca taactaagtt cttgcgaatg gatttctcgc ccaaagatgg cgtcctaacc 60 agacgccaat gtgctgaacg cttcgatgac acctggggac tcctagttac ccaggcgaga 120 atgaccacag cgcacacagc ggatatgtgt gcatggtacg aggggtcccg ggagaccaac 180 cagtaccttc ccctagagca gttcgtggac tccagggatg ccagcaagga agctgaagac 240 aaggtggaca aagtgtcctc tcccctcacc cgaagctgtg gtggtaccat ggtaaatgct 300 gatgggggcc ttgtggataa ccctctccca accgataggg atgagatgcc tgcagctagc 360 atgcagatga acgccccatc gggtggcgtt gccgtggcct ctgttaatag tgaggtcgcg 420 cgttgggtat ttgctctacc ccgtgaactg gatgaccctg ttatggagac tccagtaaac 480 ccgtctgctc ctacagaggc agatcgagag ttgacgcggg tattgaataa taccgttgct 540 gtcggggaca ttgcatcggc actgtccacc atccaggaag agccacaaca cgaggcaatt 600 gctgtacctg ggacagccgt aggagtggtc caccaagagg acccagcccc agtagagggc 660 tcccctagta caagggatgc cgccctggaa ggcgatgcgg gccactcagc ccatgccggt 720 gatgataccg atgcctctgc ggagatgccc acgaccgtgg aagcagcagg gcccctaatg 780 gaagaggggc catccatggc tcacttaacg agctacacag tagccatgga actcaggtct 840 agattcggcc tgcgaccggc cagccccgct aatatagaat taggggcgcg agttgctagg 900 gagatcttga agaccgctgg ggctagacgc caagataact attatctagc ccagcaggca 960 gtcaagtttt tcctgacgcc gacactcctg gatgtggtgt acagcacacc catccgggat 1020 ttttattagg ggacgtcatt gcgagggatg gggtgtgtac taaaacagta cctatcatat 1080 tgagcccctc cttgcacatc aggccgtccg cacgtccccg gcctgttaaa agggtatctt 1140 accagattga cgcggtaagg ccctctgctg attttggagt tcacaacaac tccttggtga 1200 atctcgtgag gggaataaat gagcgagtgt tctacactga taatcgtggc tctcttcctg 1260 ttagacccac cccaggtagc tttgaccgtt tgaccgtcga cattaagcac ttcaaaatta 1320 atgcttggtc catggaagac gttgtcaaca gttataccgg gagacaaagg gcaaggtatg 1380 agcaagcgat gttatctatc atggaacgac cgctagaacg gagggatgct agggtgtcta 1440 catttataaa agcggagaag atcaactttt ctgccaagcc agacccagct ccccgagtca 1500 tccaaccccg agatcccagg ttcaatgtgg tattcgcaaa atatattaaa ccacttgagc 1560 caatgttgta caaagctctg ggcaggctgt ataaacaacc gtgtgtcgcc aagggattta 1620 atgcctttca aactggtgag ataattagga agaagtggga ttcattccga aatccagttt 1680 gtgtagggct agacgctagc cgatttgacc agcatgtgtc agttgaagcc ttaaagttca 1740 cacattctgt gtacaagcgg ttcaactcct ctaaggagtt tgtggacctg cttaaccaga 1800 tgtacgttaa tcgtggactt ggcacttgca aagatggtct tgtcaagtat aaggtgaagg 1860 gttgcagaat gagcggtgat atggataccg ccctgggcaa ttgtgttctc atggtcttaa 1920 tgacacgcaa tttgtgttta gacctgtcca tcccccatga gttgatggac aatggtgacg 1980 attgcatcgt catttttgag aaggagcact tgcaaaggtt caatgcagct gttaagccat 2040 acttcgcagc gttgggcttc accatgaaag tagaagcccc tgtttaccaa tttgagaaag 2100 tcgaattttg ccaaacccag ccagtatttg atggcaccca atggagaatg gttaggcaaa 2160 ttcctagtat cgctaaggac ctatgtagcg taatcgattg ggaacagcta gaatcttggt 2220 ggcacgcgat aggaaactgc ggccagagct tggcgggggg attgccagtg tttggcagtt 2280 tttaccgttg gttgtgtaga atcgggaaag ataatactaa agtgaccgag catccactgt 2340 acaaatgcgg catggtcaac ctttcccgtg gaatggatgc gcgagataag cccatcacaa 2400 cagagggacg ccttagcttc agcctagcgt ttggattgtc cattccaatg caaatagcat 2460 tggagggtat atatgacaat cttaagaaac caggcaaggt agtcccgggg gcttgtgaaa 2520 ggcgaggatt taatgactgg tttataccag atgctcagtg ccttaaccca tccagatctg 2580 cagtccacac cgacgaggtt gaggtggagg ttgatttcct ctaccctcct cccgtttccg 2640 cctgttgagg cagtcacgta gctagtacca ggttgcaata ctagagcgtt agtcctgggg 2700 cgtccctttg gtggagggcc gtcaaaccta gataactcag tcacctaatc ctccactagg 2760 ctctggagga tgggcatcgt catgaactta cagatacaac caataggcga tggcaataat 2820 tcaagcagga actcgagaag acctaatcaa ccttctccac ggcgcaggga ttcaagacaa 2880 gcttcgggat cttggctttg gtgtcctaac accagcccga ggcagcaata cccttacatg 2940 tacgccacta taccccccag agcaccaacg aacggtccgg gatttcttca cccggaaatg 3000 gcgcacgaag cgcagtgggg gcctcctgtt tatagagaag ctagtggtgg ctttcctgcc 3060 acacgtgccc gacggaaccg cgggcgaggt agtgctgtgg ctccacgata cggccctgtc 3120 ggacctggaa ccggtaggcc gcaaagtgtc actgagcctc agcgggggac cgcggctggt 3180 cgctttctat ccgaattact ctattccttt gagcgattcg gcagagagtg ccccgcgatg 3240 tttctcccta gtgacccagc ttcaaggcat ccgcctgaag actggctcca gcgccttctc 3300 cctgctctca atgtggaacc cagtcatagg agagaaggcc caacactacc aagcaacaga 3360 gccggagtgt gtgcccatag taaggcactc gataaggagc tcgttgcaga cactagcact 3420 acagcggcag tatctgaacg ccgcgctgac gaacccacta ggaaggagcc agaggggcag 3480 ccaatcactg aggcaccctc cactggacta tgctctaagc cccacacgag aggcgagcag 3540 tgttcagatc ccaccctcca cttctagtgc caccaaagcc caccaatacc ttgagtaagt 3600 attggtgcgt atctgtactc acggcacccg ggttgtagat agtttccccc gcgta 3655 //