ID FJ183385; SV 1; linear; genomic RNA; STD; VRL; 3178 BP. XX AC FJ183385; XX DT 01-MAY-2009 (Rel. 100, Created) DT 03-JUN-2009 (Rel. 101, Last updated, Version 2) XX DE Equine encephalosis virus isolate HS103/06 VP2 gene, complete cds. XX KW . XX OS Equine encephalosis virus OC Viruses; Riboviria; Reoviridae; Sedoreovirinae; Orbivirus. XX RN [1] RP 1-3178 RX DOI; 10.1099/vir.0.009381-0. RX PUBMED; 19264638. RA Potgieter A.C., Page N.A., Liebenberg J., Wright I.M., Landt O., RA van Dijk A.A.; RT "Improved strategies for sequence-independent amplification and sequencing RT of viral double-stranded RNA genomes"; RL J. Gen. Virol. 90(Pt 6):1423-1432(2009). XX RN [2] RP 1-3178 RA Potgieter A.C., Wright I.M., van der Sluis R.; RT ; RL Submitted (05-SEP-2008) to the INSDC. RL Virology, ARC-Onderstepoort Veterinary Institute, 100 Old Soutpan Road, RL Pretoria, Gauteng 0110, South Africa XX DR MD5; 88782a5bfca36ea08bb757ed2c2b737e. XX FH Key Location/Qualifiers FH FT source 1..3178 FT /organism="Equine encephalosis virus" FT /isolate="HS103/06" FT /serotype="Bryanston" FT /mol_type="genomic RNA" FT /country="South Africa" FT /db_xref="taxon:201490" FT CDS 19..3147 FT /codon_start=1 FT /product="VP2" FT /db_xref="UniProtKB/TrEMBL:C3TUQ5" FT /protein_id="ACJ06235.1" FT /translation="MDFRVLICYNVNGASSLSDDDLETYEDESTIILRVNNKYLVDINS FT QLDQQEDIFLLGGDVPNDNTFAGNNAWPKNLTSFDLFDPTDSITEVLKKTKLGVETTTS FT QLVSIRYGKIAKDAKRLKGVKNQGALIKGTYVEMARAEEQLAKMCEIDQHRDVMTRDIM FT RGTGNRIKIRTLIGEINLPGWLEGTYSLSRESKHLEVCDWSRHCFTLYEMGVLFLYESF FT KYIDTKTIGEDILSKASPEMASTVRGLIVGKFQRERFKQLRSLSIVPKCTGGADYSVPE FT GMLYELLSVYMKILEVSSEGFLREERGKIVDIVHAHVPQDRRNFVSFKATGASHMLQAI FT NNVLNVRDNILGIARTHRTLGGFYFATDTREYKEWMAEMGQRGFSAEHYADWIMRCDST FT KLEEFFTLKMNFANFLRWWKVIPRDFKFSAVYERTGVRLSGKKLERHFDDVFVWFKDNV FT RPLIHRGEDGKLFSKIVELTIKSAYDGIPHCKPESLVSFLKALSFCVSGEKIDDQFRAV FT TVSASEEDGDGLFWSARQVYDVPTREGILLSAESLEGCEEYYGKIIEDPMYEAASEDEV FT LKGETDKVHHLFPKDKIGQDWIVVPRFIGYSYKLYRARVRGEADVRVGFAEALLSPQCQ FT YLRHGIVVKGGCRQARKRVVDRSYTNRIRLETPNEREGNHPCLVAKLVGAANRGVGSIL FT VFYFARHLKMDQLLVDLINVYLSATNRFHDDFVRKLRSEWPQHETTFREAIRVWKRTGV FT LRLQDDLRMMMLTPGNCYALDVKIEDALMKYFGVRVGLDSLVESMKTVKKVSQLFKHVS FT DLMSFKGTGVDYYVWNAMIVITLILCPDFLESPKTIPIFTATNKKVVAIPVLMKDYTLG FT NVAMNAVRYLDTVAPPQLLSRELSSSEIKMLYSLADVYLDSPDHIKSPRGLEGIYTPFQ FT SWVGMGCLGIREKFEIMVPTSKPTQSHFVVTLSSGDVSESDAHKVRAALDEGTGMGTLD FT VRIGDDGVIRVTDSLPKVKRYKHLTHNEMLDGNIIRLDTASRFDTYMAAKILN" XX SQ Sequence 3178 BP; 948 A; 556 C; 862 G; 812 T; 0 other; gtttatttga tcgtggagat ggattttcgt gtgctaattt gttacaatgt caacggcgca 60 agttcgctta gtgatgatga tttggaaaca tatgaagatg agagcacaat tattctaaga 120 gtaaataaca agtatttagt tgatataaac tcacagctag atcagcaaga agatatattc 180 ttattagggg gagacgtacc caacgacaat acattcgcag gcaataacgc gtggcctaag 240 aatctaacca gttttgattt gttcgacccg accgattcta taacagaagt cttaaagaag 300 acaaaacttg gggtagagac gacaacatcg cagttggttt ctataagata cgggaaaata 360 gctaaagatg caaagagatt aaaaggagtg aaaaaccaag gtgctctgat taagggcaca 420 tacgtagaaa tggcgagagc agaggagcaa ttggcgaaaa tgtgtgaaat cgatcaacat 480 agagatgtga tgacgcgtga cataatgagg gggacgggga acaggatcaa aattagaaca 540 ttgattggtg agattaattt accaggatgg ctagagggaa catatagctt atcaagagaa 600 tccaaacatc tcgaggtgtg tgattggagc aggcattgtt tcaccctata tgagatggga 660 gtgctgtttc tgtatgaaag ttttaagtat atagatacaa aaacgattgg cgaagatata 720 ttaagcaagg ccagtcccga gatggcatcg accgtcagag gtttgatagt agggaaattc 780 caacgggaga gatttaaaca gctacgatca ttatccatcg taccaaaatg tacggggggt 840 gcggactaca gtgtgccgga gggaatgtta tatgaacttc tttctgtata tatgaaaata 900 ttggaggttt caagcgaagg atttttacgc gaagagagag gcaagatcgt cgatatcgtg 960 cacgcacacg ttccacagga caggcggaac ttcgtatctt tcaaagccac tggagcgtca 1020 catatgttac aagctattaa taatgtgttg aatgtgagag acaacatcct gggtatcgca 1080 agaacgcata gaacattggg gggattttat ttcgccacag acacccgtga atacaaagaa 1140 tggatggccg agatgggtca acgaggattt agcgccgaac attacgccga ttggattatg 1200 agatgtgaca gtacaaaatt ggaggagttt ttcaccttaa agatgaactt tgccaatttc 1260 ctcagatggt ggaaggtaat ccctagggat tttaagtttt ctgcggtcta cgagcgaacg 1320 ggggttcgcc tttctggcaa aaaattggag agacactttg acgatgtatt cgtatggttt 1380 aaggataacg tgcggcctct aattcatcgg ggtgaagatg gaaaactttt ctctaaaatt 1440 gtggagttga cgatcaaatc ggcatatgat ggaatacccc actgcaaacc ggagtcccta 1500 gtatcgtttc ttaaagcttt gtctttctgt gtctcagggg agaagatcga cgaccaattc 1560 agagctgtaa cggtcagcgc ctcggaggag gacggcgacg gtctcttctg gagcgctcgc 1620 caagtttatg acgtgcccac gcgtgagggg atactattgt cagcggagag tttggagggg 1680 tgcgaagaat actacggtaa aattattgaa gacccgatgt atgaggcggc ctcagaagat 1740 gaggtactga aaggtgagac tgataaagta catcacttat ttccaaaaga taaaatcggc 1800 caagattgga tagtggtgcc aaggtttatc ggctattcgt acaaacttta ccgagctcgc 1860 gtgcgagggg aagcggacgt cagagtagga ttcgcggaag ctcttctatc tcctcaatgc 1920 caatatttga ggcacggaat tgtggttaag ggggggtgcc gtcaggcgcg aaagagagta 1980 gttgatcggt cgtacacgaa taggataaga ctggagacgc ccaacgaacg ggagggaaac 2040 catccatgtt tggtagctaa gttagttggg gcagcgaata gaggcgttgg gtcgatatta 2100 gtgttttact ttgctaggca tctcaagatg gatcagttgc tggttgattt aattaacgtc 2160 tacctgagtg cgacgaacag gttccatgat gatttcgtta ggaaactacg aagtgagtgg 2220 ccacaacatg agacgacgtt cagggaagcc atacgtgtat ggaaacgtac aggggtgctg 2280 cggcttcaag atgacctcag gatgatgatg ttaacgccgg gaaattgtta tgcgttagac 2340 gttaaaattg aagatgctct aatgaagtat ttcggcgtga gagtagggtt ggattcatta 2400 gtagaatcaa tgaagactgt caagaaagta tcgcagctgt ttaaacatgt ttctgatctt 2460 atgtctttca agggaacggg tgttgattat tacgtatgga acgcaatgat tgtcattacg 2520 ctgattttat gccccgattt tttagagtca cccaagacga taccgatatt cacggcgaca 2580 aacaaaaaag tcgtggcgat accagtatta atgaaggatt acaccctggg taacgtagcg 2640 atgaatgcgg tgaggtatct ggacactgta gcgcctccgc aacttttaag ccgagaattg 2700 tcgtcatcgg agatcaagat gttatactcg ctcgccgacg tatacttaga ttcgcccgac 2760 catattaaat cgcctcgggg tttagaaggg atatacaccc catttcagtc gtgggtgggg 2820 atgggctgtt tgggcatccg tgagaaattt gagataatgg ttccaacctc aaagccgacg 2880 cagtcccatt ttgtcgtgac gctaagtagt ggggacgtaa gcgaatcaga tgcacataag 2940 gtacgagcag cgcttgatga gggaacgggt atgggaacat tagatgttag gattggcgat 3000 gacggcgtta ttagagttac agacagtcta ccgaaagtga aaaggtataa gcatttgaca 3060 cacaatgaga tgttggatgg gaacatcata cgattggaca cggcgtcaag atttgataca 3120 tatatggctg cgaaaattct aaactagggt gtcacctagt accacgatct ggtgttac 3178 //