ID FJ183384; SV 1; linear; genomic RNA; STD; VRL; 3963 BP. XX AC FJ183384; XX DT 01-MAY-2009 (Rel. 100, Created) DT 03-JUN-2009 (Rel. 101, Last updated, Version 2) XX DE Equine encephalosis virus isolate HS103/06 VP1 gene, complete cds. XX KW . XX OS Equine encephalosis virus OC Viruses; Riboviria; Reoviridae; Sedoreovirinae; Orbivirus. XX RN [1] RP 1-3963 RX DOI; 10.1099/vir.0.009381-0. RX PUBMED; 19264638. RA Potgieter A.C., Page N.A., Liebenberg J., Wright I.M., Landt O., RA van Dijk A.A.; RT "Improved strategies for sequence-independent amplification and sequencing RT of viral double-stranded RNA genomes"; RL J. Gen. Virol. 90(Pt 6):1423-1432(2009). XX RN [2] RP 1-3963 RA Potgieter A.C., Wright I.M., van der Sluis R.; RT ; RL Submitted (05-SEP-2008) to the INSDC. RL Virology, ARC-Onderstepoort Veterinary Institute, 100 Old Soutpan Road, RL Pretoria, Gauteng 0110, South Africa XX DR MD5; 4194a99baff16942bd00db5ef4ba3166. DR EuropePMC; PMC3741287; 23950952. XX FH Key Location/Qualifiers FH FT source 1..3963 FT /organism="Equine encephalosis virus" FT /isolate="HS103/06" FT /serotype="Bryanston" FT /mol_type="genomic RNA" FT /country="South Africa" FT /db_xref="taxon:201490" FT CDS 13..3936 FT /codon_start=1 FT /product="VP1" FT /db_xref="GOA:C3TUQ4" FT /db_xref="InterPro:IPR007097" FT /db_xref="InterPro:IPR008723" FT /db_xref="UniProtKB/TrEMBL:C3TUQ4" FT /protein_id="ACJ06234.1" FT /translation="MVITVDGAEVVREALNRIFKYGAFQGDTPVYEYYRYSSRIRQLRR FT KHGAKYSISDAEMERRRDRGELSLYGLQVITENEVTQILKLPTHDQGVEIVDIFYNSVL FT PCDELEPDEEFLRNYRVEENHGLQTFISYRASQEMQVFGDLPLNFWCAFIESASSYFEH FT EPLGLTVLRQITCDKGVLFHQNSRDLSQIEDISYTYSGPLLFEMCITESILEYNMVCRM FT REEKISDLQYGHDSIDPFEIIREFFIMCLPHPKKINNMLRSPYSWMVKTWGICCAEQVI FT LDSRGGPDRNSKDVFYTGYRKVVNQYGPILLKTRFFKDSLKLNREKVEEAIKYSQCLGG FT HRRSLNIFRSMLKKPYTTEFDPSNVRHVMLASLLLSIQTITGYGRAWVKNESSDVESQM FT KPNDNNLISRVSEYTGRNFYNAYAEAKEAGEEIVKPEDMHTSLLRLAKNTSSGFSTEIV FT VNKRFGPGISASSFEKIKISSRIKALVIFTKGHEVFTPSNLVQKYNTVEYYQTKGSRDV FT PIKSTRTIYAINLSILMPQLLLTLPLNEYFAKVGGSTLPDYKRLGGKVIVGDLEATGSR FT TMDAADCFRNSSDPMILTIAIDYSDYDQHLTPYNFRSGMLKGIRDWVKHYEHYNYDGQT FT VYDLIEYGYGEGRVQNSFWKGKSAVKKVDLDEYMDLNDDERFVGSFRPPRGSLPVRDRA FT VYDRLKCTPGKEHVVISPTDGSDLARVNTHLSGENSTLVANSLHNMAIGRIMQEEIHKY FT CYGKIEFLSEQYVGDDTLFYTKPHCRSPEDFDAIFDVIFNTIKKCGHEASPSKTLIAPF FT SVEKTQTHAKAGIYVGQDRMMIVSSERKKDIEDVGGYLASQIQTLTTKVSRGFSHELAQ FT LVFMMKSTVIGFRKLKRTIKDTHGYRDRSFDHQEEDGFTLMMIKDPLVAFLPREWGGAG FT MNPLAINVVNTEEVFLDMAADPFFREIMDPLLKILQPMPPVWNETRGDKRSLSSDTAMG FT FFSKMARPMVRLAFDNPIVGDLVKNLPLGDYSPFNLSHTMMRSALLKEQRARALLAPGY FT ELEYQRELSKKWKEPSFTLGSKKDMEIDSGYAKIFDVVPFGREVVESHFFPDVNISPEF FT YIQKVKLGHRNASRQRMSYIDRIDGILRGDVVMRGFLTSGTIMSILDDIGPVHDASDLS FT MLFQMLNLSSIVADRLATYISSERVKFDSLQIAKRGIGGDEFTMSLNVLTGEFMDRYLR FT VPPQFTKTEVDACLLYVAQLCMINCFKEGSLKRLDINVSNNERRRIRQRIARYRTFVPP FT MRILRRAARSERIAARMVGNQFT" XX SQ Sequence 3963 BP; 1224 A; 716 C; 969 G; 1054 T; 0 other; gtttatttag gcatggtcat tactgtggac ggagcagaag tagttcggga agccttgaac 60 cgcattttca agtatggtgc gtttcagggc gacacacccg tctacgagta ctataggtat 120 tcatcgagaa ttaggcagct gagaagaaaa catggagcaa aatactcaat tagtgacgcg 180 gagatggaaa ggaggagaga caggggtgag ttgagccttt atggcctaca agttattacc 240 gagaacgagg ttacgcaaat ccttaaatta ccaacgcatg accagggagt agagatagtt 300 gatatattct ataactctgt tctaccatgt gatgagcttg aaccagacga agaatttcta 360 aggaattatc gagtagaaga gaaccatgga cttcagactt ttatatcgta tcgtgcttcg 420 caagaaatgc aagtttttgg tgacttacca ctaaattttt ggtgcgcttt tatcgaatca 480 gcatcatcat actttgagca tgaacctcta ggattgacgg tactgagaca aataacatgt 540 gataaaggcg tcctgttcca tcaaaacagt cgtgatctat ctcaaataga agatatctct 600 tacacatatt ctggtccatt actatttgag atgtgcataa ctgagtcaat acttgagtat 660 aatatggtat gtcgtatgag agaggagaaa atttctgatc ttcaatatgg acatgatagt 720 attgatccgt ttgaaataat acgcgagttt tttattatgt gtttaccgca tccaaagaag 780 ataaacaata tgctgaggtc accgtactca tggatggtta aaacctgggg aatctgttgc 840 gcggagcagg taattctgga ttctcgcgga ggacctgacc gtaattctaa agatgttttc 900 tacactggat ataggaaagt tgtgaaccaa tacggaccta tcttgcttaa aacacgtttt 960 ttcaaagaca gtctgaaact caaccgtgag aaggtggaag aagcgatcaa atattctcaa 1020 tgcttaggag gacaccgccg aagcttgaac atctttaggt cgatgttgaa aaaaccatat 1080 accacggagt ttgacccaag caacgtacgg cacgtaatgc tggctagttt attattgtca 1140 atacagacta ttacgggtta tggaagggcg tgggttaaga acgaatctag cgatgtggaa 1200 agccagatga agcctaatga caataatctg atatcgaggg tgagcgagta cactggacgg 1260 aacttctata acgcgtacgc tgaagcgaaa gaagcaggtg aggaaatagt gaaaccggaa 1320 gatatgcaca cgtccttact gcgacttgca aagaacacta gttcaggttt ttccactgag 1380 atagttgtaa ataagcgttt tggtcccgga atcagcgcct cgtcatttga aaaaattaag 1440 atctcttcaa ggataaaagc tttggttata ttcacgaaag ggcatgaggt ctttacacca 1500 agtaacctag tccagaagta taatacggtt gagtattacc agactaaagg aagccgggat 1560 gttccaataa aatcaactcg aaccatatac gctattaatt tatcaatact tatgcctcag 1620 ttactactga cactacctct gaacgaatat tttgccaaag ttggtgggag tacgttacct 1680 gattataaga ggttaggagg taaagttatc gtgggcgacc tggaagccac ggggagccgt 1740 acaatggacg ctgctgactg ctttcgaaat tcatctgacc caatgatttt gacaatagca 1800 atcgactact ctgattatga ccagcactta accccatata actttagatc tgggatgctt 1860 aaaggaatta gggattgggt gaaacattac gaacactaca attacgacgg gcagactgta 1920 tacgatttga ttgagtatgg atatggagag ggaagagtac aaaattcttt ttggaagggg 1980 aagtcggcag ttaagaaagt agatttagat gagtatatgg acttgaatga cgacgagaga 2040 tttgtaggta gttttaggcc acctcgaggt agcttacctg tacgagatcg cgccgtgtat 2100 gatcgtctga agtgtacgcc tggaaaagag cacgttgtaa tttcgccgac agacggcagt 2160 gatttggcga gggttaatac ccacttatct ggtgagaatt caacattggt agctaactct 2220 ctccataaca tggcgattgg aagaattatg caagaagaga ttcataaata ctgttacggg 2280 aagatcgaat tcttgtctga acagtatgtt ggagatgaca cacttttcta cactaagcct 2340 cattgtcgat ctcctgagga ctttgatgcc attttcgatg tgatcttcaa tacaataaag 2400 aaatgcggac acgaagcgtc accatcgaaa acgttgatag cccctttctc cgtagagaaa 2460 acacaaactc acgcgaaagc tggaatatat gtgggccaag ataggatgat gattgtcagt 2520 tctgaaagga agaaagacat agaggacgtt ggaggttacc tagcgtctca gattcaaact 2580 ctcacgacta aggtgagcag aggcttttca catgagctgg cgcagttggt gtttatgatg 2640 aaatccaccg tgatcggatt ccgcaaactg aagaggacca taaaagatac acatgggtat 2700 agggatagat cattcgatca ccaagaagag gacggattta cgttgatgat gataaaagat 2760 ccactagtag cttttttacc acgagagtgg ggtggagcgg gaatgaaccc gctggcgatt 2820 aatgtggtca atactgagga ggtgttttta gatatggcgg ctgacccttt cttccgggag 2880 ataatggatc cattactcaa gatactacaa cctatgccac ccgtttggaa tgaaacaagg 2940 ggggataaaa gatcactatc atctgataca gcgatgggat ttttctcaaa gatggcgaga 3000 ccgatggtta gactggcatt tgataacccc atagtaggag atttagtaaa gaacttgccg 3060 ctaggcgatt actcaccatt caacctgtca catactatga tgagaagcgc attgcttaag 3120 gaacagagag ctcgcgctct tttagcgcca gggtacgaat tagaatacca acgagaatta 3180 agtaaaaaat ggaaagaacc gtcatttacc ctaggcagta agaaagatat ggaaattgat 3240 tcggggtacg ctaaaatttt tgatgtagta cctttcggtc gtgaagtagt cgaaagccat 3300 ttctttccag atgtgaacat atctcccgag ttttacatac agaaagtgaa gttgggacat 3360 cgaaacgcca gcagacaacg aatgtcgtac attgatcgta tagatgggat tctcaggggt 3420 gacgtcgtaa tgagaggctt cttaacgagc ggaaccatta tgtcaatatt agatgatatt 3480 gggccggtac atgatgcttc agatctttca atgctattcc agatgctgaa cttgagctcc 3540 attgtggccg atagattagc aacgtatata tcgtcagagc gagtgaaatt cgattcgctg 3600 caaatagcga aaagggggat aggtggagat gaattcacaa tgtcgctaaa tgttctgact 3660 ggggagttta tggatagata tttgcgtgtt ccaccccagt ttacgaagac agaggttgat 3720 gcatgtttgt tatatgtggc tcagctatgt atgatcaatt gctttaagga gggttccttg 3780 aagaggttgg atatcaacgt tagcaacaat gagcgaagga gaattaggca gcgcatagcg 3840 cgttatagga cttttgtgcc acccatgagg atattgagac gagctgctcg ttcagaaaga 3900 atagctgcta gaatggttgg gaaccaattc acctaggtac actccgaacg cctaaagagt 3960 tac 3963 //