ID FJ177030; SV 2; circular; genomic DNA; STD; VRL; 2757 BP. XX AC FJ177030; XX DT 30-SEP-2008 (Rel. 97, Created) DT 01-MAR-2018 (Rel. 136, Last updated, Version 5) XX DE Jatropha yellow mosaic virus segment DNA-A, complete sequence. XX KW . XX OS Jatropha yellow mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2757 RX PUBMED; 21971870. RA Snehi S.K., Raj S.K., Khan M.S., Prasad V.; RT "Molecular identification of a new begomovirus associated with yellow RT mosaic disease of Jatropha gossypifolia in India"; RL Arch. Virol. 156(12):2303-2307(2011). XX RN [2] RP 1-2757 RA Raj S.K., Snehi S.K., Kumar S.; RT ; RL Submitted (02-SEP-2008) to the INSDC. RL Plant Molecular Virology, National Botanical Research Institute, Rana RL Pratap Marg, Lucknow, U. P. 226001, India XX RN [3] RC Sequence update by submitter RP 1-2757 RA Raj S.K., Snehi S.K., Kumar S.; RT ; RL Submitted (12-AUG-2011) to the INSDC. RL Plant Molecular Virology, National Botanical Research Institute, Rana RL Pratap Marg, Lucknow, U. P. 226001, India XX DR MD5; 593bc91655315f8a78bb21c89d0d004d. XX CC On Aug 12, 2011 this sequence version replaced FJ177030.1. XX FH Key Location/Qualifiers FH FT source 1..2757 FT /organism="Jatropha yellow mosaic virus" FT /segment="DNA-A" FT /host="Jatropha gossypiifolia" FT /lab_host="Nicotiana tabacum cv. White Burley" FT /mol_type="genomic DNA" FT /country="India:Kathaupahadi, Tikamgarh, Madhya Pradesh" FT /collected_by="S. K. Snehi" FT /collection_date="25-Jun-2008" FT /db_xref="taxon:1485012" FT CDS 143..499 FT /codon_start=1 FT /product="AV2" FT /note="pre-coat protein" FT /db_xref="GOA:B6DXE4" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:B6DXE4" FT /protein_id="ACI15828.2" FT /translation="MWDPLLNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL FT ISVIRARNYVEATSRYNHFHARLEGTPPSQLRQLICEPCCCPHCPRQQSKSMGEQADEQ FT KAQDVQAVQKSGCS" FT CDS 303..1073 FT /codon_start=1 FT /product="AV1" FT /note="coat protein; involved in encapsidation of virion" FT /db_xref="GOA:B6DXE5" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:B6DXE5" FT /protein_id="ACI15829.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSSYASRVAAPIVRVNKAKAWV FT NRPMNRKPRMYRLFRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTRNHTNSVLFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT TENALMLYMACTHASNPVYATMKIRIYFYDSVSN" FT CDS complement(1070..1474) FT /codon_start=1 FT /product="AC3" FT /note="REn protein; increases viral replication" FT /db_xref="GOA:B6DXE6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:B6DXE6" FT /protein_id="ACI15830.2" FT /translation="MDSRTGEPITAARFNNGVFIWTVPNPLYFRVPVHMSRPFHLEQDI FT IHIQIQFNHNLRQALQIHKCFLSFKVWTRSRIPTGSFLRVFKTQVIRYLDRLGVISINL FT VIRAVDHVLYNVLHHDANVEQSNEIIFRLY" FT CDS complement(1215..1619) FT /codon_start=1 FT /product="AC2" FT /note="TrAP protein; transcriptional activator for virus FT sense genes" FT /db_xref="GOA:B6DXE7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:B6DXE7" FT /protein_id="ACI15831.2" FT /translation="MSCSSSSQNLYTQVPIKVQHRIAKKRSIRRGVDLKCGCSYFLSLT FT CANHGFTHRGTHHCSSFQQWRLYLDGPKSPILPRPSAHEQALPPGTGHHTHPNTIQSQS FT QASTTDTQVLPELQSLDSFTDSDWEFLTSL" FT CDS complement(1522..2607) FT /codon_start=1 FT /product="AC1" FT /note="replication-associated protein" FT /db_xref="GOA:B6DXE8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B6DXE8" FT /protein_id="ACI15832.2" FT /translation="MAAPNRFKLNAKNYFLTYPKCSLTKEEALSQFLNLQTPTSKKFIR FT ICRELHENGEPHLHVLIQFEGKYKCQHQRFFDLVSPTRSAQFHPNIQGAKSSSDVKSYM FT EKDGDTIDWGEFQIDGRSARGGQQSANDAYATAINAGSKIEALNILKNKSPKDYIFQFH FT NLKSNLDRFLQEPPVEYVSPFSSSSFDQVPAELEEWAAENVVDAAARPLRPMSIVIEGN FT SRTGKTMWARSLGSHNYLCGHLDLSPRVYSNDVWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPTSSYKEYLDEDRNAALKNWAVKNVLFVFLSEPL FT YSGTYQGPTQDSEEEVHPARS" FT CDS complement(2157..2450) FT /codon_start=1 FT /product="AC4" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:B6DXE9" FT /protein_id="ACI15833.2" FT /translation="MGNPTYMFLSSSKENTSANISDSLIWSPQPGQHNSIQTSRELKAP FT ATSSPIWRRTETPSTGESFRSMEDLHEEDNNQPMTLTPQRLTQGQKLRPSIY" XX SQ Sequence 2757 BP; 750 A; 554 C; 635 G; 818 T; 0 other; accggatggc cgcgattttt tttttgggcc ccttaacgca ttaactgaca aggatagggg 60 accccatccc aaggcgcggt taaaggttaa atgttttgtg gtccccccta taaacttagt 120 caccaagtat ttattctcca atatgtggga tccattgttg aatgagtttc ctgaaaccgt 180 tcacggtttt aggtgtatgc tagcagttaa atatttgcaa ttagtagaaa agacctattc 240 cccagatact ctggggtacg atttaattag ggatttgatt tcagtaataa gggctaggaa 300 ttatgtcgaa gcgaccagca gatataatca tttccacgcc cgcctcgaag gtacgccgcc 360 gtctcaactt cgacagctca tatgcgagcc gtgttgctgc ccccattgtc cgcgtcaaca 420 aagcaaaagc atgggtgaac aggccgatga acagaaagcc caggatgtac aggctgttca 480 gaagtccgga tgttcctaaa ggatgtgaag gcccatgtaa ggtccagtcg tttgaatcta 540 gacacgatgt agtccatata gggaaggtca tgtgtattag tgatgtcact cgcggtactg 600 ggctgaccca tagagttggt aagcgttttt gtgttaagtc tgtttacgtt ttgggtaaaa 660 tatggatgga tgagaatatc aagaccagga atcacacgaa cagtgtcctg ttctttcttg 720 ttcgtgaccg tcgccctgtt gataagccac aggactttgg agaggtgttc aatatgttcg 780 acaacgagcc tagcactgct actgttaaga atatgcacag agatcgttat caggtgttga 840 ggaagtggca cgcaactgtc accggtggac aatacgcttc aaaagaacag gcattagtga 900 agaagtttat tagggttaat aattatgttg tgtacaacca gcaagaggct gggaagtatg 960 agaatcatac ggagaatgcg ttgatgttgt atatggcgtg tacgcacgcc tctaaccctg 1020 tgtatgctac gatgaagata cggatctatt tctatgattc agtatcgaat taataaagac 1080 gaaatattat ttcattgctt tgttcaacat ttgcatcgtg atgcagtaca ttatacaata 1140 catgatctac agctctaatt acaagattaa tagaaattac acctaatcta tctaaatatc 1200 taataacttg agtcttaaag actcgtaaga aactcccagt cggaatccgt gaacgagtcc 1260 agactttgaa gctcaggaag cacttgtgta tctgtagtgc ttgcctgaga ttgtgattga 1320 attgtatttg gatgtgtatg atgtcctgtt ccaggtggaa gggcctgctc atgtgcactg 1380 ggacgcggaa gtatagggga tttgggaccg tccagataaa gacgccattg ttgaaacgag 1440 ctgcagtgat gggttcccct gtgcgtgaat ccatgattcg cgcaggttaa tgacagaaaa 1500 tatgaacatc cgcacttcag atcaactcct cgccggatgg acctcttctt cgctatcctg 1560 tgttggacct tgataggtac ctgagtatag aggttctgag aggaagacga acaagacatt 1620 cttaaccgcc cagttcttta atgctgcgtt cctatcttcg tctaaatact ctttatagct 1680 ggaagttggc ccaggattgc agaggaagat tgtcggaatg ccccctttaa tttgaacggg 1740 ctttccatac ttggtgttac tttgccagtc tctctgggcc cccataaatt ccttgaagtg 1800 ctttagataa tgcggatcaa catcatcaat gacgttatac catacgtcat tactatagac 1860 tcttggactg agatccaagt gaccgcataa atagttgtgt gaacccaatg acctggccca 1920 cattgttttc cccgtcctac tattaccctc tatgactata ctcatgggtc tcaaaggccg 1980 cgcagcggca tccaccacat tctcggcagc ccattcctca agttctgccg gaacttgatc 2040 gaaagaagaa gaagaaaaag gagaaacata ctccacagga ggctcctgta aaaatctatc 2100 taaattagat tttaaattgt gaaattgaaa aatataatct ttaggagact tattctttaa 2160 tatattgagg gcctcaattt ttgaccctgc gttaatcgct gtggcgtaag cgtcattggc 2220 tgattgttgt cctcctcgtg cagatcttcc atcgatctga aactctcccc agtcgatggt 2280 gtctccgtcc ttctccatat aggacttgac gtcgctggag cttttagctc cctggatgtt 2340 tggatggaat tgtgctgacc tggttgggga gaccagatca aagaatcgct gatgttggca 2400 cttgtatttt ccttcgaact ggataagaac atgtaagtgg ggttccccat tttcgtgaag 2460 ctctctgcag attctaatga attttttaga agttggtgtt tggagattta agaattggga 2520 aagtgcttct tctttagtga gggagcactt gggataagtg agaaaataat tttttgcatt 2580 taatttaaac cgatttgggg ctgccatgtt gacttagtca atcggtgtct ctcaatttgt 2640 tctatgtatc ggtgtactgg agtcctatat atatggagac tctaatggca taattgtaat 2700 aatagaactt taatttgaaa tcctcaaaat aaaataaacg gccatccgta taatatt 2757 //