ID FJ170278; SV 1; linear; genomic DNA; STD; VRL; 5196 BP. XX AC FJ170278; XX DT 05-FEB-2009 (Rel. 99, Created) DT 11-MAR-2021 (Rel. 144, Last updated, Version 4) XX DE Human bocavirus 2c isolate PK-5510, complete genome. XX KW . XX OS human bocavirus 2c OC Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Quintoviricetes; OC Piccovirales; Parvoviridae; Parvovirinae; Bocaparvovirus; OC Primate bocaparvovirus 2. XX RN [1] RP 1-5196 RX DOI; 10.1086/595831. RX PUBMED; 19072716. RA Kapoor A., Slikas E., Simmonds P., Chieochansin T., Naeem A., Shaukat S., RA Alam M.M., Sharif S., Angez M., Zaidi S., Delwart E.; RT "A newly identified bocavirus species in human stool"; RL J. Infect. Dis. 199(2):196-200(2009). XX RN [2] RP 1-5196 RA Kapoor A., Slikas E., Simmonds P., Chieochansin T., Naeem A., Shaukat S., RA Alam M.M., Sharif S., Angez M., Zaidi S., Delwart E.; RT ; RL Submitted (28-AUG-2008) to the INSDC. RL Molecular Virology, Blood Systems Research Institute, 270, Masonic Avenue, RL San Francisco, CA 94118, USA XX DR MD5; a27bce009d51416f3f9c2fd5687e76b2. DR EuropePMC; PMC2902747; 20415538. DR EuropePMC; PMC2957997; 20113572. DR EuropePMC; PMC3078135; 21525999. DR EuropePMC; PMC3122821; 21325551. DR EuropePMC; PMC3125170; 21738642. DR EuropePMC; PMC3487788; 23133667. DR EuropePMC; PMC3837656; 24209884. DR EuropePMC; PMC3838256; 24109231. DR EuropePMC; PMC5861819; 29352084. DR EuropePMC; PMC6360332; 30766894. XX FH Key Location/Qualifiers FH FT source 1..5196 FT /organism="human bocavirus 2c" FT /host="Homo sapiens" FT /isolate="PK-5510" FT /mol_type="genomic DNA" FT /country="Pakistan" FT /isolation_source="stool" FT /note="genotype: 1" FT /db_xref="taxon:2773471" FT CDS 179..2101 FT /codon_start=1 FT /product="NS1" FT /db_xref="GOA:B9UYK5" FT /db_xref="InterPro:IPR001257" FT /db_xref="InterPro:IPR014015" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/Swiss-Prot:B9UYK5" FT /protein_id="ACJ38931.1" FT /translation="MAFSAPVIRAFSQPAFTYVVKFPYENWKEEEHLLWSLLAPGTERL FT MIQLRNCAPHPEDDPVREDILCSLADQHYGAIFAKACYIATTTLMGQKQRTPFPRCDII FT CQSEIGSEHLHCHILVGGAGLSKRNAKISRATLLGLVMAELTQRCKQLLALRPFEPAEA FT NIFHLLKRIEREAWSGHTGNWVQILQYKDKRGDLHAQPIDPLRFLKHYILPKNRLISPS FT SKPDVCTTPDNWFILADKTYAHTIINGLPLLEHNRKAYLQELESEVIPGPSTMAFGGRG FT AWEQLPEVGEQRLITSNASTAYKANKKEKLMLNLLDKCDELNLLVYEDLVSACPDLLLM FT LEGQPGGARLIEQVLGMHHIKVCAKYTALTFLFHLHPDQLLTSNNKALKLLLIQGYNPL FT QVGHAICCVLNKQMGKQNTICFYGPASTGKTNFAKAIVQGVRLYGCVNHLNKGFVFNDC FT RQRLIIWWEECLMHQDWVEPAKCILGGTECRIDVKHKDSVLLQQTPVIISTNHDIYSVV FT GGNTVSHVHAAPLKERVLQLNFMKQLPQTFGEISPVEIAELLQWCFNEYECTLTGFKQK FT WNLDKVPNSFPLGDLCPTHSQDYTLHENGFCTDCGGYLPHSADDFVYTDVASETTSGDC FT DPGRL" FT CDS 2330..2974 FT /codon_start=1 FT /product="NP1" FT /db_xref="GOA:B9UYK6" FT /db_xref="InterPro:IPR021075" FT /db_xref="UniProtKB/Swiss-Prot:B9UYK6" FT /protein_id="ACJ38932.1" FT /translation="MSSESMKNKHRNSKRTPSPLQKERRRNWESHKSRSRSPIRRHGEK FT NLEYAHHSNQENRQSSYTALKTSDQATKTKEKTSGGNRTNPYTVFSQHRANHSDAPGWC FT GFYWHSTRLARDGTNCIFNEMKQEFQELQINGKITWDNARELLFSQKKKLDQKYRNMLY FT HFRHSPDCPRCDYWDNVYRRHLAHVSSQESEEVTDEEMLSAVESMDTNASN" FT CDS 2961..4964 FT /codon_start=1 FT /product="VP1" FT /db_xref="GOA:B9UYK7" FT /db_xref="InterPro:IPR001403" FT /db_xref="InterPro:IPR013607" FT /db_xref="InterPro:IPR016184" FT /db_xref="InterPro:IPR036952" FT /db_xref="UniProtKB/Swiss-Prot:B9UYK7" FT /protein_id="ACJ38933.1" FT /translation="MPPIKRQPGGWVLPGYKYLGPFNPLENGEPVNKADRAAQAHDKSY FT SEIIKSGKNPYLYFNKADEKFIDDLKNDWSLGGIIGSSFFKLKRAVAPALGNKERAQKR FT HFYFANSNKGAKKPKNNEPKPGTSKMSENEIQDQQPSGSMEERGGGGGAVGSVGGGKGS FT SVGISTGGWVGGSYFTDSYVITKNTRQFLVKIQNDHKYRTENIIPSNAGGKSQRCVSTP FT WSYFNFNQYSSHFSPQDWQHLTNEYKRFKPRKMHVKIYNLQIKQILSNGADTTYNNDLT FT AGVHIFCDGEHAYPNATHPWDEDVMPELPYETWYLFQYGYIPVIHELAEMEDANAVEKA FT IALQIPFFMLENSDHEVLRTGESTEFTFDFDCEWINNERAYIPPGLMFNPKVPTRRAQY FT IRQHGNTASSNTRIQPYAKPTSWMTGPGLLSAQRVGPAGSDTASWMVVVNPDGAAVNSG FT MAGVGSGFDPPSGSLRPTDLEYKIQWYQTPAGTNSDGNIISNPPLSMLRDQALYRGNQT FT TYNLCSDVWMFPNQIWDRYPITRENPIWCKKPRSDKNTIIDPFDGTLAMDHPPGTIFIK FT MAKIPVPSNNNADSYLNIYCTGQVSCEIVWEVERYATKNWRPERRHTALGLGIGGEENV FT NPTYHVDKNGKYIQPTTWDMCYPIKTNINKVL" FT CDS 3348..4964 FT /codon_start=1 FT /product="VP2" FT /db_xref="GOA:B9UYK7" FT /db_xref="InterPro:IPR001403" FT /db_xref="InterPro:IPR013607" FT /db_xref="InterPro:IPR016184" FT /db_xref="InterPro:IPR036952" FT /db_xref="UniProtKB/Swiss-Prot:B9UYK7" FT /protein_id="ACJ38934.1" FT /translation="MSENEIQDQQPSGSMEERGGGGGAVGSVGGGKGSSVGISTGGWVG FT GSYFTDSYVITKNTRQFLVKIQNDHKYRTENIIPSNAGGKSQRCVSTPWSYFNFNQYSS FT HFSPQDWQHLTNEYKRFKPRKMHVKIYNLQIKQILSNGADTTYNNDLTAGVHIFCDGEH FT AYPNATHPWDEDVMPELPYETWYLFQYGYIPVIHELAEMEDANAVEKAIALQIPFFMLE FT NSDHEVLRTGESTEFTFDFDCEWINNERAYIPPGLMFNPKVPTRRAQYIRQHGNTASSN FT TRIQPYAKPTSWMTGPGLLSAQRVGPAGSDTASWMVVVNPDGAAVNSGMAGVGSGFDPP FT SGSLRPTDLEYKIQWYQTPAGTNSDGNIISNPPLSMLRDQALYRGNQTTYNLCSDVWMF FT PNQIWDRYPITRENPIWCKKPRSDKNTIIDPFDGTLAMDHPPGTIFIKMAKIPVPSNNN FT ADSYLNIYCTGQVSCEIVWEVERYATKNWRPERRHTALGLGIGGEENVNPTYHVDKNGK FT YIQPTTWDMCYPIKTNINKVL" XX SQ Sequence 5196 BP; 1698 A; 1100 C; 1060 G; 1337 T; 1 other; ggagtggcta cgtatggggt gatcataaac acgcccagga agtgacgtat gtcaaccaat 60 cagcatcgag catatatcct atataagccg atgcactycc gcatctcgtc agactgcatc 120 cggtctccgg cgagtgaaca tctctgggaa gagctccacg cacgtggtga gtgacactat 180 ggccttttct gctcctgtaa ttagagcttt ttctcaacct gcttttactt atgttgttaa 240 atttccatat gaaaactgga aagaggaaga gcacttacta tggagcttac ttgctcctgg 300 gactgaacgt ctcatgattc aactaagaaa ctgcgcacca catcctgaag atgatcctgt 360 cagggaagat attttatgct cactagcaga tcaacactat ggtgctattt ttgctaaagc 420 ttgctacata gctacaacta cactaatggg gcagaaacag agaacacctt ttccacgctg 480 cgacattata tgccaatctg aaattggttc agaacatcta cattgtcaca tacttgttgg 540 aggagccggt ctcagcaaaa gaaatgctaa aatttcacgt gctacacttc tgggtcttgt 600 gatggctgaa ctaacacaac gctgcaaaca gcttcttgcg cttcgtccat ttgaaccagc 660 tgaggctaat atttttcatc tcctcaagcg cattgaacgc gaagcatggt cagggcatac 720 tggtaactgg gttcaaattc ttcaatacaa agataagcga ggtgatcttc acgctcaacc 780 aattgatcct ttacgctttt taaagcatta catactacca aaaaatcgat tgatttctcc 840 ttccagcaaa cctgacgtct gcactactcc agataactgg ttcattctag ctgacaaaac 900 atacgctcac actattatta atgggcttcc gctgctagaa cataacagaa aagcctatct 960 acaagagtta gaaagtgaag tcatcccggg gccttctacc atggcctttg ggggacgtgg 1020 tgcgtgggaa caacttcctg aggtaggaga acaacgctta attacttcta atgcttctac 1080 tgcttataaa gctaacaaaa aagaaaaatt aatgctaaat ttacttgata aatgtgatga 1140 acttaattta cttgtttatg aagacttagt tagtgcttgt cctgaccttt tacttatgct 1200 tgaaggtcag ccaggtggtg cacgcctaat tgaacaggtg cttggcatgc atcatattaa 1260 ggtgtgtgct aaatacactg cattaacatt tttatttcat ttacatccgg atcaattatt 1320 aacttctaac aataaagctt taaaactact gttgattcaa gggtacaacc cacttcaagt 1380 agggcatgcc atctgttgtg tacttaacaa acagatgggc aagcagaaca ctatctgctt 1440 ttatggtcct gcttcaacag gcaaaacaaa ctttgcaaaa gcaatagttc aaggtgttcg 1500 cctttatggc tgtgttaatc atttaaacaa agggtttgtc tttaacgatt gcagacaacg 1560 ccttataatt tggtgggaag agtgtttaat gcaccaagat tgggtggaac ctgctaaatg 1620 cattttaggc ggaactgaat gtagaattga tgttaaacat aaagacagtg ttcttcttca 1680 acaaacacca gtaattattt ccactaacca tgacatctac tctgtagttg gtggcaatac 1740 tgtttctcat gttcatgcag caccattaaa agagcgagtc cttcagctaa atttcatgaa 1800 acaactgcca caaacatttg gagaaatttc tccagttgaa attgcagaac tattgcaatg 1860 gtgctttaat gagtacgaat gtactcttac tggctttaaa caaaaatgga acttagataa 1920 agttccaaac tcatttcctc ttggagacct ttgtcctaca cattcacagg actacacgct 1980 tcacgaaaac ggattctgca ctgactgtgg cggctatctt cctcatagtg ctgacgattt 2040 tgtctacact gacgtggcta gcgaaacaac aagcggagac tgcgacccag gtaggcttta 2100 atacatttgc ttaattaaat tatatatttg cactttgctt atgtattaac tcctacaggt 2160 aacctggggg atacggacgg agaggactcc aagtcagagg catcggaagt ggactttcgt 2220 ccatccaaga agaggcgtgt gatttcagca actccaccaa gcagtccagt aagtggtcca 2280 agcctttcta cctttttaga tacttggcag tcacaaccta gggacgaaga tgagctccga 2340 atctatgaag aacaagcatc gcaactccaa aagaacacca agtccactcc agaaagagag 2400 gaggcgcaac tgggagagcc acaagagccg cagccggagc ccgatccgac ggcatgggga 2460 gaaaaacttg gagtatgctc atcacagcaa ccaggagaac cgccagtcgt cttatactgc 2520 tttgaagacc tcagaccaag cgacgaagac gaaggagaaa acatcggggg ggaatagaac 2580 caatccttat actgtattca gtcaacacag ggctaatcat tcagatgctc ctggatggtg 2640 tgggttttac tggcattcta ctagacttgc tagagatggg actaattgta tctttaatga 2700 aatgaaacaa gaatttcaag aattacaaat aaatggaaaa attacttggg acaatgctag 2760 agaactattg tttagtcaga aaaaaaagct agatcaaaaa tacagaaaca tgctgtatca 2820 tttcagacac agtcctgatt gtcctagatg tgattattgg gataatgtat accgtagaca 2880 cttagctcat gtctcttcac aggaatcaga ggaggttaca gacgaagaaa tgctttctgc 2940 tgttgaaagc atggatacaa atgcctccaa ttaaacgcca gcctggaggg tgggtgcttc 3000 ctggttataa ataccttggt ccattcaatc ctcttgaaaa cggtgaacca gttaataaag 3060 ctgatcgtgc tgctcaagct catgataaat catattctga aataataaaa agtggaaaaa 3120 atccttactt gtatttcaat aaagctgatg aaaaattcat tgacgatttg aaaaacgact 3180 ggtctcttgg tggcattatt ggctcaagtt tctttaaact taagcgcgcc gtggctcctg 3240 ctctaggaaa taaagagcga gctcaaaaaa gacattttta ctttgcaaac tcaaataaag 3300 gtgctaaaaa accaaaaaat aacgagccta aaccaggcac atcaaaaatg tctgaaaatg 3360 aaatccaaga ccaacaacca tctggctcca tggaggagcg aggaggcgga ggaggtgcgg 3420 tcggtagtgt gggagggggg aaaggttcta gtgtgggtat atccacaggc ggctgggttg 3480 gaggcagcta ctttactgac tcatatgtca taacaaagaa cactagacag ttcttagtta 3540 aaatacaaaa tgaccacaaa tacagaacag agaatataat tccaagcaac gcaggaggaa 3600 aatcccagcg atgcgtaagc acaccttggt catactttaa cttcaatcaa tacagcagtc 3660 acttctcacc acaagactgg cagcatttaa caaatgaata taaacgcttt aagcctagaa 3720 aaatgcatgt aaaaatttac aacttacaaa taaaacaaat actctcaaat ggtgctgaca 3780 ctacatacaa caacgaccta acagctggtg ttcacatctt ttgtgatggt gaacacgcat 3840 atccaaatgc aacacatcca tgggatgaag atgtcatgcc agaacttcca tatgaaacat 3900 ggtatttgtt tcaatatgga tacattccag ttattcatga actggctgaa atggaagacg 3960 caaatgctgt agaaaaagct atagcactac aaataccctt tttcatgctt gaaaacagcg 4020 accatgaagt gttaagaaca ggagaaagca cagaattcac ttttgacttt gactgtgaat 4080 ggataaacaa cgaaagagca tacattcctc ctggattaat gtttaatcca aaagttccta 4140 caagaagagc tcaatacatc agacagcacg gaaacacagc atccagcaac accagaattc 4200 aaccatatgc aaaacctaca agctggatga caggaccagg tctactcagc gcacaaagag 4260 taggaccagc tggctcagac actgcatcat ggatggttgt tgtcaatcca gacggagctg 4320 cagttaactc aggaatggca ggagttggtt caggatttga tcctccttca ggatctctaa 4380 gaccaactga cttagaatac aaaatacaat ggtaccaaac tcctgcaggt accaacagtg 4440 atggaaacat catttcaaat ccaccactat ccatgctcag agatcaagct ctctacagag 4500 gaaatcaaac aacctacaac ctatgctcag atgtgtggat gttcccaaat caaatttggg 4560 acagatatcc aataaccaga gaaaatccaa tctggtgtaa aaaaccaaga tcagacaaaa 4620 acacaataat tgatcctttc gatggaacac ttgcaatgga tcatccgcca ggaacaatct 4680 tcataaaaat ggcaaaaatt ccagttcctt caaacaacaa cgcagactca tacctaaaca 4740 tctactgcac tggacaagtc agctgcgaaa ttgtctggga agttgaaaga tacgcaacaa 4800 agaactggag accagaaaga agacacaccg cacttggtct tggaattgga ggagaagaaa 4860 acgtaaatcc aacttatcat gtagacaaaa atggaaaata cattcaacca acaacttggg 4920 acatgtgcta tcctatcaaa acaaacatca ataaagtgtt gtaatctctt aagcctgttc 4980 attgcttatg cttataagtt cctctccaat ggacaagagg aaagaaaagg gtgactgtaa 5040 tcccgagctc atgagttcga ggctacagtc cgatggcagt ggtgttgccg tctcgaacct 5100 agccggtaca cccttgtgca ttgtgggagg agctgttttg cttacgcaat cgcgaaattt 5160 tatatattta atgtagtgtt gtactgcgtc aggcat 5196 //