Dbfetch
ID FJ159271; SV 1; circular; genomic DNA; STD; VRL; 2752 BP. XX AC FJ159271; XX DT 28-SEP-2008 (Rel. 97, Created) DT 11-APR-2009 (Rel. 100, Last updated, Version 3) XX DE Mesta yellow vein mosaic virus [India:Srikakulam:2008] segment DNA A, DE complete sequence. XX KW . XX OS Mesta yellow vein mosaic virus [India:Srikakulam:2008] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2752 RX DOI; 10.1016/j.virusres.2008.11.022. RX PUBMED; 19428737. RA Roy A., Acharyya S., Das S., Ghosh R., Paul S., Srivastavab R.M., RA Ghosh S.K.; RT "Distribution, epidemiology and molecular variability of the begomovirus RT complexes associated with yellow vein mosaic disease of mesta in India"; RL Virus Res. 141(2):237-246(2009). XX RN [2] RP 1-2752 RA Das S., Ghosh R., Acharyya S., Paul S., Palit P., Das A., Roy A., RA Ghosh S.K.; RT ; RL Submitted (25-AUG-2008) to the INSDC. RL Crop Protection, Central Research Institute for Jute and Allied Fibres, RL Barrackpore, Kolkata, West Bengal 700120, India XX DR MD5; 1710a8ebc8963a95648c1a7fb55e63f3. XX FH Key Location/Qualifiers FH FT source 1..2752 FT /organism="Mesta yellow vein mosaic virus FT [India:Srikakulam:2008]" FT /segment="DNA A" FT /host="Hibiscus sabdariffa" FT /isolate="Srikakulam:South India" FT /mol_type="genomic DNA" FT /country="India:South India, Srikakulam" FT /clone="SI-FL-29" FT /db_xref="taxon:562947" FT gene 132..488 FT /gene="AV2" FT CDS 132..488 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:B6DRW3" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:B6DRW3" FT /protein_id="ACI06075.1" FT /translation="MWDPLLNEFPETVHGFRCMLAIKYLQQLSEEYSPDTVGYDLIRDL FT ISILRCRNYVEASCRYRHFYPRVEGASSTELRQPLCNPCSCPHCPRHKVSYVGEQAHVS FT EAQNVQDVQKPRCS" FT gene complement(271..600) FT /gene="AC5" FT CDS complement(271..600) FT /codon_start=1 FT /gene="AC5" FT /product="AC5 protein" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:B6DRW4" FT /protein_id="ACI06081.1" FT /translation="MGQPSTPSNITKTNNLTYMDYIVSRIKRLDLTWALTSLRNIWASV FT HPVHSGLPIHGPVRPHTRLCDADSGGNCTGCIGAVEVQSTTHLRRGGRNDDIGRTLRHN FT SYNVR" FT gene 292..1062 FT /gene="AV1" FT CDS 292..1062 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:B6DRW5" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:B6DRW5" FT /protein_id="ACI06076.1" FT /translation="MSKRPADIVISTPASKVRRRLNFDSPYATRAVAPTVRVTKSRMWA FT NRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFDSRHDIVHIGKVICLSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKSKNHTNNVMFFLVRDRRPVDKPQDFGEVFNMFDNEP FT STATVKNVQRDRYQVLRKWYATVTGGQYGAKEQALVKKFIRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRSYFYDSVTN" FT gene complement(1028..1468) FT /gene="AC3" FT /gene_synonym="ren" FT CDS complement(1028..1468) FT /codon_start=1 FT /gene="AC3" FT /gene_synonym="ren" FT /product="replication enhancer protein" FT /db_xref="GOA:B6DRW6" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:B6DRW6" FT /protein_id="ACI06079.1" FT /translation="MDLRTGEPITAAQAWSGAYIWEVPNPLYFKILSHEDRPYSSNMDI FT ITVRIQFNYNLRRALGVHKCFLTFRVWTTLHPPTGLFLRVFKTQVLKYLKNLGVISINA FT IIRAVDHVLYNKLEQTMYVDQYSEIKFDLYNINLLQNRRSNS" FT gene complement(1161..1613) FT /gene="AC2" FT /gene_synonym="trap" FT CDS complement(1161..1613) FT /codon_start=1 FT /gene="AC2" FT /gene_synonym="trap" FT /product="transcription activator protein" FT /db_xref="GOA:B6DRW7" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:B6DRW7" FT /protein_id="ACI06078.1" FT /translation="MRSSSPLKDHCTQVPIKVQHREAKRRNRRKRVDLECGCSYYLSIN FT CFNHGFTHRGTHHCSSSMEWRLYLGSSKSPLFQNPQPRGPSLFEQHGHNNSQDPIQLQP FT SESSGSAQVFSDLPGLDDLTPSDWSFLKGIQNPSAQVSQKSGCNLN" FT gene complement(1510..2598) FT /gene="AC1" FT /gene_synonym="rep" FT CDS complement(1510..2598) FT /codon_start=1 FT /gene="AC1" FT /gene_synonym="rep" FT /product="replication initiator protein" FT /db_xref="GOA:B6DRW8" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B6DRW8" FT /protein_id="ACI06077.1" FT /translation="MPPRRNGIYSKNYFVTYPKCSLTKEEALSQLLNLQTPTSKKYIKI FT CRELHEDGTPHLHVLIQFEGKFKCQNMRFFDLVSPNRSAHFHPNIQGAKSSSDVKSYID FT KDGDILEWGKFQIDGRSARGGQQTANDAYAAALGKGVRSEASQFGNELDRKDFVLQFHN FT ANANQDRIGQDTPAPYPFPFSSSQSNQGTEEREESAKENVVDAAARPLGPQSISTEGDS FT RTGKTMWCMSLGPHNYLCGHLDLSPKVYSNDAWYNVIDGVDPHFLKHFKEFMGAQRDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPISSYKEFLEEEKNTALKNWAVKNAIFVTLEGPLY FT SGTNQSTAQGSEETQQEEESRS" FT gene complement(2142..2450) FT /gene="AC4" FT CDS complement(2142..2450) FT /codon_start=1 FT /gene="AC4" FT /product="regulatory protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:B6DRW9" FT /protein_id="ACI06080.1" FT /translation="MKMGLLTCMFSSSSRGNSSARICDSSTWSPQTDQHISIRTYRELN FT PAPTSSPTSTRTGTFSNGANFRSTEGQQEEGSRQPTTLTPQHLARELDQRLVNSEMN" XX SQ Sequence 2752 BP; 697 A; 573 C; 629 G; 853 T; 0 other; accggatggc cgcgcgattt ttttgtggtc ccctccacta actcttgtcg gccaatcata 60 tgacgcgctc aaagcttaaa taaatttcct gcctattata agtacttcgt cgctaagttc 120 ttgtttgaaa aatgtgggat ccacttttaa acgagttccc cgagacggtt cacgggtttc 180 gttgcatgct tgctatcaaa tatcttcaac aattgtctga ggaatactcc cctgatacgg 240 ttgggtacga tctaattcgc gatttaattt ctatcttacg ttgtaggaat tatgtcgaag 300 cgtcctgccg atatcgtcat ttctaccccc gcgtcgaagg tgcgtcgtcg actgaacttc 360 gacagcccct atgcaacccg tgcagttgcc cccactgtcc gcgtcacaaa gtctcgtatg 420 tgggcgaaca ggcccatgta tcggaagccc agaatgtaca ggatgtacag aagcccagat 480 gttcctaagg gatgtgaggg cccatgtaag gtccagtctt ttgattctag acacgatata 540 gtccatatag gtaaggttat ttgtcttagt gatgttacta ggggtactgg gctgacccat 600 agagtaggga aacgtttctg tgttaagtct gtttatgtgt tgggtaagat atggatggat 660 gaaaatataa agtccaagaa tcacacgaac aatgtgatgt tctttctcgt tcgtgatcga 720 cgtcctgttg acaagcctca agattttgga gaggttttca atatgtttga caacgagcct 780 agcactgcta ctgtgaagaa tgttcagcgg gatcgttacc aggtcttgag gaaatggtat 840 gcaactgtca ctggtggaca gtatggtgca aaggaacagg ctttagttaa gaagtttatt 900 agggttaata attatgttgt ttacaatcag caagaggcag ggaaatacga gaatcattct 960 gagaatgcgt tgatgttgta tatggcatgt acccatgcct ctaatcctgt ttacgctact 1020 cttaagatta ggagttactt ctacgattct gtaacaaatt aatattataa agatcgaatt 1080 ttatttctga atattgatct acatacatag tttgttccaa tttattatac aatacatgat 1140 ctactgctct aataattgcg ttaattgaga ttacacccag atttttgaga tacttgagca 1200 cttgggtttt gaataccctt aagaaaagac cagtcggagg gtgtaaggtc gtccagaccc 1260 ggaaggtcag aaaacacttg tgcactccca gagctctccg aaggttgtag ttgaattgga 1320 tcctgactgt tattatgtcc atgttgctcg aataaggacg gtcctcgtgg ctgaggattt 1380 tgaaatagag gggatttgga acttcccaga tataggcgcc actccatgct tgagctgcag 1440 tgatgggttc ccctgtgcgt aaatccatgg ttgaagcagt taatggatag ataataagaa 1500 cacccgcatt caagatctac tctcttcctc ctgttgcgtc tcttcgcttc cctgtgctgt 1560 actttgattg gtacctgagt acagtggtcc ttcaagggtg acgaagatcg cattcttcac 1620 tgcccagttt ttgagtgcgg tgttcttttc ctcctccaga aattctttat aactgctgat 1680 gggaccagga ttgcagagga agattgttgg tattccgcct ttaatttgaa ctggcttccc 1740 gtactttgta ttggattgcc agtccctttg ggcccccatg aactccttaa agtgcttgag 1800 gaagtgcgga tctacgccat caatgacgtt ataccatgcg tcgttactgt acacctttgg 1860 actaagatct aagtgcccac acagatagtt atgtgggcct aaagacatac accacattgt 1920 cttcccagta cgactatctc cctcagtact aatactttga ggtcccaggg gccgcgcagc 1980 ggcgtcgact acattttctt ttgccgactc ttcacgttct tctgttcctt gattggattg 2040 agaagatgaa aaagggaaag gataaggagc tggtgtgtcc tgacctatcc tgtcctgatt 2100 tgcatttgca ttatgaaatt gaagtacaaa atctttacga tctagttcat ttccgaattg 2160 actagcctct gatctaactc ccttgccaag tgctgcggcg taagcgtcgt tggctgtctg 2220 ctgccctcct cttgctgacc ttccgtcgat ctgaaatttg ccccattcga gaatgtcccc 2280 gtccttgtcg atgtaggact tgacgtcgga gctggattta gctccctgta tgttcggatg 2340 gaaatgtgct gatctgtttg gggagaccaa gtcgaagaat cgcatattct ggcacttgaa 2400 tttcccctcg aactggatga gaacatgcaa gtgaggagtc ccatcttcat gaagctctct 2460 gcagatttta atatattttt ttgaagttgg ggtttggaga tttaataatt gggaaagtgc 2520 ttcctctttg gtgagagaac atttgggata agtgacgaaa tagtttttgg aataaatacc 2580 gttacgcctt ggaggcatgt tgactaaaat tgatcaccga ttgaccgctc ttgcaactct 2640 ctcctgtata tcggtgatca atatatagtg atcaccaaat ggcataatgg taataaaaca 2700 acttttattt gaaattagaa aaaaaaattt ttgcggccat ccgcttaata tt 2752 //