ID FJ159264; SV 1; circular; genomic DNA; STD; VRL; 2752 BP. XX AC FJ159264; XX DT 28-SEP-2008 (Rel. 97, Created) DT 11-APR-2009 (Rel. 100, Last updated, Version 3) XX DE Mesta yellow vein mosaic virus-[India:Raigunj:2008] segment DNA A, complete DE sequence. XX KW . XX OS Mesta yellow vein mosaic virus-[India:Raigunj:2008] OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2752 RX DOI; 10.1016/j.virusres.2008.11.022. RX PUBMED; 19428737. RA Roy A., Acharyya S., Das S., Ghosh R., Paul S., Srivastavab R.M., RA Ghosh S.K.; RT "Distribution, epidemiology and molecular variability of the begomovirus RT complexes associated with yellow vein mosaic disease of mesta in India"; RL Virus Res. 141(2):237-246(2009). XX RN [2] RP 1-2752 RA Acharyya S., Das S., Ghosh R., Paul S., Palit P., Das A., Roy A., RA Ghosh S.K.; RT ; RL Submitted (25-AUG-2008) to the INSDC. RL Crop Protection, Central Research Institute for Jute and Allied Fibres, RL Barrackpore, Kolkata, West Bengal 700120, India XX DR MD5; 7c27f622c95b0aec631597b2b29b89ba. XX FH Key Location/Qualifiers FH FT source 1..2752 FT /organism="Mesta yellow vein mosaic FT virus-[India:Raigunj:2008]" FT /segment="DNA A" FT /host="Hibiscus cannabinus" FT /isolate="Raigunj:East India" FT /mol_type="genomic DNA" FT /country="India:East India, Raigunj" FT /clone="EI-FL-22" FT /db_xref="taxon:562949" FT gene 132..488 FT /gene="AV2" FT CDS 132..488 FT /codon_start=1 FT /gene="AV2" FT /product="pre-coat protein" FT /db_xref="GOA:B6DRR4" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:B6DRR4" FT /protein_id="ACI06026.1" FT /translation="MWDPLLNEFPETVHGFRCMLAIKYLQQLSEEYSPDTVGYDLIRDL FT ISILRCRNYVEASCRYRHFYPRVEGASSTELRQPLCNPCSCPHCPRHKVSYVGEQAHVS FT EAQNVQDVQKPRCS" FT gene complement(271..600) FT /gene="AC5" FT CDS complement(271..600) FT /codon_start=1 FT /gene="AC5" FT /product="AC5 protein" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:B6DRR5" FT /protein_id="ACI06032.1" FT /translation="MGQPNTPSNIRKTNNPTHVTNIILRIKRLHLTWAFTSLRNIWASV FT HPVHSGLPIHGPVRPHTRLCDADSGGNCTGCIGAVEVQSTTHLRRGGRNDDIGRTLRHN FT SYNVR" FT gene 292..1062 FT /gene="AV1" FT CDS 292..1062 FT /codon_start=1 FT /gene="AV1" FT /product="coat protein" FT /db_xref="GOA:B6DRR6" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:B6DRR6" FT /protein_id="ACI06027.1" FT /translation="MSKRPADIVISTPASKVRRRLNFDSPYATRAVAPTVRVTKSRMWA FT NRPMYRKPRMYRMYRSPDVPKGCEGPCKVQSFDAKNDIGHMGRVICLSDVTRGIGLTHR FT VGKRFCVKSLYFVGKIWMDENIKTKNHTNTVMFWIVRDRRPSGTPNDFQQVFNVYDNEP FT STATVKNDQRDRFQVLRRFQATVTGGQYAAKEQAIIRKFYRVNNYVVYNHQEAGKYENH FT TENALLLYMACTHASNPVYATLKVRSYFYDSVTN" FT gene complement(1028..1468) FT /gene="AC3" FT /gene_synonym="ren" FT CDS complement(1028..1468) FT /codon_start=1 FT /gene="AC3" FT /gene_synonym="ren" FT /product="replication enhancer protein" FT /db_xref="GOA:B6DRR7" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:B6DRR7" FT /protein_id="ACI06030.1" FT /translation="MDLRTGEPITAAQAWSGAYIWEVPIPLYFKILSHEDRPYSSNMDI FT ITVRIQFNYNIRRALGVHKCFLTFRVWTTLHPPTGLFLRVFKTQVLKYLKNLGVISINA FT IIRAVDHVLYNKLEQTMYVDQYSEIKFDLYNINLLQNRRSNS" FT gene complement(1161..1613) FT /gene="AC2" FT /gene_synonym="trap" FT CDS complement(1161..1613) FT /codon_start=1 FT /gene="AC2" FT /gene_synonym="trap" FT /product="transcription activator protein" FT /db_xref="GOA:B6DRR8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:B6DRR8" FT /protein_id="ACI06029.1" FT /translation="MRSSSPLKDHCTQVPIKVQHREAKRRNRRKRVDLECGCSYYLSIN FT CFNHGFTHRGTHHCSSSMEWRLYLGSSNPPLFQNPQPRGPSLFEQHGHNNSQDPIQLQH FT SESSGSAQVFSDLPGLDDLTPSDWSFLKGIQNPSAQVSQKSGCNLN" FT gene complement(1510..2598) FT /gene="AC1" FT /gene_synonym="rep" FT CDS complement(1510..2598) FT /codon_start=1 FT /gene="AC1" FT /gene_synonym="rep" FT /product="replication initiator protein" FT /db_xref="GOA:B6DRR9" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:B6DRR9" FT /protein_id="ACI06028.1" FT /translation="MPPRRNGIYSKNYFVTYPKCSLTKEEALSQLLNLQTPTSKKYIKI FT CRELHEDGTPHLHVLIQFEGKFKCQNMRFFDLVSPNRSAHFHPNIQGAKSSSDVKSYID FT KDGDILEWGKFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHN FT LNANLDRIFQEPPAPYVSPFSSSSFNQVPEELEEWASENVVDAAARPLRPQSIVIEGDS FT RTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDWQ FT SNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLEEEKNTALKNWAVKNAIFVTLEGPLY FT SGTNQSTAQGSEETQQEEESRS" FT gene complement(2142..2450) FT /gene="AC4" FT CDS complement(2142..2450) FT /codon_start=1 FT /gene="AC4" FT /product="regulatory protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:B6DRS0" FT /protein_id="ACI06031.1" FT /translation="MKMGLLTCMFSSSSRGNSSARICDSSTWSPQTDQHISIRTYRELN FT PAPTSSPTSTRTGTFSNGANFRSTEGQQEEGSRQPTTLTPQHLTREVSQRLLESLRN" XX SQ Sequence 2752 BP; 710 A; 576 C; 627 G; 839 T; 0 other; accggatggc cgcgcgattt ttttgtggac ccctccacta actcttgtcg gccaatcata 60 tgacgcgctc aaagcttaaa taaatttcct gcctattata agtacttcgt cgctaagttc 120 ttgtttgaaa aatgtgggat ccacttttaa acgagttccc cgagacggtt cacgggtttc 180 gttgcatgct tgctatcaaa tatcttcaac aattgtctga ggaatactcc cctgatacgg 240 ttgggtacga tctaattcgc gatttaattt ctatcttacg ttgtaggaat tatgtcgaag 300 cgtcctgccg atatcgtcat ttctaccccc gcgtcgaagg tgcgtcgtcg actgaacttc 360 gacagcccct atgcaacccg tgcagttgcc cccactgtcc gcgtcacaaa gtctcgtatg 420 tgggcgaaca ggcccatgta tcggaagccc agaatgtaca ggatgtacag aagcccagat 480 gttcctaagg gatgtgaagg cccatgtaag gtgcagtctt ttgatgcgaa gaatgatatt 540 ggtcacatgg gtagggttat ttgtctttct gatgttacta ggggtattgg gctgacccat 600 cgagtaggga aacgtttctg cgtgaagtca ttgtattttg ttggcaaaat ttggatggac 660 gagaacatca agaccaagaa ccatacgaat actgttatgt tttggattgt tagagatagg 720 cgtccttcag gaaccccaaa cgatttccag caagtgttca atgtttatga taacgagccc 780 tctacggcta ctgtgaagaa cgaccagcgt gatcgttttc aggtgttgag gaggtttcaa 840 gcaacagtca caggtggtca atatgctgct aaggaacaag ctataattag gaaattctat 900 cgtgttaaca attatgtggt gtataatcac caggaagctg ggaagtacga aaatcacact 960 gaaaatgcgt tgttgttata tatggcatgt actcatgcct ctaaccctgt gtatgctact 1020 ttgaaagtta ggagttactt ctacgattct gtaacaaatt aatattataa agatcgaatt 1080 ttatttctga atattgatct acatacatag tttgttccaa tttattatac aatacatgat 1140 ctactgctct aataattgcg ttaattgaga ttacacccag atttttgaga tacttgagca 1200 cttgggtttt gaataccctt aagaaaagac cagtcggagg gtgtaaggtc gtccagaccc 1260 ggaaggtcag aaaacacttg tgcactccca gagctctccg aatgttgtag ttgaattgga 1320 tcctgactgt tattatgtcc atgttgctcg aataaggacg gtcctcgtgg ctgaggattt 1380 tgaaatagag ggggattgga acttcccaga tataggcgcc actccatgct tgagctgcag 1440 tgatgggttc ccctgtgcgt aaatccatgg ttgaagcagt taatggatag ataataagaa 1500 cacccgcatt caagatctac tctcttcctc ctgttgcgtc tcttcgcttc cctgtgctgt 1560 actttgattg gtacctgagt acagtggtcc ttcaagggtg acgaagatcg cattcttcac 1620 tgcccagttt ttgagtgcgg tgttcttttc ctcctccaga aattctttat aactgctgtt 1680 gggaccagga ttgcagagga agattgttgg tattccgcct ttaatttgaa ctggcttccc 1740 gtactttgta ttggattgcc agtccctttg ggcccccatg aactctttaa agtgcttgag 1800 gaagtgcgga tctacgtcat caatgacgtt ataccatgcg tcgttactgt acacctttgg 1860 actaagatct aagtgcccac acagatagtt atgtgggcct aaagacctag cccacattgt 1920 cttcccagta cgactatctc cctcaattac tatactttga ggtctcaggg gccgcgcagc 1980 ggcgtcgaca acattttccg acgcccactc ttcaagttct tctggaactt gattgaaaga 2040 agaagatgaa aaaggagaaa cataaggagc tggtggctcc tgaaatatcc tgtctagatt 2100 tgcatttaaa ttatgaaatt gtagtacaaa atctttagga gctagttcct taatgactct 2160 aagagcctct gacttacttc ccgcgttaag tgctgcggcg taagcgtcgt tggctgtctg 2220 ctgccctcct cttgctgacc ttccgtcgat ctgaaatttg ccccattcga gaatgtcccc 2280 gtccttgtcg atgtaggact tgacgtcgga gctggattta gctccctgta tgttcggatg 2340 gaaatgtgct gatctgtttg gggagaccaa gtcgaagaat cgcatattct ggcacttgaa 2400 tttcccctcg aactggatga gaacatgcaa gtgaggagtc ccatcttcat gaagctctct 2460 gcagatttta atatattttt ttgaagttgg ggtttggaga tttaataatt gggaaagtgc 2520 ttcctctttg gtgagagaac atttgggata agtgacgaaa tagtttttgg aataaatacc 2580 gttacgcctt ggaggcatgt tgactaaaat tgatcaccga ttgaccgctc ttgcaactct 2640 ctcctgtata tcggtgatca atatatagtg atcaccaaat ggcataatgg taataaaaca 2700 acttttattt gaaattcgaa aaaaaaattt ttgcggccat ccgcttaata tt 2752 //