ID FJ157981; SV 1; linear; mRNA; STD; VRL; 2740 BP. XX AC FJ157981; XX DT 24-SEP-2008 (Rel. 97, Created) DT 18-SEP-2009 (Rel. 102, Last updated, Version 2) XX DE Cassava virus C isolate IC putative RNA dependent RNA polymerase mRNA, DE complete cds. XX KW . XX OS Cassava virus C OC Viruses; Riboviria; Botourmiaviridae; Ourmiavirus. XX RN [1] RP 1-2740 RX DOI; 10.1099/vir.0.013086-0. RX PUBMED; 19535502. RA Rastgou M., Habibi M.K., Izadpanah K., Masenga V., Milne R.G., Wolf Y.I., RA Koonin E.V., Turina M.; RT "Molecular characterization of the plant virus genus Ourmiavirus and RT evidence of inter-kingdom reassortment of viral genome segments as its RT possible route of origin"; RL J. Gen. Virol. 90(Pt 10):2525-2535(2009). XX RN [2] RP 1-2740 RA Rastgou M., Turina M.; RT "New data on three species of the plant virus genus Ourmiavirus with unique RT structural and molecular features"; RL Unpublished. XX RN [3] RP 1-2740 RA Turina M.; RT ; RL Submitted (25-AUG-2008) to the INSDC. RL IVV, CNR, Strada delle Cacce 73, Torino, TO 10135, Italy XX DR MD5; 6ea2063c488083ab1665ccdb1b6af0ad. DR EuropePMC; PMC4091139; 19535502. XX FH Key Location/Qualifiers FH FT source 1..2740 FT /organism="Cassava virus C" FT /segment="RNA1" FT /host="Manihot esculenta" FT /lab_host="Nicotiana benthamiana" FT /isolate="IC" FT /mol_type="mRNA" FT /country="Cote d'Ivoire" FT /db_xref="taxon:561576" FT CDS 21..2633 FT /codon_start=1 FT /product="putative RNA dependent RNA polymerase" FT /note="p98" FT /db_xref="UniProtKB/TrEMBL:B5U1W6" FT /protein_id="ACI03053.1" FT /translation="MSKRPLAACLSVEETSFYAKTEVSKLCGLVDRMGKLPRTYAGDDL FT PIDDNLKPVARSVLAPILGTRLTRERTEYICSLSSQLVVGISDVTYILLGSALSVKEIR FT WQSQLFAILAIAGKLEAAFKSHTGFLLATCLGDRYDSPDPSSSNYGGIAPGRIFPPRFQ FT RKIWMRCVLRRRPQDVTLASSLVNIKRVAPPVPDSFVQESLNKNRERLSKPQSDCPDPI FT LDMLERQVVRTVDEIVYNAKKEGWNRKIARSAFPSQSASFARSIASGGQLGEIVPENWS FT LRFPTLLAMVERCQEVVPIYGWHESPETVLTENLRGHIDACLEVRRSPVLEPFKVRTIT FT MGPAEPYFKARRIQGVLWDLLKHTRCTHLPNRPIHESDISFFCSRRGDAVFPDEETFFV FT SGDYSAATDCLSPVLSTVAVDRLCDHLLSPENQVLDPVHPWRALFHRVLVGHKIMEGKR FT GEEVEIAAQTWGQLMGSPLSFPILCIVNLAITRASIEHTAKRQLYLEECGILVNGDDIL FT FKLPLRGLARWDFLVTRGGLHPSPGKNFVSKDYAVLNSTIYRVGRTAELIPTIKGNLIN FT GTACRGIERPRDGSLYFSDASKYSWGTIGDRARELIKGFPNHIADQLLSRFLISMKPHL FT DLFPRISWWAHPQYGGLGLPVTRPGDFLPVHRRVGAFLACGGRRSQEFRMNMQWLSNPV FT KQFNAFTSQYLMDIARSLSVPVKQIYNDETEPEFFLEREIMYSALRFGVEFPTNARGNR FT ELLAAWRHFYRQLERRALRTRITDGDLPERKADRKGLFLLSPEKLIAGPRFKYVYDWAC FT KNQGGNIWSSSSRGYVLFDKHRVLESSALPFGKDEVKSSVSTHFTPVNEYRQRIFFWT" XX SQ Sequence 2740 BP; 660 A; 678 C; 690 G; 712 T; 0 other; cccaattttg acaaacaaag atgtcaaaac gcccacttgc cgcctgtctt agtgtagagg 60 aaacctcctt ttatgcgaag acggaagtga gtaagctctg cggattggta gaccgcatgg 120 gaaaactccc aaggacctac gctggcgacg atctcccgat cgacgacaac ttaaaacccg 180 ttgcccgtag tgttcttgcc cctattttgg ggactcgatt gacgcgggag cgaacagaat 240 acatatgctc cctgagctct caactggtgg tcgggatatc cgacgttaca tacatcctcc 300 ttggcagtgc attatcagtc aaagagataa gatggcagtc ccaattattt gctatactgg 360 ctattgccgg taagcttgag gccgccttca aatcccacac tggctttctt ttagccacct 420 gccttggaga ccgctacgat tcacctgatc cttcatcgtc aaattatgga ggcatagccc 480 ccggaaggat ctttccgccg cgttttcaac gtaagatctg gatgagatgt gtacttagga 540 gacgccctca agacgtgact ttagcgtcaa gtcttgtaaa tataaagagg gtcgctcccc 600 cggttcctga ctcctttgtt caggaaagcc taaataaaaa ccgggaaagg ctttcgaagc 660 ctcagtctga ttgtccagat cctattctcg acatgctcga gcggcaggtt gtccgtactg 720 tggacgagat tgtgtataat gccaagaaag agggttggaa tcgcaagatc gcgagatctg 780 cttttccttc tcaatcggca tcctttgctc gttccatcgc ctcgggcgga cagctaggtg 840 aaatagtccc agagaattgg tctctccgtt ttccaacgtt gttagccatg gtagaacgct 900 gccaagaggt agtgcccata tatggctggc atgaatcgcc ggagaccgtt cttaccgaga 960 atctgcgggg acatatagac gcctgtctag aggttagacg ctctccggtg ctggagccct 1020 ttaaagttag aacaattaca atgggtccgg ctgaaccgta ctttaaggct cgaaggatac 1080 aaggggtact ctgggatttg cttaagcata ccagatgcac tcacctgccc aatcggccta 1140 ttcatgagag cgacatttcc tttttctgct caaggcgtgg ggatgctgtt ttccccgacg 1200 aggagacttt ctttgtgagc ggagactact ccgcagcgac tgattgcctg tctcccgtcc 1260 tatcaactgt agcggttgac cggttatgcg accaccttct cagccctgaa aaccaagtcc 1320 tggatcctgt gcatccatgg cgtgcccttt tccatagagt ccttgtcggc cataagataa 1380 tggaaggaaa acgaggagaa gaggtagaga tcgctgccca aacttggggt cagcttatgg 1440 gatctcccct ctccttccct atcctatgca tagtaaatct ggccatcacc cgcgcgtcga 1500 ttgaacatac tgccaaaagg cagttgtatc ttgaagaatg cgggatactt gttaatgggg 1560 atgatattct gtttaaactt ccccttagag gactcgcccg ctgggacttc cttgtcaccc 1620 gcgggggact acatccatct cccggaaaga atttcgtgag taaggactat gccgtcctta 1680 actcaactat ttaccgtgtt gggagaactg ccgagctgat ccctactata aaagggaatc 1740 taatcaacgg tacagcttgt cgtggtattg aaaggccacg ggatggtagt ctatacttct 1800 cagatgcgag caaatattca tggggaacaa ttggggatcg agcccgggaa cttataaaag 1860 gattcccaaa ccatatcgcc gatcaattgc tctcccgctt cctcatttcg atgaagccgc 1920 atctggatct ttttccacga atatcgtggt gggcacatcc tcaatacgga ggacttggtc 1980 tgcctgtgac tcggcctgga gactttcttc cggtgcaccg tagggtaggt gcgtttctag 2040 cttgtggtgg aagacgttct caggagtttc ggatgaacat gcaatggttg tccaaccctg 2100 tgaagcagtt taacgccttt acctctcaat atctcatgga tattgcgaga agcttaagcg 2160 tacccgtgaa gcagatctat aacgatgaaa ctgaaccaga gttctttctg gaacgggaaa 2220 tcatgtacag cgcgcttcgc ttcggggtcg aattccccac caatgcccgc ggaaaccgtg 2280 aacttttggc ggcctggcgt cacttttatc ggcagttaga acgtagggcg ttaaggactc 2340 gaatcactga tggtgacctt ccggaaagga aggcggacag aaaggggctt ttcctccttt 2400 ccccggagaa actgattgct ggaccccgat tcaaatatgt ctatgattgg gcatgtaaga 2460 atcaaggtgg aaacatctgg tctagtagtt ctcgggggta tgtcctattc gataagcaca 2520 gagtccttga gtcgagcgct ctcccttttg ggaaggatga ggtcaagtcg agtgtgagca 2580 ctcacttcac tccagtaaat gagtatcgtc agaggatctt cttttggaca tagtcactgc 2640 ggtcatattt ccgcaaactg atctacaaga agacatgatc ttggcatgaa atcccgtctg 2700 gagttagtgt cttcccctgg ctttcgccag gagaatcggg 2740 //