ID   FJ039522; SV 1; linear; genomic RNA; STD; VRL; 1113 BP.
XX
AC   FJ039522;
XX
DT   15-MAY-2009 (Rel. 100, Created)
DT   18-JUN-2009 (Rel. 101, Last updated, Version 2)
XX
DE   Cassava brown streak virus isolate BSA2 polyprotein (pol) gene, partial
DE   cds.
XX
KW   .
XX
OS   Cassava brown streak virus
OC   Viruses; Riboviria; Potyviridae; Ipomovirus.
XX
RN   [1]
RP   1-1113
RX   DOI; 10.1128/JVI.00537-09.
RX   PUBMED; 19386713.
RA   Mbanzibwa D.R., Tian Y., Mukasa S.B., Valkonen J.P.;
RT   "Cassava brown streak virus (Potyviridae) encodes a putative Maf/HAM1
RT   pyrophosphatase implicated in reduction of mutations and a P1 proteinase
RT   that suppresses RNA silencing but contains no HC-Pro";
RL   J. Virol. 83(13):6934-6940(2009).
XX
RN   [2]
RP   1-1113
RA   Mbanzibwa D.R., Tian Y., Tugume A.K., Valkonen J.P.T.;
RT   ;
RL   Submitted (18-AUG-2008) to the INSDC.
RL   Applied Biology, University of Helsinki, Latokartnonkaari 7, Helsinki
RL   00790, Finland
XX
DR   MD5; 59f1113c3c6468800baae96ae215ced6.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1113
FT                   /organism="Cassava brown streak virus"
FT                   /host="cassava"
FT                   /isolate="BSA2"
FT                   /mol_type="genomic RNA"
FT                   /country="Uganda"
FT                   /collection_date="2007"
FT                   /db_xref="taxon:137758"
FT   gene            <1..>1113
FT                   /gene="pol"
FT   CDS             <1..>1113
FT                   /codon_start=1
FT                   /gene="pol"
FT                   /product="polyprotein"
FT                   /db_xref="GOA:C4N229"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR002637"
FT                   /db_xref="InterPro:IPR027502"
FT                   /db_xref="InterPro:IPR029001"
FT                   /db_xref="UniProtKB/TrEMBL:C4N229"
FT                   /protein_id="ACM48178.1"
FT                   /translation="VSIIQSRFRELFSECGLDYNFDDVHKSIETIEYMSHSFMLKDDVY
FT                   IPKLKKERIVAILEWERGDEIMRTRSALNAAYIESYGYDDLMVEIERYAVFWATEKGCE
FT                   YPLLDRKRVEGLYKDDYTDINEEWLVGILPPSFEHCYVDTQTEDLRGREKLELRTESHD
FT                   GISQMQMKFPITFVTGNLGKLAEVKSILGISSDVMAKNIDLPEVQGTPDEIVIKKAQLA
FT                   VKMTNSPVLVEDTCLCFNAFNGLPGPYIKWFLKELGLEGVVKMLSAFGDKSAYALCTFA
FT                   YVHNELSDPVVFKGVVNGEIVPPRGNNGFGWDPIFKPDECSCTFAEMSSSIKNDFSHRR
FT                   RALEKVKLFLDNLVVKQEKKKARVALTIDVQ"
FT   mat_peptide     <1..435
FT                   /gene="pol"
FT                   /product="NIb protein"
FT   mat_peptide     436..1113
FT                   /gene="pol"
FT                   /product="HAM1-like protein"
XX
SQ   Sequence 1113 BP; 357 A; 145 C; 279 G; 332 T; 0 other;
     gtgagcataa ttcagagtag gttcagggag ttgttttcag aatgtggttt agattataat        60
     tttgatgatg ttcacaagtc aatagaaaca attgagtata tgagccattc attcatgctg       120
     aaagatgatg tgtatattcc aaagttgaag aaagaaagaa ttgttgcaat tcttgaatgg       180
     gagagaggtg atgagattat gcgaacgcgg agtgctctta atgctgctta tattgaaagt       240
     tatggatatg atgaccttat ggttgaaatt gagcggtatg cggttttctg ggctaccgag       300
     aaaggttgtg agtatccatt actggataga aagcgtgtag aaggacttta caaagatgat       360
     tacacagata tcaatgaaga atggctggta ggtattttac caccatcatt cgaacattgt       420
     tatgttgaca cgcagactga ggatttgaga ggaagagaga agcttgagtt gagaactgag       480
     agccatgatg gaatatccca aatgcaaatg aagtttccaa ttacatttgt gacaggaaac       540
     ttgggaaaat tagcagaagt gaagtctatt cttggcattt caagtgatgt tatggctaag       600
     aacattgatt taccagaagt gcaaggaact ccggatgaaa ttgtgataaa gaaagcgcaa       660
     ttagcagtga agatgactaa tagtcctgtt ttagtcgaag atacatgtct ttgctttaat       720
     gctttcaatg gacttcctgg gccatacata aaatggtttt taaaagaatt gggtcttgaa       780
     ggtgttgtta aaatgttgtc agcatttgga gataaatcag cgtacgcact atgcacattc       840
     gcatatgtgc acaatgaatt gtctgatcca gttgtgttta aaggagttgt aaatggtgaa       900
     attgtgccgc cacgaggtaa caatggtttt ggttgggatc ctatatttaa gcctgacgaa       960
     tgtagttgta cgttcgcaga aatgtcaagc agcattaaga atgatttttc ccacagaaga      1020
     agagctttag agaaagtcaa gttgtttctt gataacttag tggtgaagca agagaagaag      1080
     aaagcaagag tggctctaac gattgatgtt cag                                   1113
//