ID   FJ039521; SV 1; linear; genomic RNA; STD; VRL; 1275 BP.
XX
AC   FJ039521;
XX
DT   15-MAY-2009 (Rel. 100, Created)
DT   18-JUN-2009 (Rel. 101, Last updated, Version 2)
XX
DE   Cassava brown streak virus isolate HMA9 polyprotein (pol) gene, partial
DE   cds.
XX
KW   .
XX
OS   Cassava brown streak virus
OC   Viruses; Riboviria; Potyviridae; Ipomovirus.
XX
RN   [1]
RP   1-1275
RX   DOI; 10.1128/JVI.00537-09.
RX   PUBMED; 19386713.
RA   Mbanzibwa D.R., Tian Y., Mukasa S.B., Valkonen J.P.;
RT   "Cassava brown streak virus (Potyviridae) encodes a putative Maf/HAM1
RT   pyrophosphatase implicated in reduction of mutations and a P1 proteinase
RT   that suppresses RNA silencing but contains no HC-Pro";
RL   J. Virol. 83(13):6934-6940(2009).
XX
RN   [2]
RP   1-1275
RA   Mbanzibwa D.R., Tian Y., Tugume A.K., Valkonen J.P.T.;
RT   ;
RL   Submitted (18-AUG-2008) to the INSDC.
RL   Applied Biology, University of Helsinki, Latokartnonkaari 7, Helsinki
RL   00790, Finland
XX
DR   MD5; a001ed674eeee3073735516e0635dafe.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1275
FT                   /organism="Cassava brown streak virus"
FT                   /host="cassava"
FT                   /isolate="HMA9"
FT                   /mol_type="genomic RNA"
FT                   /country="Uganda"
FT                   /collection_date="2007"
FT                   /db_xref="taxon:137758"
FT   gene            <1..>1275
FT                   /gene="pol"
FT   CDS             <1..>1275
FT                   /codon_start=1
FT                   /gene="pol"
FT                   /product="polyprotein"
FT                   /db_xref="GOA:C4N228"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR002637"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="InterPro:IPR027502"
FT                   /db_xref="InterPro:IPR029001"
FT                   /db_xref="UniProtKB/TrEMBL:C4N228"
FT                   /protein_id="ACM48177.1"
FT                   /translation="GNNSGQPSTVVDNTIILMIVVEYCKAVMESEGREMQFKYMCNGDD
FT                   LILNCFDDEVSIIQSRFRELFSECGLDYNFDDVHKSIETIEYMSHSFMLKDDVYIPKLK
FT                   KERIVAILEWERGDEIMRTRSALNAAYIESYGYDDLMVEIERYAVFWATEKGCEYPLLD
FT                   RKRVEGLYKDDHTDINEEWLRGILPPSFEHCYVDTQTKDLRREEQPELRTESYDRTTQM
FT                   QMKFPVTFVTGNFGKLAEVKSILGIANDVIARNIDLPEVQGTPDEIVRKKAQLAVKMTN
FT                   SPVLVEDTCLCFNAFNGLPGPYIKWFLKELGLEGVVKMLSAFGDKSAYALCTFAYVHNE
FT                   SSDPIVFKGVVNGEIVPPRGNNGFGWDPIFKPDECSCTFAEMSSSMKNDFSHRRRALEK
FT                   VKSFLDNLVVKQEEKKARVALTIDVQ"
FT   mat_peptide     <1..597
FT                   /gene="pol"
FT                   /product="NIb protein"
FT   mat_peptide     598..1275
FT                   /gene="pol"
FT                   /product="HAM1-like protein"
XX
SQ   Sequence 1275 BP; 402 A; 172 C; 326 G; 375 T; 0 other;
     ggtaataaca gtggtcagcc ttctacagtt gtcgacaaca ctattatact aatgattgtt        60
     gtggaatatt gcaaggctgt catggagagt gagggaagag aaatgcaatt caagtacatg       120
     tgtaatggag atgacttgat tctcaattgt tttgatgatg aagtgagtat aatccagagt       180
     aggttcagag agttgttttc agaatgtggt ttggattata attttgatga tgttcataag       240
     tcaatagaga ctattgagta tatgagccat tcattcatgc tgaaagatga tgtgtacatt       300
     ccaaagttga agaaagaaag aattgttgca attcttgaat gggagagagg tgatgagatt       360
     atgcgaacac ggagtgctct taatgctgct tatatcgaaa gttatggata tgatgatctt       420
     atggttgaaa ttgagcggta cgcggttttc tgggctaccg aaaaaggttg tgagtatcca       480
     ttactagata ggaagcgtgt ggaaggactt tacaaagatg atcacacaga tattaatgaa       540
     gaatggctga gaggtatttt accaccatca ttcgagcatt gttatgttga cacgcaaact       600
     aaggatttga gaagggaaga gcagcctgag ttgagaactg aaagttatga cagaacaacc       660
     caaatgcaga tgaagttccc agttacattt gtgacaggaa attttggaaa gttagctgaa       720
     gtgaagtcta ttcttggcat tgcaaatgat gttatagcta ggaacattga tttaccagaa       780
     gtgcaaggaa ccccagatga gattgtgaga aagaaggctc aattagcagt gaagatgact       840
     aatagtcctg ttttagtcga agacacgtgt ctttgtttca atgcttttaa tggactgcct       900
     gggccataca tcaaatggtt tctaaaagaa ttgggtcttg aaggtgttgt caaaatgctg       960
     tcagcatttg gagataagtc agcatacgca ctatgtacat ttgcatatgt gcacaatgag      1020
     tcgtctgatc caattgtgtt taaaggagtt gtgaatggtg aaattgtgcc accgcgaggt      1080
     aacaatggtt ttggttggga tcctatattc aaacctgatg aatgtagttg cacgtttgca      1140
     gaaatgtcaa gcagcatgaa gaatgatttt tcccatagaa gaagagcttt agagaaagtc      1200
     aaatcgtttc ttgataactt ggtggtgaag caagaggaga agaaggcaag ggtggctcta      1260
     acgattgatg ttcag                                                       1275
//