ID FJ011450; SV 1; linear; genomic RNA; STD; VRL; 4821 BP. XX AC FJ011450; XX DT 03-MAR-2009 (Rel. 100, Created) DT 08-JUL-2010 (Rel. 105, Last updated, Version 2) XX DE Capsicum chlorosis virus isolate CaCV-Ch-Pan segment M, complete sequence. XX KW . XX OS Capsicum chlorosis virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Tospoviridae; Orthotospovirus; OC Capsicum chlorosis orthotospovirus. XX RN [1] RP 1-4821 RX DOI; 10.1007/s00705-010-0681-5. RX PUBMED; 20443030. RA Kunkalikar S.R., Sudarsana P., Rajagopalan P., Zehr U.B., Ravi K.S.; RT "Biological and molecular characterization of Capsicum chlorosis virus RT infecting chilli and tomato in India"; RL Arch. Virol. 155(7):1047-1057(2010). XX RN [2] RP 1-4821 RA Ravi K.S., Suresh K.R., Sudarsana P., Prem R., Usha Z.B.; RT "Characterization of Capsicum chlorosis virus from India"; RL Unpublished. XX RN [3] RP 1-4821 RA Ravi K.S., Suresh K.R., Sudarsana P., Prem R., Usha Z.B.; RT ; RL Submitted (12-AUG-2008) to the INSDC. RL Molecular Virology, Mahyco Life Sciences Research Center, Dawalwadi, Jalna, RL Maharashtra 431203, India XX DR MD5; 67f7b60d89fd19bf965af4af2f3d9792. XX FH Key Location/Qualifiers FH FT source 1..4821 FT /organism="Capsicum chlorosis virus" FT /segment="M" FT /host="Capsicum annuum" FT /isolate="CaCV-Ch-Pan" FT /mol_type="genomic RNA" FT /country="India" FT /collection_date="Jan-2008" FT /note="serogroup: WSMoV" FT /db_xref="taxon:163325" FT 5'UTR 1..56 FT repeat_region 1..9 FT /rpt_type=INVERTED FT CDS 57..983 FT /codon_start=1 FT /product="nonstructural protein NSm" FT /db_xref="InterPro:IPR000603" FT /db_xref="InterPro:IPR006889" FT /db_xref="UniProtKB/TrEMBL:C0J8Z2" FT /protein_id="ACN38330.1" FT /translation="MSRFSNVLDSFRLQNNSSKELVPAVKTENSRSLLARNVSQKDVDS FT ALLNKAKTINGKQYVSGGDSSVLGTYSNELAVEATSDDILSRLVVEQSTHLSNWKNDSL FT VGNGNDKVSFTINIMPTWNSGRRFMHISRLIVWVVPTIPNSKNNVKATLVDQNKMTKSE FT KIVISKQASLKDPMCFIFHLNWSFPKERNTPKQCMQLNLTSDEKYAKGVSFASVMYSWV FT KNFCDTPIASESNTCDVVPINRAKVIQSAALIEACKLMIPKGTGGKQISNQFRSLQKVA FT EKLAMEAENEEENTDVDIEMDNLLGNS" FT misc_feature 102..116 FT /note="putative N glycosylation site" FT misc_feature 165..179 FT /note="putative N glycosylation site" FT misc_feature 657..671 FT /note="putative N glycosylation site" FT misc_feature 984..1408 FT /note="intergenic spacer" FT CDS complement(1409..4774) FT /codon_start=1 FT /product="glycoprotein precursor" FT /note="G1/G2" FT /db_xref="GOA:C0J8Z3" FT /db_xref="InterPro:IPR005167" FT /db_xref="InterPro:IPR014414" FT /db_xref="UniProtKB/TrEMBL:C0J8Z3" FT /protein_id="ACN38331.1" FT /translation="MRKYYLLVYCLGLHSLFFVSEVYLWNQSDNNVQLRRIQDRYKVDD FT PEDLIDVEEPVIVKTEKPKGKKLSRILRNDEATTNLPSSELSCDSFEKKYCVIKGVSDF FT NAHNQIDNGKEIISCISSSSNIFEICQYDKEFKKIKFKNFPVVPVLKLENKKILEIGTK FT FFFVDKSNNPINIDPKVDLKSPTVARLSVRLSGDCKINQVSMSSPYQIKIRSEENIGLL FT IKNIKSSKLESVKSIIGDSTINFKPEELDGNHFLLCGDKSSLIAKVDIPVRNCVSKYSD FT EPKKILFCTNSSYFRWVFVFLMIAFPISWLIWKTKDALSLWYDILGILTYPILWTINWL FT WPYFPLKCRICGCFSFLTHSCTEKCVCNQSKASKDHTEECYLSIKDKVEWHKLTLIQQF FT QFIINTKLSTNFLVFITKMILASILISYIPTSIAMKQQNLCVEKCYYNLNLDNLTTDKF FT GMPSNGYESCDCSIGNVITETVYRSGVPMSRATSLNDCVLGSDLCMVRNNQAQNLFACR FT NGCNSLESIKSIPNVKFNKLYRGQSFKGNLTSLKIANRLRDGYMDSTTESIILEEESAK FT EYKFYKRLKVDDVPPENLMPRQSLVFSTEVDGKYRYLIEMDIKSNTGSIYFLNDDATHS FT PMEFMVYVKSVGVEYDIRYKYSTAKIDTTVAENLVTCTGTCNDCIKQKPKVGVLDFCVT FT PTSWWGCEELGCLAINEGGICGHCTNIYDLSSLVNVYQVVESHVSAEICVKSLDGYSCK FT KHSDRSPIQTDYYQLDMSVDLHNDYLSTDKLFAVDKQQRILTGDKADLRDFAGSSFGQP FT QITADGILLSVPATLSPNDFTWSCSTVGERKVNIRQCGLYTYSNIYVLPTSKDVSHIDE FT YNNKLYMVKDFLVGKLKMVIDMPKEMFKKIPTKPIISEAKMICSGCSQCAAGIDCNITY FT TSDTTFSSRLMMDTCSFKSDQLGTFLGPNKKSIKAYCSDEIADKSLRLIPEDQDELTVD FT IPVDEFIHIDQDTIIHFDDKSAHDEKIHHSDTSISNLWDWIKAPFNWVASFFGNFFDLV FT RVILVIAAACIGIYILSSIFRLSKTYYVDKRRQKLEDAIESMESNVLLTNYTGIDQARK FT RRSPPKGYDFSLDI" FT misc_feature complement(1469..1483) FT /note="putative N glycosylation site" FT misc_feature complement(1982..1996) FT /note="putative N glycosylation site" FT misc_feature complement(3407..3421) FT /note="putative N glycosylation site" FT misc_feature complement(3890..3904) FT /note="putative N glycosylation site" FT misc_feature complement(4685..4699) FT /note="putative N glycosylation site" FT 3'UTR 4775..4821 FT repeat_region 4812..4821 FT /rpt_type=INVERTED XX SQ Sequence 4821 BP; 1617 A; 828 C; 767 G; 1609 T; 0 other; agagcaatcg gtgcgccaat tatagataaa aatcattgaa atatcatcaa gaaataatgt 60 ctcgcttttc taacgttttg gattcctttc gtcttcaaaa taattcaagc aaagaattag 120 tccctgcagt caaaacagag aacagtagga gtcttttagc tagaaatgtt tctcaaaagg 180 atgttgacag tgctttacta aacaaagcaa aaacaataaa tgggaaacag tatgtttctg 240 gcggagattc tagtgtgcta ggcacatatt ctaatgaatt agctgtggaa gctacttcag 300 atgatatctt gtctagactt gttgttgagc aaagtaccca tttaagcaat tggaagaatg 360 attctcttgt tggcaatgga aatgataaag tcagttttac tataaatata atgcccacat 420 ggaacagtgg acggaggttt atgcacatat ccagacttat agtttgggtt gtcccaacca 480 tcccaaattc aaaaaacaac gttaaggcca ctctagttga tcaaaacaag atgaccaaat 540 ctgaaaaaat agttataagc aagcaagctt ctttgaaaga tcccatgtgt tttatttttc 600 atttaaactg gtctttccct aaagaaagga acactcctaa acaatgcatg caactcaatt 660 taacaagtga tgaaaagtat gccaaagggg ttagcttcgc atcagtaatg tattcatggg 720 taaagaactt ttgcgatact cctattgctt cagaaagtaa cacatgtgat gttgtgccaa 780 taaacagagc caaagtgatc caatcagctg ccttaattga agcatgtaaa ttaatgatac 840 ctaaaggaac tggaggaaaa caaatatcta atcaatttag aagcttacaa aaggttgcag 900 aaaaactagc aatggaggca gaaaatgaag aagagaatac tgatgtagat atagaaatgg 960 ataacttact tggaaattcg tgagttcatc aacaatacat atatttgtgc aagtaaaatc 1020 aaatattaat ttattaattt gtgtttgtgt gaatcaactt tagaaaatta aaaagaaaca 1080 aaaccaaaac aaaaataaaa taaaaataag taaaatagaa caaataaaaa caaaataaat 1140 aaagcaaata tgcttgtgtg tttaaatcta taatgtttta aatagatatt tgtatgtgca 1200 atatataaat aaaaggaaga aaaaacaaac aaaaattatc atatcttata taataaataa 1260 ggcttaggcc agatgttggc ttttcagcct ttttttggat ttttaattta ctttgcattt 1320 ttatcttatt ttatttattt atttgtttac ttatctattt attttctact tgtttataaa 1380 tacctacttt aaactgaata aatacatcct agatgtctaa agagaaatca taaccctttg 1440 gaggagatct cctttttcta gcctgatcaa ttccagtata atttgtcaaa agaacattag 1500 attccataga ctctatagca tcttctagtt tttgtctcct cttgtcaaca taatatgtct 1560 tagacaatct aaatatgcta ctcaaaatgt aaatacctat gcatgcagct gctataacta 1620 gaattaccct aaccaggtca aaaaagttcc cgaagaagga agctacccag ttaaaaggcg 1680 cttttatcca atcccataag ttagatatag aagtatcaga atgatgtatt ttctcatcat 1740 gtgcactctt atcatcaaag tgtatgatag tatcttgatc gatatgaatg aattcatcaa 1800 ctggaatatc cactgtgagc tcatcttgat cttcaggaat taaccttaaa gatttatctg 1860 caatctcatc tgagcaataa gcttttatgg actttttgtt aggacctaag aatgtgccta 1920 attgatcaga tttaaaagaa caagtatcca tcattaatct tgatgaaaag gttgtatcag 1980 aagtataagt tatattgcaa tcaatgccag cagcacattg agaacaacca gaacagatca 2040 tttttgcttc agaaataata ggctttgtgg ggatcttttt gaacatttcc ttaggcatgt 2100 ctataaccat tttaagttta cctaccaaaa aatcttttac catgtaaagt ttgttgttat 2160 attcatctat gtgagacaca tcttttgatg tgggtaaaac ataaatatta ctatatgtgt 2220 ataatccaca ttgtctgata ttaacttttc tttctcctac agtactgcag ctccaagtaa 2280 agtcatttgg cgataaggta gcaggaacag atagaagtat cccatccgct gtaatctggg 2340 gttgcccaaa tgatgatcct gcaaaatctc ttagatcagc tttatcccca gtgaggattc 2400 tttgttgttt gtctactgca aatagcttgt cagtgctcaa ataatcatta tgcaagtcca 2460 ctgacatgtc aagctgataa taatcagttt ggataggaga tctatcagaa tgttttttac 2520 aggaataccc atctaatgat ttcacgcaga tctctgccga cacatgactt tcaacaactt 2580 gatatacatt gaccaagctt gatagatcat atatgtttgt acaatgtcca caaatacctc 2640 cttcatttat tgccaaacat cctaattctt cacaacccca ccaagaagtc ggtgtaacac 2700 aaaagtctaa aactcccacc ttgggttttt gttttatgca atcattgcaa gtacctgtgc 2760 atgttaccag attttctgct acagttgtgt ctatttttgc agttgaatat ttatatctta 2820 tgtcatattc aacacctaca ctttttacat agaccataaa ttccatggga gaatgggtag 2880 catcatcatt aagaaaatag attgaacctg tattcgattt gatgtccatt tctattaaat 2940 atctatactt tccatcaacc tctgtagaaa atactaaaga ttgcctaggc attagatttt 3000 ctggaggtac atcatccact tttagccttt tataaaattt gtattcttta gcagactctt 3060 cttccaagat tatcgattct gtagtgctgt ccatatatcc atccctcaat ctattggcta 3120 tctttagact ggttagattg cctttgaaag attgacccct gtaaagctta ttgaatttga 3180 catttggtat gctttttata gattcaagag aattacaacc attcctacaa gcaaacaaat 3240 tctgagcttg attgtttctt accatgcaga gatctgagcc aagtacacaa tcattaagag 3300 atgttgctct agacataggg actccagatc gatataccgt ctcagttata acattaccta 3360 ttgaacagtc acaagactca tatccattgg atggcattcc aaacttatca gttgtcagat 3420 tatccaaatt tagattataa taacacttct caacacataa attctgttgt ttcatagcaa 3480 tactcgttgg tatatatgag atgagaattg atgccaatat catctttgtt ataaaaacta 3540 agaagttagt gctcaatttt gtgttaatta taaattgaaa ttgttgaatt aaagttagct 3600 tatgccattc aactttatct tttatgctaa gataacattc ctcagtgtga tctttagaag 3660 ccttgctttg gttacaaaca catttttctg tacaagagtg agttaagaat gaaaaacatc 3720 cacaaattct acattttaaa gggaaatatg gccataacca attaatagtc caaagaatag 3780 ggtatgtcag aatcccaagg atatcgtacc aaaggctcaa tgcatctttg gttttccaga 3840 tgagccatga tatagggaaa gcaatcataa gaaacacaaa aacccatcta aagtaagagg 3900 aatttgtgca gaataaaatt ttctttggtt catctgaata ttttgaaacg cagtttctca 3960 ctggtatatc taccttggca atcaagctag atttatcacc acaaaggaga aaatggttgc 4020 catcaagttc ttcaggttta aaattgatcg tagaatctcc aataattgac ttgacactct 4080 ctagtttaga gctttttata ttttttatca aaagtccaat attctcctca gatcttattt 4140 taatttgata gggagatgac attgatactt gatttatctt gcaatcacct gacaatctaa 4200 cagaaagtct tgcaactgta ggagacttta gatccacttt tggatcaatg tttataggat 4260 tgtttgattt atcaacaaag aagaattttg ttccgatttc aaggattttt ttgttctcta 4320 acttcagaac aggaaccact gggaaatttt tgaattttat ctttttgaac tctttatcat 4380 attggcaaat ctcaaatatg tttgaagagc tgcttatgca tgaaattatt tctttaccat 4440 tatcaatttg attgtgtgca ttaaagtcac ttacaccttt aatgacacag tacttttttt 4500 caaaactatc gcaactcaat tctgatgacg gtagatttgt tgttgcttca tcatttctta 4560 aaattctgga aagcttcttt cccttaggtt tctcagtttt gacaataaca ggctcttcta 4620 catcaataag gtcttctgga tcatctactt tgtacctatc ttgtatcctt ctcaactgga 4680 cattgttgtc tgattggttc cagaggtaga cctcagacac gaagaagagc gaatgtaaac 4740 ctagacagta gacgagtaga tagtattttc tcatctttta taaggaaatc caaagtatta 4800 aattggtgca ctgattgctc t 4821 //