ID FJ011449; SV 1; linear; genomic RNA; STD; VRL; 3105 BP. XX AC FJ011449; XX DT 03-MAR-2009 (Rel. 100, Created) DT 08-JUL-2010 (Rel. 105, Last updated, Version 2) XX DE Capsicum chlorosis virus isolate CaCV-Ch-Pan segment S, complete sequence. XX KW . XX OS Capsicum chlorosis virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Tospoviridae; Orthotospovirus; OC Capsicum chlorosis orthotospovirus. XX RN [1] RP 1-3105 RX DOI; 10.1007/s00705-010-0681-5. RX PUBMED; 20443030. RA Kunkalikar S.R., Sudarsana P., Rajagopalan P., Zehr U.B., Ravi K.S.; RT "Biological and molecular characterization of Capsicum chlorosis virus RT infecting chilli and tomato in India"; RL Arch. Virol. 155(7):1047-1057(2010). XX RN [2] RP 1-3105 RA Ravi K.S., Suresh K.R., Sudarsana P., Prem R., Usha Z.B.; RT "Characterization of Capsicum chlorosis virus from India"; RL Unpublished. XX RN [3] RP 1-3105 RA Ravi K.S., Suresh K.R., Sudarsana P., Prem R., Usha Z.B.; RT ; RL Submitted (12-AUG-2008) to the INSDC. RL Molecular Virology, Mahyco Life Sciences Research Center, Dawalwadi, Jalna, RL Maharashtra 431203, India XX DR MD5; fabdab71ab10abed85fc47b5bf27c2e8. XX FH Key Location/Qualifiers FH FT source 1..3105 FT /organism="Capsicum chlorosis virus" FT /segment="S" FT /host="Capsicum annuum" FT /isolate="CaCV-Ch-Pan" FT /mol_type="genomic RNA" FT /country="India" FT /collection_date="Jan-2008" FT /note="serogroup: WSMoV" FT /db_xref="taxon:163325" FT 5'UTR 1..66 FT repeat_region 1..10 FT /rpt_type=INVERTED FT CDS 67..1386 FT /codon_start=1 FT /product="nonstructural protein" FT /db_xref="InterPro:IPR004915" FT /db_xref="UniProtKB/TrEMBL:C0J8Z0" FT /protein_id="ACN38328.1" FT /translation="MSTVKSAASEFVKSYGTRDNRAINDCYSVFNGEGVNFLNLFMHNN FT AGIKSAFSINDLGRNEDIKIHEAEVVDTCHDYNYFEKFGLDITFCEHEMSLVVRKPGIK FT NTGCKFSMHNQIFNPNANTLSIAPGTTLEEGFYEKSKIKPIELLPSDWCLDECWKNNFY FT IAANGDFALDYGFSVMGKTTSYWRENISREKILSFKHKSLPDKTVPTNRLLSTSTVKGI FT QLGSELAPETTIICHANKNLGIDLKSQYRISFHGIQEEGAFARTFCIPFENKSRMICFY FT AKTVADNSNERTTLIIKIVTKTVDSHSMRPNRNHINCNKLLGARIGLVDFCDSDPNYNQ FT MIVKELLSVHTQFALNLSGALKKPIIVFKMYDKELINGHVEVSGRILNYQVDADGNVYF FT LSKTLEVLPRSLSTLSYLNSVAPTLWKESLEHQHFIVKPE" FT misc_feature 631..645 FT /note="N-glycosylation site" FT misc_feature 1132..1146 FT /note="N-glycosylation site" FT misc_feature 1387..2210 FT /note="intergenic spacer" FT CDS complement(2211..3038) FT /codon_start=1 FT /product="nucleocapsid protein" FT /db_xref="GOA:B3TQ90" FT /db_xref="InterPro:IPR002517" FT /db_xref="UniProtKB/TrEMBL:B3TQ90" FT /protein_id="ACN38329.1" FT /translation="MSNVKQLTEKKIRELLAGGTADVEIETEDSTPGFSFKTFYDNNKS FT VEMTFTNCLNILKCRKQIFAACKSGKYKFCEKTIVSTDANVGPEDWTFKRTEALIRVKM FT INMVEKNKNEAAKQEMYAKVMELPLVAAYGLNIPALFDSCALRMMLCIGGPLPLLSSIK FT GLAPIIFPLAYYQNVKKEKLGIKNFSTYEQVCKVAKVLSASQIEFKEDLNTLFRQAVKL FT LSESNPGTASSISLKKYDEQVKYMDKAFSANLSVDDYGVHSKKNSKPSTSLEV" FT 3'UTR 3039..3105 FT repeat_region 3095..3105 FT /rpt_type=INVERTED XX SQ Sequence 3105 BP; 1049 A; 516 C; 511 G; 1029 T; 0 other; agagcaatcg gggcatctaa taattcaaga aaaacaacga taagatcaag aaatactaat 60 tcaggcatgt ctactgtgaa gagtgctgct tcagaatttg tgaagagcta tggaacaagg 120 gataatagag ctatcaatga ttgctattct gtattcaatg gagaaggtgt caatttcctc 180 aatctgttca tgcataacaa tgcaggtatt aaatctgcat tcagcatcaa tgatttggga 240 aggaatgaag atatcaaaat ccatgaagct gaggttgttg atacatgcca tgattataat 300 tactttgaga aatttggttt agacataaca ttctgtgaac atgagatgag tttggtcgta 360 aggaaacctg gcataaagaa cacaggctgc aagttctcaa tgcataatca gatcttcaat 420 ccaaatgcca atactttgtc tattgctccg ggaacgaccc tagaggaagg tttctatgag 480 aaaagtaaga taaaacccat tgagctcctt ccctcagact ggtgcttgga tgaatgctgg 540 aagaacaatt tttacatagc tgctaatgga gactttgctt tggattatgg attctctgtg 600 atgggtaaaa caacttcgta ctggagagag aacatctcta gggaaaagat cttatctttc 660 aaacataaaa gtctccctga taaaactgtt ccaaccaata ggttgttatc cacatctact 720 gtaaagggca ttcaattggg ttctgagcta gctcctgaaa ctacaattat ttgtcatgca 780 aacaaaaatc ttggtattga tctaaaatct cagtatcgca tttcatttca tggtattcaa 840 gaggaaggtg cttttgctag aactttctgc attccctttg aaaacaaatc tagaatgatt 900 tgcttttatg caaaaacagt tgctgacaat agcaatgaaa gaacaacttt aattataaaa 960 atagtcacaa agactgttga ctctcattca atgagaccta acagaaatca tatcaactgc 1020 aataaactgt taggagcaag aattggttta gttgattttt gtgattctga tccaaattat 1080 aatcagatga ttgtaaagga gctgttaagt gttcataccc aatttgcact caatctatct 1140 ggagcattga aaaaaccaat cattgtattc aagatgtatg ataaggaatt gataaatggg 1200 catgtagaag tttcagggag gattctgaat taccaggtag atgctgatgg aaatgtttat 1260 ttcctctcaa aaacccttga ggtcctccca agatccctat caactttaag ttacttaaat 1320 agtgttgcac caacactatg gaaagaatcc ttagagcacc agcatttcat tgtgaagcca 1380 gagtaattca gctttatgtc cttgttctac ttaaggttat tgtgtgcatg ttgtttaata 1440 agcaactaat aagtgtttgc ttgtttaaaa tatataagta ttttaagtat tacagtataa 1500 tgttatcaaa tataagttta tataaataaa ataagctaat actaataagt gtaagttcaa 1560 taatcaagta taaattaaat aaataaataa aaacccataa aaatcaaaaa acaaaaaaac 1620 caaaaagacc tcgaaagagg caatcttggc ttaactgctt taatcaaaca tatttatcaa 1680 aagattttta acttggaatt catgcttcat ggaatttaaa atcttttgag tattttgatc 1740 tcatttatca actcatatga tttaatcaac acgaggaact atactgaatt tagatccttt 1800 aagtcctgtg aattaatccg agctagataa tcaattccgg aaataaagca aatctatgtt 1860 caagaccggc cacgggttgc ttccgaagag gtcttttttg gtttttctat tttttgattt 1920 ttttggattt tttaagtgtt ttgaatctaa tttgtctata gatacatgga tatacatatc 1980 ttaattataa tatatatcta tagttgtaaa cacacttata cttacttgag taattatata 2040 tatttatgtt tatgtgtata taactaataa gcacaaacaa taaaagtttt atatatttag 2100 tttataacat gacaatagat tagtatgaat tgacttataa ttgaatataa catacactta 2160 tatatatata aaaacatata ttttaatata agtagtcaca actatttaaa ttacacttcc 2220 agcgaagtgc taggctttga gttcttcttt gaatgaacac cataatcgtc cacagacaaa 2280 ttagcactaa atgctttgtc catatattta acttgctcat catacttctt aagtgagatg 2340 gaactagcag taccagggtt gctttcacta agcaacttga cagcctgtct gaacagtgtg 2400 ttcagatctt ccttaaattc tatttgagaa gcagaaagaa ctttagccac tttacaaacc 2460 tgttcatagg tagagaagtt tttgatgccc aatttctctt ttttaacatt ttggtaataa 2520 gctagtggga aaataattgg tgcaagaccc ttaatactgg ataatagtgg tagaggacca 2580 ccaatacata acatcatcct gagagcacat gaatcaaaca aagcaggtat gttcaatcca 2640 tatgctgcca ctaaaggtaa ttccattacc tttgcataca tctcttgttt agcagcttca 2700 tttttattct tctctaccat gttgatcatc ttaactctta tcaaagcttc tgttctctta 2760 aaagtccaat cctctggacc aacattagca tccgtagaaa caattgtttt ttcacagaac 2820 ttatactttc cacttttgca agcagcaaaa atctgctttc tacacttcaa aatattaaga 2880 cagtttgtga atgtcatttc aacgcttttg ttattatcat agaatgtctt gaaactgaat 2940 ccaggagttg aatcctcagt ttcaatttca acatctgcag ttccaccagc caagagttct 3000 ctaattttct tctcggtaag ttgcttgacg ttagacatgg tgtttactat ggaaacgttt 3060 aatatgatga ctttaatcgg attttattag cgcctcgatt gctct 3105 //