ID EU921828; SV 1; linear; genomic DNA; STD; VRL; 2959 BP. XX AC EU921828; XX DT 29-AUG-2008 (Rel. 97, Created) DT 11-APR-2025 (Rel. 144, Last updated, Version 3) XX DE Beet curly top virus, complete genome. XX KW . XX OS Beet curly top virus OC Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; OC Geplafuvirales; Geminiviridae; Curtovirus. XX RN [1] RP 1-2959 RX DOI; 10.1007/s00705-009-0320-1. RX PUBMED; 19198754. RA Lam N., Creamer R., Rascon J., Belfon R.; RT "Characterization of a new curtovirus, pepper yellow dwarf virus, from RT chile pepper and distribution in weed hosts in New Mexico"; RL Arch. Virol. 154(3):429-436(2009). XX RN [2] RP 1-2959 RA Lam N., Creamer R.; RT ; RL Submitted (24-JUL-2008) to the INSDC. RL Department of Entomology, Plant Pathology, and Weed Science, New Mexico RL State University, 945 College Ave, Las Cruces, NM 88003, USA XX DR MD5; a7faa10ef9f84584084af7ae56d5d284. XX FH Key Location/Qualifiers FH FT source 1..2959 FT /organism="Beet curly top virus" FT /host="chile pepper" FT /mol_type="genomic DNA" FT /geo_loc_name="USA: New Mexico" FT /PCR_primers="fwd_seq: accacctttaatgacacgt, FT rev_seq:gcattaaatgcaggtaatgca" FT /PCR_primers="fwd_seq: ccgcaatctgaacatgaggacta, FT rev_seq:aaccacaacctccgcaaatc" FT /PCR_primers="fwd_seq: cagtatcgaccagttgttt, FT rev_seq:ctcttcgaatacgataagtag" FT /PCR_primers="fwd_seq: ctattgggggctctcgtaaactt, FT rev_seq:atatttgtcggccacaacttttga" FT /db_xref="taxon:10840" FT gene 258..524 FT /gene="V3" FT /note="PeYDV V3" FT CDS 258..524 FT /codon_start=1 FT /gene="V3" FT /product="movement protein" FT /protein_id="ACH48055.1" FT /translation="MMVCLPDWLFLLFIFSILLQSGTNFYGTFQSGSISRQLSSLSSSI FT DQLFLKVQQVVYTRYPSRDRASDPRRRRGLSAIPEGSEEGTEV" FT gene 334..714 FT /gene="V2" FT /note="PeYDV V2" FT CDS 334..714 FT /codon_start=1 FT /gene="V2" FT /product="ss-ds DNA regulator" FT /protein_id="ACH48056.1" FT /translation="MGPFRVDQFPDNYPAFLAVSTSCFLRYNRWCILGIHQEIEPLTLE FT EGEVFLQFQKEVKKVLRCKVNFHRKCSLYEEIYKKYVHNVPEKKGESSKCVAEEEEDYY FT DFEEIPMEETCDKKQDSEVKDV" FT gene 554..1318 FT /gene="V1" FT /note="PeYDV V1" FT CDS 554..1318 FT /codon_start=1 FT /gene="V1" FT /product="capsid protein" FT /protein_id="ACH48057.1" FT /translation="MRKYTRNTYTMSQKRKVNPQSAWPKKRRTTTTSRKYQWRRPVTKN FT RTPKLKMYDDMLGAGGIGSTISNNGMITMLNNYVQGIGDSQRSTNVTLTKHLKFDMALM FT GSSAFWETPNYMTQYHWIIIDKDVGSVFPDKLDSIFDIPSNGQAMPSTYRIRRDMNERF FT IVKKKWTTHLMSTGTAYGGRDTYKGPSMPNYKKPMNINVRNLNVRTIWKDTGGGKYEDV FT KENAIIYVVVNDNTDNTNMYATLFGNCRCYFY" FT gene complement(1358..1768) FT /gene="C3" FT /note="PeYDV C3" FT CDS complement(1358..1768) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancer protein" FT /protein_id="ACH48058.1" FT /translation="MNVIRDFRTEEPITLQQATNSVPVASVPNPLYFKLLWFERYGTVY FT QLKVQIRFNHNLRQSLNLHKCWMDLTITGSHRTLTGDRFLRVLKSQVDLAIRRRSSLSI FT NIVIDILNHVLYNALNFVESVIQYTSIAMKLY" FT gene complement(1455..1898) FT /gene="C2" FT /note="PeYDV C2" FT CDS complement(1455..1898) FT /codon_start=1 FT /gene="C2" FT /product="C2 protein" FT /protein_id="ACH48059.1" FT /translation="MKPLSPGHYKIQSSPNSAVLSLIKIQKRPRKVNLPCKCHFTIHHE FT CNQGFSHRGTYHASTGDEFCSRGFSTESTLLQTPLVREVRNGIPTQSPDQIQPQPPPIL FT ESSQVLDGFDDHWITQDIDWRPFFESLEEPSGLGNQKTIFSLN" FT gene complement(1789..2865) FT /gene="C1" FT /note="PeYDV C1" FT CDS complement(1789..2865) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /protein_id="ACH48060.1" FT /translation="MPRSPSFQIRAKNVFLTYPRCSIIKEDALEILKNIPCPSDKLFIR FT SFQEKHKDGTLHLHALIQFKGKAQFRNPRYFDITHPFNSTTFHPNLQGAKVTSDVKQYI FT EKDGDYIDWGTFQVDGRSARGGQQTANDAAAEALNAGTAAEALQIIREKLPEKFIFQYH FT NLKPNLEAIFLPPPDIYQPPLSLSSFTRVPEIIQEWADSYFGVDAAARPFRYNSIIIEG FT DSRTGKTMWARSLGPHNYISGHLDFSLKTYNDDVLYNVIDDVDPNHLKMKHWKHLIGAQ FT REWQTNLKYGKPRVIKGGIPSILLCNPGEGSSYQDFLDKSENEALKSWTLQNSIFAKLS FT GPLFDKDTETSSQGQSPL" FT gene complement(2451..2708) FT /gene="C4" FT /note="PeYDV C4" FT CDS complement(2451..2708) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /protein_id="ACH48061.1" FT /translation="MGLCISTPSSSSKVKPNSETPDISTSLIPSIAPPSTPTFRELRSL FT PMLNNTSRRTVITSTGVHFKSTDDLLEEASRQLMMLQQRH" XX SQ Sequence 2959 BP; 862 A; 535 C; 665 G; 897 T; 0 other; accggatggc cccgaaaatt ttgccctccc atttactaaa tgacacgtgt aatcgcacta 60 agtctgtcgg ccaataatgg agggaacacg tggagagttt gcatgtttgt tggcgtggta 120 gtaaaaaaac atagccgaca ttgatctcat gactctagtt ctacatatcg tattcgacga 180 gcattcaaac ttgctctgta agtttggaat attatttcta cttaaatagc tataccaata 240 cgtataggta tttataaatg atggtctgtt taccagactg gttatttttg ctatttatct 300 tcagtattct actgcaatca ggtacgaact tttatgggac ctttcagagt ggatcaattt 360 ccagacaatt atccagcctt tctagcagta tcgaccagtt gtttcttaag gtacaacagg 420 tggtgtatac taggtatcca tcaagagata gagcctctga ccctagaaga aggcgaggtc 480 tttctgcaat tccagaagga agtgaagaag gtactgaggt gtaaggtcaa ctttcatagg 540 aagtgttcgt tgtatgagga aatatacaag aaatacgtac acaatgtccc agaaaagaaa 600 ggtgaatcct caaagtgcgt ggccgaagaa gaggaggact actacgactt cgaggaaata 660 ccaatggagg agacctgtga caaaaaacag gactccgaag ttaaagatgt atgatgatat 720 gcttggtgct ggtggtatag gatctaccat tagtaataat ggtatgatca ctatgttgaa 780 taattatgtg cagggtattg gtgatagtca gagatctact aatgtgacgt tgaccaaaca 840 cctgaagttt gatatggccc ttatgggcag ttcagctttc tgggaaactc ccaattatat 900 gacccaatat cattggatca taattgataa ggatgttggg tctgttttcc ctgataagct 960 ggattctata tttgatatac cgtccaacgg tcaggctatg ccctcaacgt atcgtattag 1020 aagagatatg aacgagaggt tcattgttaa gaagaaatgg acaacccatt tgatgtctac 1080 tggaactgct tatggtggac gtgataccta caagggtcct tctatgccaa attacaagaa 1140 gcctatgaat atcaatgttc gcaacctgaa tgtgaggact atttggaaag ataccggtgg 1200 tggcaagtat gaagatgtca aggagaatgc tataatttat gttgttgtta atgataatac 1260 agacaatacg aatatgtatg ccactttgtt tggcaattgt agatgctact tctattaata 1320 aaattatttt tatttatatt ggatgttaca ataacattta atacaacttc attgcaatac 1380 tagtatactg aattacactc tcaacgaaat ttaaagcatt gtacaataca tgatttaaaa 1440 tatctattac aatattaatt gagagagaag atcgtcttct gattgccaag tccacttggc 1500 tcttcaagac tctcaaaaaa cggtctccag tcaatgtcct gtgtgatcca gtgatcgtca 1560 aatccatcca gcacttgtga agattcaagg attggcggag gttgtggttg aatctgatct 1620 ggactttgag ttggtatacc gttccgtacc tctcgaacca aaggagtttg aagtagagtg 1680 gattcggtac tgaagccacg ggaacagaat tcgtcgcctg ttgaagcgtg ataggttcct 1740 cggtgcgaaa atccctgatt acattcatga tgaattgtga agtggcactt acaggggaga 1800 ttgaccttgc gaggacgttt ctgtatcttt atcaaagaga ggaccgctga gtttggcgaa 1860 gattgaattt tgtaatgtcc aggacttaag ggcttcattt tctgatttat ctaggaagtc 1920 ctggtaagag cttccttccc ctgggttgca taataaaata ctggggatac cacctttaat 1980 gacacggggt ttcccatact ttaagtttgt ctgccactct ctttgtgcgc caatgaggtg 2040 cttccagtgc ttcatcttta agtgattggg atcaacgtca tcaatgacgt tatacaatac 2100 atcatcatta taagttttta aactaaaatc taaatgccct gatatgtaat tgtgtggacc 2160 taaagatctg gcccacatag tcttaccagt tcttgaatca ccctctatga ttatactatt 2220 atatctaaaa ggccgcgcag cggcatcaac accaaaataa gaatcggccc actcttgaat 2280 aatttctgga acccgagtga aagaagaaag agagagaggg ggttgataaa tatctggagg 2340 aggaagaaaa atggcttcta aattaggctt aagattatga tactggaaaa taaatttttc 2400 tgggagtttc tcccttatta tttgcagagc ttctgccgca gtacctgcat ttaatgcctc 2460 tgctgcagca tcattagctg tctgctggcc tcctctagca gatcgtccgt cgacttgaaa 2520 tgtaccccag tcgatgtaat caccgtcctt ctcgatgtat tgtttaacat cggaagtgac 2580 cttagctccc tgaaggttgg ggtggaaggt ggtgctattg aagggatgag tgatgtcgaa 2640 atatctgggg tttctgaatt gggctttacc tttgaactgg atgagggcgt ggagatgcag 2700 agtcccatct ttatgttttt cctggaaact cctaataaat aatttatcag atgggcaagg 2760 aatatttttc aatatctcga gagcatcttc ttttataatc gaacaccgtg ggtatgtgag 2820 aaagacattc ttggctctaa tttgaaaaga aggcgaacga ggcatggtta ctgtttgtat 2880 tgggggctct ccaaaacttg tatgaatggg gtgctttggg agcccttata taccctcagg 2940 ggccatccgc aataatatt 2959 //