ID EU914104; SV 1; linear; genomic RNA; STD; VRL; 7207 BP. XX AC EU914104; XX DT 31-JUL-2009 (Rel. 101, Created) DT 04-DEC-2009 (Rel. 103, Last updated, Version 2) XX DE Morogoro virus strain 3017/2004 segment L Z protein (Z) and polymerase (L) DE genes, complete cds. XX KW . XX OS Morogoro mammarenavirus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Arenaviridae; unclassified Arenaviridae. XX RN [1] RP 1-7207 RX DOI; 10.3201/eid1512.090864. RX PUBMED; 19961688. RA Gunther S., Hoofd G., Charrel R., Roser C., Becker-Ziaja B., Lloyd G., RA Sabuni C., Verhagen R., van der Groen G., Kennis J., Katakweba A., RA Machang'u R., Makundi R., Leirs H.; RT "Mopeia virus-related arenavirus in natal multimammate mice, Morogoro, RT Tanzania"; RL Emerg. Infect. Dis. 15(12):2008-2012(2009). XX RN [2] RP 1-7207 RA Gunther S., Leirs H.; RT ; RL Submitted (20-JUL-2008) to the INSDC. RL Virology, Bernhard-Nocht-Institute for Tropical Medicine, RL Bernhard-Nocht-Str. 74, Hamburg 20359, Germany XX DR MD5; 5615b25aa22d6085e7140e65933a40af. DR EuropePMC; PMC3044542; 19961688. DR EuropePMC; PMC3321973; 20350390. XX FH Key Location/Qualifiers FH FT source 1..7207 FT /organism="Morogoro mammarenavirus" FT /segment="L" FT /host="Mastomys natalensis" FT /strain="3017/2004" FT /mol_type="genomic RNA" FT /country="Tanzania:Morogoro" FT /collection_date="2004" FT /db_xref="taxon:573900" FT gene 57..368 FT /gene="Z" FT CDS 57..368 FT /codon_start=1 FT /gene="Z" FT /product="Z protein" FT /db_xref="GOA:C6ZK02" FT /db_xref="InterPro:IPR003224" FT /db_xref="InterPro:IPR024183" FT /db_xref="InterPro:IPR038485" FT /db_xref="UniProtKB/TrEMBL:C6ZK02" FT /protein_id="ACJ24975.1" FT /translation="MGKSQSKATLRERESSPRENRQPIIPDARGTGPEFCKSCWFERRG FT LVRCHDHYLCLNCLTLLLTVSNRCPLCKHSLPQRLELHPQPTAPPEAMPSQQPPPYQP" FT gene complement(463..7161) FT /gene="L" FT CDS complement(463..7161) FT /codon_start=1 FT /gene="L" FT /product="polymerase" FT /note="L protein" FT /db_xref="GOA:C6ZK03" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR010453" FT /db_xref="InterPro:IPR026382" FT /db_xref="UniProtKB/TrEMBL:C6ZK03" FT /protein_id="ACJ24976.1" FT /translation="MEELLGECKDLISKYLAGDERLSQQKLAFLVQTEPKMLLIEGLKL FT LSLCIEIDSCQANGCEHNTESLSVELILQKKGVLCPGLAFVVPDGFKFSGNTLILLECF FT VRTSPTNFEQKYREDMVKLEALKSDLNSVDIVLLPLIDGRTSFHTELFPEWANEKFRNN FT LFSLLEYSQQSSRMFEESEYSRLCESLTKTGVRTSGIESLNILSDSRADHHERLLQLCH FT RGLNNRMTPLEVRKEIILEYQAFRNKLREESIPRQFVKTDRIKLLDDFNTLYVDREGDG FT PHNLNVLRERFIWSSPIVTALYGDYGSVHLGEGGDLPTSSCVAGWKSLLNKIKSLKLLN FT TRRKLLLTFDTIILLAHLRDEKQLGSMVSSEWLGSSFLSVNDRLVSLEATQRELKNWLS FT RRRDNIVKKGHPQPQNLSMCFYDIIKKLLTRAEEMLKVVNLSFCDYVTETDILERESFE FT KLIHLERRGVQPTMSYERLCERDFPYPLLDIDSQGQNDLKRLSSISLALVNSMKTSSVA FT KVRQNEHGAARYKKVRCKEAFNQSFVMGEKRFNLIYQKTGEGSKCYAINNSERGEVCSF FT YADPKRFFPAIFSQDVISKVLDAMSSWLSDCVELKEQEASLKLLLKMVIILILANPSKR FT AQKFLQGLRYFIMAFVSDYHHKQLMEKLREDLITDSEYLLYSVVRTIFSIVLDNKVTTM FT LTNRFKYVLNLSYMCHFITKETPDRLTDQIKCFEKYLEPKLEFDSLNVNPKESGDEEEK FT LLLLNSAEKFLSKPDCLTGDTISYKQPGVSRKLFSMMTSSFNNGSLTKGGDLKGGFKDP FT LVTAGCATALDLASNKSVVVNKYSDGERVLNYDHDKLVATSVCQLSEVFERKTKYLLNK FT EDYDYKVQKTLTDLVIGTKKDKQGGGKSGEVEQLDEVLLSSDALGCLEEVKESIDTVLN FT RYKFDRALDDKKEHIEGEHKSLTDLKKVMEVKGFHSTHYNLIQAEITHHTIEDFDESVL FT PNGSYQLISEGFYENLDLRNRYFYLDSLESCPIRCITQAVSTRTLNEGQYFQCFKSLLL FT QMNAGRLTGKYSHYKNKCLNFKIDRERLMSDVRISERESNSEALGKALSLTNCTTAVLK FT NLCFYSQESPQSYTSLGPDTGRLKFSLSYKEQVGGNRELYIGDLRTKMFTRLIEDYFEA FT LTKQYKGSCLNDENEFSNAILAMKLNVSLAQVSYSLDHSKWGPMMSPFLFLVFLQNLHW FT ETQDDLGDIKSKDHISTLLSWHIHKLIEVPFNVVNAMMKSYLKSRLGLKRTFHETITES FT FFFESFRVDEVPSHLSSIIDMGQGILHNTSDFYGLISERFINYCIKCLFEEGVESFTSS FT DDQITLFGKGLTELMGSDSEEFQNILEFHYYLSDRLNKFISPKSVVGTFVAEFKSRFYV FT WGDEVPLLTKFVAAALHNVKCKDPHQLAETIDTILDQSIANGVPVSICNALQVRTIDVL FT KYAQYPIDPFLMFLNSDVKDWVDGBRGYRIMRNIEGILPRGTEKVRKILRVVFNKLKTG FT ELHEEFTAIYLSGDPVESFTKLSELIGESELQKDDLSVCWLNLTAHHPLRMVMRQKVLY FT TGAISVEDEKLPTLVKTLQSKLSSGFTRGAQKLLCEAVNKSAFQSSIASGFVGLCKTLG FT SKCVRYLDKTTTYIRSLISRLSEIQGVKKLKLGGVDLWDTRELTDSIPEDLAGYLRPVL FT WDYFCISLSTSLELGPWVLGEPKIKSKKPNINFNPCDYFPMKPTHTRLLEDKVGFNHII FT HSFRRLYPSIYEKHLLPFMSDLASTKMKWTPRIKFLDLCVVLDVNCEAMSLISHVVKWK FT REEHYIVLSSDLAVAHDRTHLPLTDERVVTTYDVVQNFMRQVYFESFVRPFVATSRTLG FT SFTWFPHKSSLPESEGLGLLGPFSSFVEKVIYKGIERPMYKNDLHSGYAWLDFECSPAV FT VNLSQLIACGLTQQKICREPEELFDLLSEVSTGGVQITLTINFQVKSQGESLSEKFSIH FT LLWKGEILEGGVFKPYSLEGMYSGKVHRSALVDCWRLAQTSSWFKRDCRSMWQLSTENL FT CEYLADSHSIPDAIPLPVFLEGEIMCLDVYDFNHVGPDYDDIPLVVDSGYLLEGTRKLI FT PFNPKIFDQDLRVFIGELSEDHRDVLIDSLSRMIKSRVEQSLHWLQVDIVGVVEETMPG FT SHADFLNEVMSRTDGWVDFKGYSLCFSKSLGKVMVQSSEGTLRLKGRLCRSLHDNPPPP FT EDID" XX SQ Sequence 7207 BP; 2041 A; 1702 C; 1319 G; 2143 T; 2 other; aattctgaca cccataacat tgtgttttca acaagcacaa gccgaggaca gccaacatgg 60 ggaagtccca atccaaggcc accctcagag agagggagtc aagtccaaga gagaataggc 120 agcctataat accagatgca agagggactg ggccagaatt ttgcaaaagc tgctggtttg 180 agaggagagg ccttgtgaga tgtcatgacc attacctctg tctaaattgt ctcacactgc 240 tactcacagt atccaacaga tgccctcttt gcaaacacag cctgccccaa aggctggagc 300 ttcacccaca gcccacagca ccccccgagg caatgcccag ccagcaaccc cccccatacc 360 agccctgaac accccgaaag caccccagac agccccaccc ctcccccccc ggggggaacc 420 cccgccgggg ctccccccgg gggagcgaag agcgcgcggg catcagtcaa tgtcctccgg 480 aggaggtggg ttgtcatgca gggatctgca caatctgccc ttcagcctga gtgttccctc 540 tgagctttgg accatcacct tccccaacga tttactaaaa cacaaactgt accctttgaa 600 atcaacccaa ccgtctgtcc ttgacatcac ctcattgagg aaatctgcat gactcccagg 660 cattgtttcc tccacaaccc cgactatgtc cacctgcagc cagtgaagag actgctccac 720 ccttgattta atcattcttg acagagagtc aatcaacaca tcccggtgat cctctgagag 780 ctctcctatg aaaactctca aatcctggtc aaaaatcttg gggttgaagg ggatcaactt 840 tcttgtcccc tcaaggagat aacctgaatc aaccacgaga ggtatgtcat catagtctgg 900 cccaacatga ttgaaatcat acacatccaa acacattatc tccccctcca ggaatactgg 960 caatgggata gcatcaggaa tcgagtggct gtcagctaaa tattcacaca ggttttctgt 1020 ggatagttgc cacatacttc tgcagtctct cttgaaccaa gatgaggtct gagctagcct 1080 ccaacaatct accagggctg atctgtgaac tttgccacta tacatgcctt ccagtgagta 1140 gggcttaaaa acacccccct ccaggatttc gcctttccac aagaggtgaa tggagaattt 1200 ctcagacagt gactcccctt ggctcttaac ctgaaagtta atcgttaatg taatctgcac 1260 accaccagtg ctcacctcag agaggagatc gaatagctct tcaggctcac gacaaatttt 1320 ttgctgtgtt aaaccacatg ctatgagttg acttagattg accacagcag gagaacattc 1380 aaagtccaac catgcatagc cagaatgaag atcattttta tacattggtc gttcaattcc 1440 tttgtaaatg actttttcta caaaagatga gaagggtccc aacagcccta aaccttcgga 1500 ctcaggcaat gaggacttgt gtgggaacca agtgaatgaa cccaatgtcc tacttgttgc 1560 cacaaatggc cttacgaaag actcaaaata cacttgcctc atgaaatttt gaacaacatc 1620 ataagtcgtc actactctct catctgtgag gggcaaatgc gttctatcat gagccacagc 1680 caaatcagaa gataaaacaa tatagtgttc ttctctcttc catttaacta catgtgatat 1740 taatgacata gcttcgcaat ttacatcaag caccacacat agatctagga attttatcct 1800 tggagtccat ttcatctttg tggatgctaa atcactcata aatgggagta gatgtttttc 1860 ataaattgat gggtaaagtc ttctgaagga gtggattata tggttgaatc ccaccttgtc 1920 ttcaagaagc cttgtgtggg ttggcttcat gggaaaataa tcacatggat tgaaatttat 1980 attaggcttt ttacttttta tcttaggctc ccccaaaacc catgggccca attcaagaga 2040 agtggatagt gagatacaaa aatagtccca taatactggc cttaagtaac ctgctaaatc 2100 ctcggggata ctgtctgtaa gctcccttgt gtcccacaag tccacccctc ctagcttgag 2160 ctttttgacc ccctggatct cagacaatct agaaatcaat gaccttatgt atgtggtggt 2220 tttatctaga tacctgacac acttactccc tagagtcttg cacaggccca caaaaccaga 2280 tgcaatagag ctttgaaatg cacttttgtt gacagcctcg cataacagct tttgtgctcc 2340 tcttgtgaag cctgatgaaa gtttactctg taatgtcttc actaaagttg gtagtttttc 2400 gtcttcaaca ctgatggctc ctgtgtatag cactttttgt ctcatgacca tccgtaatgg 2460 atggtgtgca gtcaagttta accagcaaac ggataaatca tccttttgaa gttcagattc 2520 acctatgagt tcgcttagtt tagtgaatga ttccactggg tcaccagaca agtaaatagc 2580 tgtgaattct tcgtgtaatt cacctgtctt tagcttatta aataccactc tgagaatctt 2640 ccttaccttc tcagtacctc ttggtagtat gccctcaatg ttcctcataa ttctgtaccc 2700 tctgtygcca tcaacccagt ctttaacatc tgagttcaga aacattaaaa agggatctat 2760 gggatactga gcatatttta aaacatctat tgttcgcacc tgtagagcat tacatataga 2820 aacaggcaca ccatttgcta ttgactgatc cagaattgta tcaatcgtct cagcgagctg 2880 atgggggtct ttgcatttta cgttgtgaag agcagcagca acgaatttgg ttaaaagggg 2940 tacttcatca ccccaaacat aaaatctaga tttgaactca gcaacaaagg tccctaccac 3000 actcttagga cttatgaatt tgttaagcct gtcacttaaa tagtagtgaa actctaagat 3060 gttttgaaat tcctcggaat cacttcccat tagttccgtc agccccttgc caaagagggt 3120 tatttgatca tcacttgatg tgaaggattc aacaccctct tcaaacaagc actttatgca 3180 gtaatttatg aatctctcac taatcaaccc ataaaaatct gaggtattgt gcaatatgcc 3240 ctgacccatg tcaataatgg aactcagatg tgatggtacc tcatcaactc taaagctctc 3300 gaagaagaag gactctgtga ttgtctcatg aaaagttctc ttcaaaccta acctagattt 3360 gaggtaggac ttcatcattg cattgacaac attgaaagga acttcaatca atttgtgaat 3420 gtgccaagat aacaaagtac taatatggtc tttgctttta atgtctccaa ggtcatcttg 3480 tgtttcccag tgcaggttct gtaaaaacac caagaataga aatggggaca tcattgggcc 3540 ccacttacta tggtctaaac tatatgaaac ctgagccagt gagacattga gcttcattgc 3600 cagaatggca ttgctaaact cattctcatc atttaagcaa ctccccttgt attgcttagt 3660 caatgcctca aaataatctt ctatcagtct ggtgaacatc ttggtcctga ggtcccctat 3720 ataaagctct ctatttcccc caacttgctc tttgtaggac aatgagaact ttaacctccc 3780 agtatcaggt cccaacgatg tgtaagattg tggtgactct tggctgtaaa agcataaatt 3840 ctttagcact gctgttgtgc aattagttag tgagagtgct ttcccaagtg cttctgaatt 3900 actctctctc tcactaatcc taacatcact catcaacctc tctctgtcaa ttttgaaatt 3960 cagacacttg ttcttataat gagaatactt gccagttaat cttccagcat tcatctgtag 4020 taatagagat ttaaaacatt gaaagtactg accttcattg agtgtcctag ttgacacagc 4080 ctgggtaata catctgatag gacaagattc cagagaatca agatagaaat acctattcct 4140 caaatctaga ttttcataaa acccttctga gatcagttgg taagacccat tgggcaaaac 4200 tgattcatca aagtcctcta tagtatgatg ggttatctca gcctgaatta aattgtaatg 4260 ggtgctgtga aatcctttga cctccataac tttcttcaaa tcagttagtg atttatgttc 4320 tccttctata tgttccttct tgtcatctaa ggctcgatca aatttgtacc tgttcagtac 4380 agtgtcaatt gattctttaa cctcttcaag gcaccctaat gcatcactac tcagtaagac 4440 ttcatctagc tgctcaactt caccactctt accacctccc tgcttatcct tcttggttcc 4500 aatcaccaaa tcagtgaggg ttttctgaac tttgtagtca taatcttctt tattaagtaa 4560 gtactttgtt ttcctctcaa acacttcaga cagttggcaa acagaggtgg ctactaattt 4620 gtcatggtcg taattcaata ccctctcacc atctgaatac ttatttacaa ccacactctt 4680 attgctggca aggtctaatg ctgttgcaca cccagcggtg accaaggggt ctttgaaccc 4740 acctttgaga tctcctcctt ttgtcaatga tccattgttg aatgaggagg tcatcattga 4800 gaataatttt ctagacacac ccggttgttt ataggagatt gtatcacctg ttagacaatc 4860 cggtttagag aggaacttct cagcggagtt taacaacaag agtttttctt cttcatctcc 4920 tgattcctta ggattcacat tcaagctgtc aaactctaac ttaggctcta aatacttctc 4980 aaaacacttg atttggtctg tcaatctatc cggagtttct ttggtgatga agtggcacat 5040 atatgaaagg tttaaaacat atttaaacct atttgttagc atagttgtca ccttgttgtc 5100 gagaacaatt gagaaaatag ttctaactac actatagaga aggtattcag aatcagttat 5160 cagatcctcc ctcaacttct ccattagctg cttgtggtga tagtctgaca caaaagccat 5220 tatgaagtac ctcaaacctt gcaaaaactt ttgagccctt ttgctagggt tggctaaaat 5280 gaggattatg accattttta ataacaattt caagcttgct tcctgctctt ttagttcaac 5340 acaatcagaa agccagcttg acatggcatc cagtaccttg gatatcacat cttgtgaaaa 5400 aatggctggg aagaatcttt taggatctgc ataaaatgaa caaacttctc cacgctcaga 5460 gttgttgatg gcgtaacatt tagaaccttc accggtcttt tgataaatga gattaaaacg 5520 cttttctccc ataacaaaac tttgattaaa ggcctcttta catctgactt tcttgtacct 5580 agctgcaccg tgctcattct gtctaacttt tgcaacagaa gatgttttca tcgagttcac 5640 caatgccaga gagatactcg aaagtctttt taagtcgttc tgaccctggg agtcaatatc 5700 aagtagtgga tatgggaagt ccctttcaca aagtctttca taactcatcg tgggctgaac 5760 ccccctcctc tctaggtgaa tcagtttttc aaagctctct ctttccaaga tgtcagtctc 5820 agttacataa tcgcaaaaac tcaaattcac cacctttagc atttcctctg ccctggttaa 5880 gagtttctta atgatgtcat agaagcacat actcaaattc tgaggctgtg gatggccttt 5940 ctttactatg ttatcccttc tcctgctcaa ccagttcttc aattccctct gagtagcctc 6000 aagtgacacc aacctatcat taacacttag aaaagaagat cccaaccact cggagctaac 6060 catgctcccg agttgtttct catcccttaa gtgggctaag agtattatgg tatcaaaggt 6120 tagtagaagc tttctcctag tgttcaatag tttgagggat ttaatcttat tgaggagaga 6180 tttccagcca gcaacacaac tggaagttgg caagtcccca ccctcaccta ggtgaacaga 6240 rccataatca ccatacaatg ctgttacaat tggagaggac cagataaatc tttcccttag 6300 cacgtttaaa ttgtgaggac catcaccttc tctatctaca taaagggtgt taaaatcatc 6360 tagaagctta attctgtctg ttttaacaaa ctgtctgggg atgctttcct ctctgagttt 6420 atttctgaat gcttggtatt ccagaatgat ttcttttcga acctcaagtg gtgtcattct 6480 gttattcaac cccctgtgac acagttgcag caacctttca tgatgatctg ctctagaatc 6540 tgataaaatg ttaaggctct caatcccaga tgttctgact cccgtctttg tcaaggactc 6600 acacaacctt gagtactctg actcttcaaa catcctagat gattgttgag aatactcaag 6660 cagagagaat aaattatttc taaacttttc attagcccac tcgggaaata attctgtgtg 6720 gaagctggtt ctaccatcta tgaggggtag tagcactatg tcgacagaat taaggtcaga 6780 tttcaatgcc tcaagcttca ccatgtcttc tctatatttt tgctcaaaat tggtgggaga 6840 tgttcttaca aaacattcaa gcaagattaa tgtgttgcct gaaaacttga atccatcagg 6900 aaccacgaaa gctaagccag ggcataggac ccctttcttc tgtagtatga gctccactga 6960 cagggactct gtgttatgtt cacatccgtt ggcttgacag ctatctatct caatgcagag 7020 ggacaaaagc ttcagtccct ctatgagaag catttttggc tcagtttgca caagaaatgc 7080 taacttttgt tgagagagtc tttcatcacc tgccaagtat ttgcttatca agtccttaca 7140 ttctcctaaa agctcttcca ttgctgatgt tctcacacac cagtaacata tgtaatgaga 7200 gtcaaat 7207 //