ID EU884191; SV 1; circular; genomic DNA; STD; VRL; 7522 BP. XX AC EU884191; XX DT 17-SEP-2008 (Rel. 97, Created) DT 17-SEP-2008 (Rel. 97, Last updated, Version 1) XX DE Citrus yellow mosaic virus from India, complete genome. XX KW . XX OS Citrus yellow mosaic virus OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RP 1-7522 RA Baranwal V.K., Singh J.; RT "Molecular characterization of Citrus yellow mosaic virus (CMBV) infecting RT Rangpur lime"; RL Unpublished. XX RN [2] RP 1-7522 RA Baranwal V.K., Singh J.; RT ; RL Submitted (06-JUN-2008) to the INSDC. RL Plant Virology Unit, Division of Plant Pathology, Indian Agriculture RL Research Institute, Pusa Road, New Delhi, Delhi 110012, India XX DR MD5; e225db0c340a03e2a1f613751ad105b5. XX FH Key Location/Qualifiers FH FT source 1..7522 FT /organism="Citrus yellow mosaic virus" FT /host="Rangpur lime" FT /mol_type="genomic DNA" FT /country="India:Tirupati, Andhra Pardesh" FT /db_xref="taxon:174178" FT CDS 232..663 FT /codon_start=1 FT /product="unknown" FT /note="ORFI" FT /db_xref="InterPro:IPR010746" FT /db_xref="UniProtKB/TrEMBL:B3EYP0" FT /protein_id="ACH86205.1" FT /translation="MSRIWEEAIQRWYETSHTANLEYLDLASKPKVSNSEISHNLAVVY FT DRLSLFSRVSIKNFKSIQETLEKQDLRIQKLESSLKTLTSEFIAHKPLSKTEVKALVTE FT IAKQPKLVEAQALQLTENLNQKLDRVESLIAKVERWVHS" FT CDS 660..1076 FT /codon_start=1 FT /product="unknown" FT /note="ORFII" FT /db_xref="UniProtKB/TrEMBL:B3EYP1" FT /protein_id="ACH86206.1" FT /translation="MNYQTTEKTPTYKRALEATEPINSPSLGFVNPEEYSGGITGTKAL FT IKQNNLLIQLVVELSVNVNTLSDQVAQLAKQLGKQPQQGSSTTALPDDLVDKLRNLSLG FT TEKKQEKRGTFYAYKDPYLIYKEEVEKLKKQQQS" FT misc_feature 1073..6991 FT /note="nonfunctional polyprotein due to mutation; ORFIII" FT CDS 1073..2464 FT /codon_start=1 FT /product="unknown" FT /note="ORFIIIA" FT /db_xref="UniProtKB/TrEMBL:B5TE87" FT /protein_id="ACH86210.1" FT /translation="MSTSRARTIVEQLPPATTARVEERNNTPLYDDQIRDYRQWQRRRH FT NMGRRWNQLIGRPYNQTLEQVVDPEVALQLSMQERARLVPAEVLYRSRNDDRHHQVYIH FT RSEEAILCVDGDQVDRLLIQPESAEQLNRSGMSFIHMGIVQVRIQILHRQHEGTTALVV FT FRDNRWQGDQSIFATMELDLTKGMQMVYIIPDTMMTVRDFCRNVQISILTKGYGNWQNG FT EANLLVTRGIVGRLSNTPNVAFAYQIQNVTDYLVSHGIQALPGRRYSSADVQGQQWFLR FT PSNIPAVPMAPTNVDTRNMIDGSISLRFNSYQPAPDPAPVAYNQHDEEVPLDEDEEQIR FT NHTIALWREENEVWDTLGAPSGKFDFYVRYTRPAHALQNPAHIIATGWDDLDNNPSPSS FT PSNAIRTYQTPSSTPSSDEDDDISYLQYLAQQSPVPPPTQDFTNPFSEGGGESTLPLPI FT ISTTF" FT CDS 2049..2495 FT /codon_start=1 FT /product="unknown" FT /note="ORFIV" FT /db_xref="GOA:B3EYP2" FT /db_xref="UniProtKB/TrEMBL:B3EYP2" FT /protein_id="ACH86207.1" FT /translation="MMRRYPLMRMRNRSVITPLLYGVRKTRYGIPLVHLRVNLIFMFVI FT PDLHMLYKTLLTSLPLVGMILIIILPHPVLRMLFVPTKPLPLLPLLMRMMIYLTSNILL FT SNHLSLLLHRILPILFRKVVGSLPYPYPSFQPPFDLQSDDSMEQ" FT CDS 2519..6991 FT /codon_start=1 FT /product="unknown" FT /note="ORFIIIB" FT /db_xref="GOA:B5TE89" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR001969" FT /db_xref="InterPro:IPR002156" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR036875" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:B5TE89" FT /protein_id="ACH86211.1" FT /translation="MSQSNDSPAQSPNVVFDFDRYSALTSEDDVVQSAWISENLFRENT FT GNGEVHNLVPPRPDTPRGDEVKGTQESTAHTIAVTTEGPEHEAEFDYPAFAKLQAHEES FT GQLKPKTEKVLSSAISSYNPPRDTAMTPVAYPPAQNVASPSYNPSPQMPMFEGYYPKRP FT NFKRDNHAFISLPSAQQNTGALFIMPQQIGLFHEVFTSWEAITKAYVAQQGITDPKDKA FT DFIENMLGPTEKIIWTQWRMGYADEYENLVTTADGREGTQNILSQMRRVFSLEDPATGS FT TAVQDEAYRDLERLTCDSVKHIVQYLNDFMRIAAKTGRMFIGPELSEKLWLKMPGDLGQ FT RMKKAYEEKHPGNIVGVCPRILFAYKYLEGECKDAAFRRSLKNLSFCSSIPIPGYYGGR FT SGEKRYGVRRTTTYKGKPHNTHARIEKTKHLRNKKCKCYLCGEEGHFARECPSDRRNVK FT RVAMFEGLDLPDDCEIVSIDEGEPDSDAIFSISEGEETGAIEEQCFVFQEECNGTYWLG FT KRGGYQDLVQISKEIYYCQHEWEENQPIDDPAHVRCYPCKRETTQRARLHCKLCHITSC FT LMCGPTYFNKKITVQPMPQAPFNQKGLLQQQQEYIAWCNNEIARLKEEVAFYKQLAQER FT ELQLQLEQSRKELAGTDARRRKDKGVVIDEGSCYFNPEETTRIIAHGDTQVTKTRPVKN FT MLYNMDVRMEIPGIPAFTVKAILDTGATTCCIDSRSVPKDALEENSFVVNFSGINSKQQ FT VKQKIKAGKMFINEHYFRIPYCYSFEMQIGDGIQLILGCNFIRSMYGGVRLEGNTITFY FT KQITSINTRLAAPLIQQDEEKEEELNLEEHRLIQEMVAYSTERPFVHFQQKFAGLIQEL FT KAQGYIGEEPMKYWAKNRVVCHLDIKNPDMVIEDRPLKHVTPQMEESFRRHVEALLKIG FT AIRPSKSRHRTTAIIVNSGTSIDPITGKEVKGKERMVFNYKRLNDLTNKDQYSLPGIQT FT ILQRLKGSTIFSKFDLKSGFQQVAMHPDSVEWTAFWVPSGLYEWLVMPFGLKNAPAVFQ FT RKMDHCFKGTEAFIAVYIDDILVFSKTEKEHEEHLQIMLSICQRNGLILSPTKMKIAQA FT EIEFLGAIIHNGLIKLQPHIVQKLLTFTNKQLEEVKGLRSWLGLLNYARSYIPHMGRLL FT SPLYAKVSPTGERRVNRQDWALIDKIRAQVQNLPALELPPADCFIIIETDGCMDGWGGV FT CKWKIAQYDPRSSERVCAYASGKFNPPKSTIDAEIHAVMNSLNSFKIYYLDKPSLCLRT FT DCQAIISFFNKSNVNKPSRVRWIAFTDFLTGLGIPVNIEHIDGKNNHLADALSRLVTGF FT VFAEPQCQDKFQDDLGKLEAALQEKKEAPQAMHEEYVSLLIRSADRITLSLCSMRDSSR FT NRTYSCRPGKEPTKALICEQKSCQSKGDLGSMKTMHSRSASNQQGNWWLSTSTNSLTSE FT AKRQETTHMPISYPHAIGTTSNCAKWSSY" FT CDS 3951..4238 FT /codon_start=1 FT /product="unknown" FT /note="ORFV" FT /db_xref="UniProtKB/TrEMBL:B3EYP3" FT /protein_id="ACH86208.1" FT /translation="MKASQTATPSSVFQKEKKLELLRNNVLCSRKNAMEHIGLVKEVDI FT RISCKFPKKSIIVSTNGRRINPLMIRRMFGVTPARGKPLKELAYIASYAT" FT CDS 6565..7029 FT /codon_start=1 FT /product="unknown" FT /note="ORFVI" FT /db_xref="UniProtKB/TrEMBL:B3EYP4" FT /protein_id="ACH86209.1" FT /translation="MSRQVPGRFREVGSSSSGEERGTASNARRICLPVDQISGPHYPLA FT LLYEGLVSQQNLLMQARQRTNEGLNLRTEVMPIQRRLREYEDYALQECIQSARQLVALH FT QHKLAYIRSKATRDNAYADKLPTCNRDHEQLCEVVELLEGISERISDTAV" XX SQ Sequence 7522 BP; 2321 A; 1620 C; 1671 G; 1910 T; 0 other; tggtatcagc agcttggtta tgttcttaca acgatgggag cttaaaacct tccattaggt 60 ctgaggaaag agttggttgt atggtgtgtt aagttcctat ctgtactatt attcctgtgt 120 tcttgatata gaaaacgatc atcgcgaaaa gggtgaaggc actatatctg gcagcgagag 180 aagagtaagt ccagtgaaac ccttcgcatg acgctaaagg tgatctaatc tatgtctaga 240 atttgggaag aagcaataca gagatggtat gagacatccc atacagctaa tctcgagtac 300 ttagatctag cttcaaaacc taaagtttcc aattcagaaa tctcacataa ccttgctgta 360 gtttatgacc gtttaagtct gtttagccgt gtctctatta aaaacttcaa aagtatccaa 420 gaaaccttag aaaaacaaga ccttagaatc caaaaacttg agtccagtct gaaaacctta 480 actagtgagt ttatagccca taaaccgttg tccaaaactg aggtgaaggc cttagtaaca 540 gaaattgcca aacagcctaa gcttgttgaa gcacaggccc ttcagctcac agaaaacttg 600 aaccagaagc ttgatagggt tgaatccctg atagctaagg ttgaacggtg ggttcattca 660 tgaactatca gactactgag aaaaccccaa catacaagcg agctcttgaa gcaactgagc 720 ctattaacag tccatcactt ggatttgtta acccggagga atattctggt ggtattactg 780 gtactaaagc tctcattaag caaaacaatt tgcttatcca acttgtggtg gagctttctg 840 tcaacgtcaa cactttgtct gatcaagttg ctcaactagc aaagcaactt ggaaagcaac 900 ctcagcaagg ctcatcaaca acagccttac ctgacgatct ggttgacaaa ctcagaaacc 960 tttctctagg tactgagaag aagcaggaga agcgtggtac cttctacgct tacaaagatc 1020 catacctcat ctacaaggag gaggtagaaa aactgaaaaa gcagcaacaa tcatgagtac 1080 cagccgtgcc agaaccatag tggagcaact ccctcctgct acaacagctc gagtggaaga 1140 aagaaataat actcccctct atgatgatca aatacgggat tacaggcagt ggcagcgacg 1200 gcgtcacaac atgggaagga gatggaatca actgataggt cgaccctaca atcagacctt 1260 ggaacaagtg gtagacccag aggtagcttt acagctatcg atgcaggaac gtgcaaggct 1320 agtaccagca gaggtacttt acaggtcaag aaatgatgac cggcaccacc aagtttacat 1380 tcacagatca gaggaggcaa tcctttgtgt tgatggtgat caagttgacc gattacttat 1440 acaaccggaa agtgctgaac aactgaacag gagcggtatg tcctttattc atatgggcat 1500 agttcaagtc cggattcaga tcctacacag gcaacatgag ggaacaacag cccttgtggt 1560 tttcagggac aatcggtggc aaggagacca gtcaatattc gctaccatgg agcttgattt 1620 aactaaaggt atgcagatgg tgtacataat cccggacacc atgatgaccg taagagactt 1680 ctgccgaaat gttcaaattt ccatcctcac aaaaggatat gggaattggc agaatggtga 1740 ggcgaattta cttgtcacaa ggggaatcgt tggacgacta tctaacaccc cgaatgtagc 1800 ctttgcctat cagatccaga atgttacgga ttatctagtc agtcatggaa ttcaagcatt 1860 gccaggacgg cggtattcat ctgcagatgt acagggccaa caatggtttt tacgaccatc 1920 caatattcca gctgttccaa tggccccaac taacgtggat acacgtaaca tgatagacgg 1980 atccatttct ctcagattca acagttacca accagctcca gatccggcac ctgttgctta 2040 taatcagcat gatgaggagg taccccttga tgaggatgag gaacagatcc gtaatcacac 2100 cattgcttta tggcgtgagg aaaacgaggt atgggatacc cttggtgcac cttcgggtaa 2160 atttgatttt tatgttcgtt atacccgacc tgcacatgct ctacaaaacc ctgctcacat 2220 cattgccact ggttgggatg atcttgataa taatccttcc ccatccagtc cttcgaatgc 2280 tattcgtacc taccaaaccc cttcctctac tccctcttct gatgaggatg atgatatatc 2340 ttacctccaa tatcttgctc agcaatcacc tgtccctcct cctacacagg attttaccaa 2400 tcctttttcg gaaggtggtg gggagtctac cctaccccta cccatcattt caaccacctt 2460 ttgatttaca gtctgatgac tctatggaac aatagcaaca tgggatgaat ttgatacaat 2520 gagtcaatct aacgattctc ctgcacaaag cccaaatgtt gtatttgatt ttgacaggta 2580 ttctgcctta acaagtgaag atgacgtggt tcaatcagcc tggatttctg aaaatctatt 2640 tcgtgaaaac accggaaacg gtgaagttca caatcttgtt ccgcctagac cggacacccc 2700 tcggggtgat gaggtcaaag gaactcaaga atccacggct cacactattg cagtaactac 2760 agaaggaccg gagcatgaag ccgagtttga ttatccggct tttgccaaat tacaagccca 2820 tgaagagtca gggcaactca agcccaaaac tgaaaaggtc ctgtcctcag caatttcttc 2880 atataaccca ccaagggata ctgcaatgac acctgttgca tatccaccgg ctcaaaacgt 2940 tgccagccca agttacaatc caagcccaca aatgcccatg tttgaagggt attatcccaa 3000 aaggccaaat ttcaagaggg ataatcatgc ctttatcagt cttccctcgg cccaacaaaa 3060 tactggggct ttattcatta tgcctcaaca aattggcctg tttcatgagg tttttacttc 3120 atgggaagca atcaccaaag cttatgttgc tcaacagggt atcacagacc caaaagataa 3180 ggccgatttc attgaaaata tgttgggtcc aacagagaaa ataatttgga ctcaatggcg 3240 aatgggctac gccgatgaat atgagaacct tgtcacaaca gctgacggac gtgagggtac 3300 tcagaatatc ctctctcaga tgcgaagggt cttttcctta gaagatccag caacaggttc 3360 aactgcagtc caagatgaag cctatagaga tttggagagg cttacttgtg attctgtcaa 3420 gcatatagtt caatatttaa atgactttat gcggattgca gcaaaaactg ggcgcatgtt 3480 cataggccca gagctaagtg aaaagttgtg gcttaaaatg ccaggtgact taggccaaag 3540 gatgaagaag gcctatgagg aaaaacatcc agggaatatt gttggagttt gccctcggat 3600 cctattcgct tacaagtacc ttgaaggcga gtgtaaagat gcagcgttca gacgctcctt 3660 gaagaactta tctttttgca gctcaatccc catcccaggc tattacggtg gtagaagtgg 3720 tgaaaagcgt tacggtgtaa ggcgcacaac cacttataaa gggaagcctc acaacacaca 3780 tgcaaggatt gagaaaacaa agcatttgcg caataaaaag tgcaagtgtt atctttgtgg 3840 agaggaaggt cacttcgctc gggaatgtcc aagtgaccgg cgaaatgtga aacgagttgc 3900 aatgtttgaa ggcttagacc taccagacga ttgtgaaata gtctccatag atgaaggcga 3960 gccagacagc gacgccatct tcagtatttc agaaggagaa gaaactggag ctattgagga 4020 acaatgtttt gtgttccagg aagaatgcaa tggaacatat tggcttggta aaagaggtgg 4080 atatcaggat ctcgtgcaaa tttccaaaga aatctattat tgtcagcacg aatgggagga 4140 gaatcaaccc attgatgatc cggcgcatgt tcggtgttac ccctgcaaga gggaaaccac 4200 tcaaagagct cgcttacatt gcaagctatg ccacataaca tcttgtctta tgtgtggccc 4260 cacctatttc aacaaaaaga ttactgtcca gccaatgcct caagcaccct tcaaccaaaa 4320 aggattgtta cagcaacaac aggagtacat cgcctggtgc aacaatgaaa ttgccagatt 4380 aaaggaagaa gttgctttct ataagcagct tgcccaggaa agagagttgc aattacaact 4440 cgagcagtcc agaaaggaac tcgcaggaac agacgctcgt aggcgaaaag acaaaggagt 4500 agtaattgat gagggatcat gctacttcaa cccagaagaa acaaccagaa tcattgctca 4560 tggagataca caggttacta agaccagacc tgtgaagaat atgctataca acatggatgt 4620 gcgaatggag attcccggca tcccagcttt tacagtcaag gcgattcttg acacaggagc 4680 aacaacctgc tgcattgaca gtaggagtgt gccaaaagat gccttggagg aaaattcttt 4740 tgtggtgaat ttctcaggca tcaactctaa acagcaagtc aaacagaaga tcaaggcagg 4800 aaaaatgttc attaatgagc attatttccg gattccatac tgttacagct tcgaaatgca 4860 aattggtgat ggcatccaac tcattctagg atgcaatttt atacgaagta tgtacggcgg 4920 tgttcgatta gagggtaata ctataacctt ctataagcag atcacaagca tcaacactcg 4980 acttgctgca cctcttatcc agcaggacga agaaaaggaa gaggagctta acctagaaga 5040 gcacaggtta atccaggaaa tggttgcata ctctactgag cggccatttg ttcatttcca 5100 acaaaaattt gcaggactta ttcaggagtt aaaagcccag ggatatattg gggaagagcc 5160 tatgaagtat tgggccaaaa acagagttgt ttgtcatctg gacattaaaa atccagatat 5220 ggtgattgaa gatcgcccac tgaagcatgt gacaccccaa atggaggaaa gctttcgcag 5280 acatgtggag gcactgttaa aaattggtgc gatcaggccc agtaaaagtc gacacagaac 5340 aacagccatc atagtcaact ctggaaccag tattgaccct attacaggga aggaagtcaa 5400 aggcaaggag aggatggtct ttaactataa aaggttaaat gacttaacca acaaagatca 5460 atacagcctt cctggaatcc agacaatcct gcaaagatta aaggggagca ctatattctc 5520 caaatttgac cttaaaagtg gctttcagca ggtagcaatg catccagatt cagttgaatg 5580 gacagccttt tgggtgccta gcggtctcta tgaatggcta gtcatgccat ttggattaaa 5640 gaatgctcca gcagtgtttc agagaaaaat ggatcactgt ttcaaaggaa cggaggcctt 5700 tattgctgtt tatatcgatg acatcctggt gttctcaaaa actgaaaagg agcatgagga 5760 gcacttacag attatgctct cgatctgcca aaggaatggg cttattctga gcccaacaaa 5820 gatgaaaatt gcccaagctg agattgaatt ccttggggca atcattcaca acgggcttat 5880 caagttacag ccccatattg ttcagaagtt gctaactttt accaacaagc aacttgagga 5940 ggtcaaaggg cttagatcat ggcttggtct attgaactat gcaaggagtt acattcctca 6000 tatgggccgc ctactcagcc cattgtatgc caaagtcagc ccaactggtg aacgaagagt 6060 gaacaggcaa gactgggcct taattgacaa aataagagcc caagtccaga acctgccagc 6120 cttggagcta ccacctgcag actgtttcat catcattgaa acggatggat gcatggatgg 6180 ttggggagga gtctgtaaat ggaaaatagc acagtacgac ccacgaagtt cagaaagggt 6240 ttgtgcttat gcaagtggaa agttcaaccc tccaaagtca acaatcgatg cggagataca 6300 tgcagtgatg aacagcctca acagcttcaa aatttactac ctagacaagc ctagtttatg 6360 tttaaggact gattgtcaag ctattattag cttctttaat aagtccaatg ttaacaaacc 6420 gtctagggtt aggtggattg ctttcacaga tttccttact ggtctaggaa tccctgtaaa 6480 tatagagcat atagatggaa aaaataacca tctggctgat gctctgtcca gattagtaac 6540 cggttttgtt tttgcagaac cacaatgtca agacaagttc caggacgatt tagggaagtt 6600 ggaagcagct cttcaggaga agaaagaggc accgcaagca atgcacgaag aatatgtctc 6660 cctgttgatc agatcagcgg accgcattac cctctcgctc tgctctatga gggactcgtc 6720 tcgcaacaga acctactcat gcaggccagg caaagaacca acgaaggcct taatttgcga 6780 acagaagtca tgccaatcca aaggcgactt agggagtatg aagactatgc actccaggag 6840 tgcatccaat cagcaaggca actggtggct ctccaccagc acaaactcgc ttacatcaga 6900 agcaaagcga caagagacaa cgcatatgcc gataagctac ccacatgcaa tcgggaccac 6960 gagcaactgt gcgaagtggt cgagctatta gaaggaatct cagaaagaat aagcgataca 7020 gctgtttagg acagctggct tcaatcatgg agcatggtgg acccccgcaa taatccaaaa 7080 gtttggtgtg ctttagttag tgcgtcttta tggaccacta ctttattgta ataattttcg 7140 tagtgcgctt tactttatga gtgcactctg ctttgtcttt atgcttttgt aagtgcgcta 7200 tagtacgccc gtctttatgc ttttttgtga tgcttatcct ttaagcatct tttgcttttt 7260 gcgtggcatc ctttagttca caatttaaag aatgacgatg gggcccaaaa tgtgcacccg 7320 gttctctaaa ttgctatata aggaagtgcc aaagccttgt ttttgcaagt caggaatacc 7380 tgagcataac ttggctaagc aaaagtttgt aagtgttcta agctttttct tgtaagcttt 7440 ctttctgttt caataaaatc tctcgttaat cgttgtgaac acatagttgt ttatttattt 7500 ttgtttgtgt gcgaattcga aa 7522 //